RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PDE3AQ14432 1141 aa12.94□□□□□ -0.34
VPS53-202ENST00000389040 ALDH1L2Q3SY69 923 aa12.94□□□□□ -0.34
VPS53-202ENST00000389040 KIF6Q6ZMV9 814 aa12.94□□□□□ -0.34
VPS53-202ENST00000389040 AMIGO3Q86WK7 504 aa12.94□□□□□ -0.34
VPS53-202ENST00000389040 DZIP3Q86Y13 1208 aaKnown RBP12.94□□□□□ -0.34
VPS53-202ENST00000389040 SPON1Q9HCB6 807 aa12.94□□□□□ -0.34
VPS53-202ENST00000389040 CHPF2Q9P2E5 772 aa12.94□□□□□ -0.34
VPS53-202ENST00000389040 KDM2BQ8NHM5 1336 aa12.93□□□□□ -0.34
VPS53-202ENST00000389040 TCERG1O14776 1098 aaKnown RBP12.93□□□□□ -0.34
VPS53-202ENST00000389040 DDX58O95786 925 aaKnown RBP12.93□□□□□ -0.34
VPS53-202ENST00000389040 LAMB4A4D0S4 1761 aa12.93□□□□□ -0.34
VPS53-202ENST00000389040 GYS1P13807 737 aa12.92□□□□□ -0.34
VPS53-202ENST00000389040 MYL6BP14649 208 aa12.92□□□□□ -0.34
VPS53-202ENST00000389040 POLD1P28340 1107 aa12.92□□□□□ -0.34
VPS53-202ENST00000389040 BRPF1P55201 1214 aaPredicted RBP12.92□□□□□ -0.34
VPS53-202ENST00000389040 MAP3K15Q6ZN16 1313 aa12.92□□□□□ -0.34
VPS53-202ENST00000389040 CAMTA2O94983 1202 aa12.92□□□□□ -0.34
VPS53-202ENST00000389040 HSP90AB3PQ58FF7 597 aa12.92□□□□□ -0.34
VPS53-202ENST00000389040 CENPQQ7L2Z9 268 aaPredicted RBP12.92□□□□□ -0.34
VPS53-202ENST00000389040 COPS6Q7L5N1 327 aa12.92□□□□□ -0.34
VPS53-202ENST00000389040 UBR3Q6ZT12 1888 aa12.91□□□□□ -0.34
VPS53-202ENST00000389040 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
VPS53-202ENST00000389040 ANKRD13DQ6ZTN6 518 aa12.91□□□□□ -0.34
VPS53-202ENST00000389040 TBC1D2BQ9UPU7 963 aa12.91□□□□□ -0.34
VPS53-202ENST00000389040 ZNF330Q9Y3S2 320 aaPredicted RBP12.91□□□□□ -0.34
VPS53-202ENST00000389040 MYH14Q7Z406 1995 aaKnown RBP12.91□□□□□ -0.34
VPS53-202ENST00000389040 USPL1Q5W0Q7 1092 aa12.9□□□□□ -0.34
VPS53-202ENST00000389040 PLBD2Q8NHP8 589 aa12.9□□□□□ -0.34
VPS53-202ENST00000389040 NECTIN2Q92692 538 aa12.9□□□□□ -0.34
VPS53-202ENST00000389040 PROSER3Q2NL68 480 aa12.9□□□□□ -0.35
VPS53-202ENST00000389040 GIGYF2Q6Y7W6 1299 aaKnown RBP12.9□□□□□ -0.35
VPS53-202ENST00000389040 XAGE3Q8WTP9 111 aa12.9□□□□□ -0.35
VPS53-202ENST00000389040 ARXQ96QS3 562 aa12.9□□□□□ -0.35
VPS53-202ENST00000389040 PDGFDQ9GZP0 370 aaPredicted RBP12.9□□□□□ -0.35
VPS53-202ENST00000389040 ZBTB7AO95365 584 aa12.89□□□□□ -0.35
VPS53-202ENST00000389040 MS4A1P11836 297 aa12.89□□□□□ -0.35
VPS53-202ENST00000389040 TM4SF1P30408 202 aa12.89□□□□□ -0.35
VPS53-202ENST00000389040 FRAT1Q92837 279 aaPredicted RBP12.89□□□□□ -0.35
VPS53-202ENST00000389040 SGIP1Q9BQI5 828 aa12.89□□□□□ -0.35
VPS53-202ENST00000389040 CASZ1Q86V15 1759 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 PIP4K2AP48426 406 aaPredicted RBP12.88□□□□□ -0.35
VPS53-202ENST00000389040 PANK1Q8TE04 598 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 BCL2L12Q9HB09 334 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 PTPRCP08575 1304 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 PTGER2P43116 358 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 TRIM28Q13263 835 aaKnown RBP12.88□□□□□ -0.35
VPS53-202ENST00000389040 KSR2Q6VAB6 950 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 TTLL7Q6ZT98 887 aa12.88□□□□□ -0.35
VPS53-202ENST00000389040 SRP68Q9UHB9 627 aaKnown RBP12.88□□□□□ -0.35
VPS53-202ENST00000389040 FLIIQ13045 1269 aa12.87□□□□□ -0.35
VPS53-202ENST00000389040 TCIRG1Q13488 830 aa12.87□□□□□ -0.35
VPS53-202ENST00000389040 PARP10Q53GL7 1025 aa12.87□□□□□ -0.35
VPS53-202ENST00000389040 SMIM5Q71RC9 77 aa12.87□□□□□ -0.35
VPS53-202ENST00000389040 PARP3Q9Y6F1 533 aa12.87□□□□□ -0.35
VPS53-202ENST00000389040 ATP10DQ9P241 1426 aa12.87□□□□□ -0.35
VPS53-202ENST00000389040 ANXA1P04083 346 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 MMP10P09238 476 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 AIMP1Q12904 312 aaKnown RBP12.86□□□□□ -0.35
VPS53-202ENST00000389040 RIC3Q7Z5B4 369 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 SSH1Q8WYL5 1049 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 BCL2L13Q9BXK5 485 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
VPS53-202ENST00000389040 COG6Q9Y2V7 657 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 CARMIL3Q8ND23 1372 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 NFIXQ14938 502 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 ZNF34Q8IZ26 560 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 MRPL50Q8N5N7 158 aaKnown RBP12.86□□□□□ -0.35
VPS53-202ENST00000389040 ARHGAP45Q92619 1136 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 NYXQ9GZU5 481 aa12.86□□□□□ -0.35
VPS53-202ENST00000389040 PHAXQ9H814 394 aaKnown RBP12.86□□□□□ -0.35
VPS53-202ENST00000389040 RNF216Q9NWF9 866 aaPredicted RBP12.86□□□□□ -0.35
VPS53-202ENST00000389040 IPO8O15397 1037 aaKnown RBP12.85□□□□□ -0.35
VPS53-202ENST00000389040 AAMPQ13685 434 aa12.85□□□□□ -0.35
VPS53-202ENST00000389040 TPTE2Q6XPS3 522 aa12.85□□□□□ -0.35
VPS53-202ENST00000389040 CLUAP1Q96AJ1 413 aa12.85□□□□□ -0.35
VPS53-202ENST00000389040 ZBTB3Q9H5J0 574 aa12.85□□□□□ -0.35
VPS53-202ENST00000389040 SMC4Q9NTJ3 1288 aa12.85□□□□□ -0.35
VPS53-202ENST00000389040 PDZRN3Q9UPQ7 1066 aa12.85□□□□□ -0.35
VPS53-202ENST00000389040 KIF16BQ96L93 1317 aa12.85□□□□□ -0.35
VPS53-202ENST00000389040 IBTKQ9P2D0 1353 aaPredicted RBP12.85□□□□□ -0.35
VPS53-202ENST00000389040 POLRMTO00411 1230 aaKnown RBP12.84□□□□□ -0.35
VPS53-202ENST00000389040 NEXNQ0ZGT2 675 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 FKBP5Q13451 457 aaPredicted RBP12.84□□□□□ -0.35
VPS53-202ENST00000389040 HLFQ16534 295 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 TBC1D9BQ66K14 1250 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 PPP1R42Q7Z4L9 355 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 METTL22Q9BUU2 404 aaPredicted RBP12.84□□□□□ -0.35
VPS53-202ENST00000389040 NIP7Q9Y221 180 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS53-202ENST00000389040 CD2APQ9Y5K6 639 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 PI4KAP2A4QPH2 592 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 HSP90B1P14625 803 aaKnown RBP12.84□□□□□ -0.35
VPS53-202ENST00000389040 ZKSCAN2Q63HK3 967 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 PI4KAP1Q8N8J0 262 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 TUBGCP6Q96RT7 1819 aa12.84□□□□□ -0.35
VPS53-202ENST00000389040 SERPINB2P05120 415 aa12.83□□□□□ -0.36
VPS53-202ENST00000389040 RLBP1P12271 317 aa12.83□□□□□ -0.36
VPS53-202ENST00000389040 PDE4AP27815 886 aa12.83□□□□□ -0.36
VPS53-202ENST00000389040 MSL1Q68DK7 614 aa12.83□□□□□ -0.36
VPS53-202ENST00000389040 SKAP1Q86WV1 359 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms