RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 DCCP43146 1447 aa13.58□□□□□ -0.24
TCOF1-203ENST00000394269 NCAPD2Q15021 1401 aa13.58□□□□□ -0.24
TCOF1-203ENST00000394269 RABEP1Q15276 862 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 LARP6Q9BRS8 491 aaKnown RBP13.57□□□□□ -0.24
TCOF1-203ENST00000394269 METTL22Q9BUU2 404 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-203ENST00000394269 IL25Q9H293 177 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 TMOD3Q9NYL9 352 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 BOLA2Q9H3K6 86 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 HDAC5Q9UQL6 1122 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 ST18O60284 1047 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 SNX21Q969T3 373 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 PALD1Q9ULE6 856 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 ASAP1Q9ULH1 1129 aa13.57□□□□□ -0.24
TCOF1-203ENST00000394269 NDUFB9Q9Y6M9 179 aa13.56□□□□□ -0.24
TCOF1-203ENST00000394269 NBPF26B4DH59 902 aa13.56□□□□□ -0.24
TCOF1-203ENST00000394269 NBPF14Q5TI25 921 aa13.56□□□□□ -0.24
TCOF1-203ENST00000394269 NBPF10Q6P3W6 841 aaKnown RBP13.56□□□□□ -0.24
TCOF1-203ENST00000394269 CNTROBQ8N137 903 aa13.56□□□□□ -0.24
TCOF1-203ENST00000394269 NBPF15Q8N660 670 aa13.56□□□□□ -0.24
TCOF1-203ENST00000394269 IL27Q8NEV9 243 aa13.56□□□□□ -0.24
TCOF1-203ENST00000394269 CARD10Q9BWT7 1032 aa13.56□□□□□ -0.24
TCOF1-203ENST00000394269 MCCP23508 829 aa13.55□□□□□ -0.24
TCOF1-203ENST00000394269 KIAA1211Q6ZU35 1233 aa13.55□□□□□ -0.24
TCOF1-203ENST00000394269 DIAPH3Q9NSV4 1193 aa13.55□□□□□ -0.24
TCOF1-203ENST00000394269 TLR7Q9NYK1 1049 aaKnown RBP13.55□□□□□ -0.24
TCOF1-203ENST00000394269 HEG1Q9ULI3 1381 aa13.55□□□□□ -0.24
TCOF1-203ENST00000394269 TRPM3Q9HCF6 1732 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-203ENST00000394269 LMTK3Q96Q04 1460 aa13.55□□□□□ -0.24
TCOF1-203ENST00000394269 DTNBO60941 627 aa13.55□□□□□ -0.24
TCOF1-203ENST00000394269 MCM4P33991 863 aa13.55□□□□□ -0.24
TCOF1-203ENST00000394269 EAF2Q96CJ1 260 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-203ENST00000394269 SALL3Q9BXA9 1300 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 PI4K2BQ8TCG2 481 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 STAP2Q9UGK3 403 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 NCOA3Q9Y6Q9 1424 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 EIF5BO60841 1220 aaKnown RBP13.54□□□□□ -0.24
TCOF1-203ENST00000394269 SASH1O94885 1247 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 FOXD4L6Q3SYB3 417 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-203ENST00000394269 TPRNQ4KMQ1 711 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 LMBR1LQ6UX01 489 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 FOXD4L3Q6VB84 417 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-203ENST00000394269 TNPO1Q92973 898 aaKnown RBP13.54□□□□□ -0.24
TCOF1-203ENST00000394269 GPATCH3Q96I76 525 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 LRRC37A3O60309 1634 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 KCNJ4P48050 445 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 NEUROD6Q96NK8 337 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 ECHDC1Q9NTX5 307 aa13.54□□□□□ -0.24
TCOF1-203ENST00000394269 CPDO75976 1380 aa13.53□□□□□ -0.24
TCOF1-203ENST00000394269 KIF1AQ12756 1690 aa13.53□□□□□ -0.24
TCOF1-203ENST00000394269 CAMTA1Q9Y6Y1 1673 aa13.53□□□□□ -0.24
TCOF1-203ENST00000394269 ZGPATQ8N5A5 531 aaKnown RBP13.53□□□□□ -0.24
TCOF1-203ENST00000394269 EDC3Q96F86 508 aaKnown RBP13.53□□□□□ -0.24
TCOF1-203ENST00000394269 GLRX3O76003 335 aaKnown RBP13.53□□□□□ -0.24
TCOF1-203ENST00000394269 SSFA2P28290 1259 aa13.53□□□□□ -0.24
TCOF1-203ENST00000394269 VIRMAQ69YN4 1812 aaKnown RBP13.53□□□□□ -0.24
TCOF1-203ENST00000394269 DNAJC10Q8IXB1 793 aa13.52□□□□□ -0.24
TCOF1-203ENST00000394269 MEX3CQ5U5Q3 659 aaKnown RBP13.52□□□□□ -0.25
TCOF1-203ENST00000394269 ERC1Q8IUD2 1116 aa13.52□□□□□ -0.25
TCOF1-203ENST00000394269 ERVV-2B6SEH9 535 aa13.52□□□□□ -0.25
TCOF1-203ENST00000394269 GPTP24298 496 aa13.52□□□□□ -0.25
TCOF1-203ENST00000394269 PIGBQ92521 554 aa13.52□□□□□ -0.25
TCOF1-203ENST00000394269 FAM177BA6PVY3 158 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 PLBD2Q8NHP8 589 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 ACSBG1Q96GR2 724 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 USP54Q70EL1 1684 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 CPA1P15085 419 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 TFCP2Q12800 502 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 PKP1Q13835 747 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 FAM182BQ5T319 152 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 ZNF594Q96JF6 807 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-203ENST00000394269 DNAJC2Q99543 621 aaKnown RBP13.51□□□□□ -0.25
TCOF1-203ENST00000394269 FAM208AQ9UK61 1670 aaKnown RBP13.51□□□□□ -0.25
TCOF1-203ENST00000394269 EXOC5O00471 708 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 FSD1Q9BTV5 496 aa13.51□□□□□ -0.25
TCOF1-203ENST00000394269 NCLP19338 710 aaKnown RBP13.5□□□□□ -0.25
TCOF1-203ENST00000394269 MTX1Q13505 466 aa13.5□□□□□ -0.25
TCOF1-203ENST00000394269 PXDNLA1KZ92 1463 aa13.5□□□□□ -0.25
TCOF1-203ENST00000394269 TRAK2O60296 914 aa13.5□□□□□ -0.25
TCOF1-203ENST00000394269 ALS2Q96Q42 1657 aa13.5□□□□□ -0.25
TCOF1-203ENST00000394269 CHAMP1Q96JM3 812 aa13.49□□□□□ -0.25
TCOF1-203ENST00000394269 LRP10Q7Z4F1 713 aa13.49□□□□□ -0.25
TCOF1-203ENST00000394269 FAM227BQ96M60 508 aa13.49□□□□□ -0.25
TCOF1-203ENST00000394269 CWC25Q9NXE8 425 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-203ENST00000394269 FAM89AQ96GI7 184 aa13.49□□□□□ -0.25
TCOF1-203ENST00000394269 OVOS2A0A0G2JMS6 1433 aa13.49□□□□□ -0.25
TCOF1-203ENST00000394269 COL5A2P05997 1499 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-203ENST00000394269 PRIM1P49642 420 aaKnown RBP13.48□□□□□ -0.25
TCOF1-203ENST00000394269 TIMM10P62072 90 aa13.48□□□□□ -0.25
TCOF1-203ENST00000394269 GBP4Q96PP9 640 aa13.48□□□□□ -0.25
TCOF1-203ENST00000394269 PRPF40BQ6NWY9 871 aaKnown RBP13.48□□□□□ -0.25
TCOF1-203ENST00000394269 SYNE4Q8N205 404 aa13.48□□□□□ -0.25
TCOF1-203ENST00000394269 LMO7Q8WWI1 1683 aa13.47□□□□□ -0.25
TCOF1-203ENST00000394269 UTRNP46939 3433 aa13.47□□□□□ -0.25
TCOF1-203ENST00000394269 SGSM2O43147 1006 aa13.47□□□□□ -0.25
TCOF1-203ENST00000394269 CHGBP05060 677 aa13.47□□□□□ -0.25
TCOF1-203ENST00000394269 PTPN12Q05209 780 aaKnown RBP13.47□□□□□ -0.25
TCOF1-203ENST00000394269 TMX3Q96JJ7 454 aa13.47□□□□□ -0.25
TCOF1-203ENST00000394269 C8orf37Q96NL8 207 aa13.47□□□□□ -0.25
TCOF1-203ENST00000394269 TBC1D2BQ9UPU7 963 aa13.47□□□□□ -0.25
TCOF1-203ENST00000394269 PTH1RQ03431 593 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms