RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 COL11A2P13942 1736 aaPredicted RBP21.38■■□□□ 1.01
VCX3A-201ENST00000381089 PCNTO95613 3336 aa21.37■■□□□ 1.01
VCX3A-201ENST00000381089 COL13A1Q5TAT6 717 aaPredicted RBP21.37■■□□□ 1.01
VCX3A-201ENST00000381089 PRPF40BQ6NWY9 871 aaKnown RBP21.37■■□□□ 1.01
VCX3A-201ENST00000381089 CLEC4GQ6UXB4 293 aa21.37■■□□□ 1.01
VCX3A-201ENST00000381089 NBPF5PQ86XG9 351 aaPredicted RBP21.37■■□□□ 1.01
VCX3A-201ENST00000381089 RSPH6AQ9H0K4 717 aa21.37■■□□□ 1.01
VCX3A-201ENST00000381089 BCORQ6W2J9 1755 aa21.36■■□□□ 1.01
VCX3A-201ENST00000381089 SNRPA1P09661 255 aaKnown RBP21.36■■□□□ 1.01
VCX3A-201ENST00000381089 SRGNP10124 158 aa21.36■■□□□ 1.01
VCX3A-201ENST00000381089 PHACTR3Q96KR7 559 aa21.36■■□□□ 1.01
VCX3A-201ENST00000381089 POTECB2RU33 542 aa21.35■■□□□ 1.01
VCX3A-201ENST00000381089 KCNQ3O43525 872 aa21.35■■□□□ 1.01
VCX3A-201ENST00000381089 TNS4Q8IZW8 715 aa21.35■■□□□ 1.01
VCX3A-201ENST00000381089 U2AF1L5P0DN76 240 aaPredicted RBP21.34■■□□□ 1.01
VCX3A-201ENST00000381089 U2AF1Q01081 240 aaKnown RBP eCLIP21.34■■□□□ 1.01
VCX3A-201ENST00000381089 CHADLQ6NUI6 762 aa21.34■■□□□ 1.01
VCX3A-201ENST00000381089 USP16Q9Y5T5 823 aa21.34■■□□□ 1.01
VCX3A-201ENST00000381089 IQCA1LA6NCM1 817 aa21.33■■□□□ 1.01
VCX3A-201ENST00000381089 SLX4Q8IY92 1834 aa21.33■■□□□ 1.01
VCX3A-201ENST00000381089 ARFGEF2Q9Y6D5 1785 aa21.33■■□□□ 1
VCX3A-201ENST00000381089 CACNA1SQ13698 1873 aa21.32■■□□□ 1
VCX3A-201ENST00000381089 RGL2O15211 777 aa21.32■■□□□ 1
VCX3A-201ENST00000381089 HSPA1AP0DMV8 641 aaKnown RBP21.32■■□□□ 1
VCX3A-201ENST00000381089 HSPA1BP0DMV9 641 aaKnown RBP21.32■■□□□ 1
VCX3A-201ENST00000381089 NPR1P16066 1061 aa21.32■■□□□ 1
VCX3A-201ENST00000381089 CCDC93Q567U6 631 aa21.32■■□□□ 1
VCX3A-201ENST00000381089 TPTE2Q6XPS3 522 aa21.32■■□□□ 1
VCX3A-201ENST00000381089 DDNO94850 711 aaPredicted RBP21.31■■□□□ 1
VCX3A-201ENST00000381089 PIP4K2AP48426 406 aaPredicted RBP21.31■■□□□ 1
VCX3A-201ENST00000381089 MCM10Q7L590 875 aa21.31■■□□□ 1
VCX3A-201ENST00000381089 CREBZFQ9NS37 354 aa21.31■■□□□ 1
VCX3A-201ENST00000381089 HTATSF1O43719 755 aaKnown RBP21.3■■□□□ 1
VCX3A-201ENST00000381089 NIP7Q9Y221 180 aaKnown RBP eCLIP21.29■■□□□ 1
VCX3A-201ENST00000381089 PRAMEF22A3QJZ6 481 aa21.28■■□□□ 1
VCX3A-201ENST00000381089 NEFMP07197 916 aa21.28■■□□□ 1
VCX3A-201ENST00000381089 GTF2E1P29083 439 aaPredicted RBP21.28■■□□□ 1
VCX3A-201ENST00000381089 CAPN15O75808 1086 aa21.27■■□□□ 1
VCX3A-201ENST00000381089 FKBP4Q02790 459 aaKnown RBP eCLIP21.27■■□□□ 1
VCX3A-201ENST00000381089 LDHDQ86WU2 507 aa21.27■■□□□ 1
VCX3A-201ENST00000381089 RTKN2Q8IZC4 609 aa21.27■■□□□ 1
VCX3A-201ENST00000381089 KLRG2A4D1S0 409 aaPredicted RBP21.26■□□□□ 0.99
VCX3A-201ENST00000381089 PPP2R1AP30153 589 aa21.26■□□□□ 0.99
VCX3A-201ENST00000381089 ALDH1B1P30837 517 aa21.26■□□□□ 0.99
VCX3A-201ENST00000381089 C7orf43Q8WVR3 580 aa21.26■□□□□ 0.99
VCX3A-201ENST00000381089 L3MBTL3Q96JM7 780 aaPredicted RBP21.26■□□□□ 0.99
VCX3A-201ENST00000381089 SCN4AP35499 1836 aa21.25■□□□□ 0.99
VCX3A-201ENST00000381089 TAF7Q15545 349 aaPredicted RBP21.25■□□□□ 0.99
VCX3A-201ENST00000381089 FAM177BA6PVY3 158 aa21.24■□□□□ 0.99
VCX3A-201ENST00000381089 DCTN1Q14203 1278 aa21.24■□□□□ 0.99
VCX3A-201ENST00000381089 MKRN1Q9UHC7 482 aaKnown RBP21.24■□□□□ 0.99
VCX3A-201ENST00000381089 NBPF26B4DH59 902 aa21.23■□□□□ 0.99
VCX3A-201ENST00000381089 POTEIP0CG38 1075 aa21.23■□□□□ 0.99
VCX3A-201ENST00000381089 POTEJP0CG39 1038 aa21.23■□□□□ 0.99
VCX3A-201ENST00000381089 NBPF10Q6P3W6 841 aaKnown RBP21.23■□□□□ 0.99
VCX3A-201ENST00000381089 NBPF15Q8N660 670 aa21.23■□□□□ 0.99
VCX3A-201ENST00000381089 PNISRQ8TF01 805 aaKnown RBP21.23■□□□□ 0.99
VCX3A-201ENST00000381089 NYXQ9GZU5 481 aa21.23■□□□□ 0.99
VCX3A-201ENST00000381089 TAF1DQ9H5J8 278 aaPredicted RBP21.23■□□□□ 0.99
VCX3A-201ENST00000381089 ZNF277Q9NRM2 450 aaPredicted RBP21.23■□□□□ 0.99
VCX3A-201ENST00000381089 HACL1Q9UJ83 578 aa21.22■□□□□ 0.99
VCX3A-201ENST00000381089 EAPPQ56P03 285 aaPredicted RBP21.21■□□□□ 0.99
VCX3A-201ENST00000381089 IARSP41252 1262 aaKnown RBP21.2■□□□□ 0.98
VCX3A-201ENST00000381089 KIF6Q6ZMV9 814 aa21.2■□□□□ 0.98
VCX3A-201ENST00000381089 CLEC11AQ9Y240 323 aa21.2■□□□□ 0.98
VCX3A-201ENST00000381089 LAMB4A4D0S4 1761 aa21.2■□□□□ 0.98
VCX3A-201ENST00000381089 ERVV-1B6SEH8 477 aa21.19■□□□□ 0.98
VCX3A-201ENST00000381089 HLFQ16534 295 aa21.19■□□□□ 0.98
VCX3A-201ENST00000381089 PNMA8AQ86V59 439 aaPredicted RBP21.19■□□□□ 0.98
VCX3A-201ENST00000381089 JDP2Q8WYK2 163 aa21.19■□□□□ 0.98
VCX3A-201ENST00000381089 PASKQ96RG2 1323 aa21.19■□□□□ 0.98
VCX3A-201ENST00000381089 CNTNAP1P78357 1384 aa21.19■□□□□ 0.98
VCX3A-201ENST00000381089 TMEM88BA6NKF7 163 aa21.18■□□□□ 0.98
VCX3A-201ENST00000381089 EPHX2P34913 555 aa21.18■□□□□ 0.98
VCX3A-201ENST00000381089 CC2D2BQ6DHV5 1058 aa21.18■□□□□ 0.98
VCX3A-201ENST00000381089 SYNE4Q8N205 404 aa21.18■□□□□ 0.98
VCX3A-201ENST00000381089 ZNF541Q9H0D2 1346 aa21.18■□□□□ 0.98
VCX3A-201ENST00000381089 GRIPAP1Q4V328 841 aa21.17■□□□□ 0.98
VCX3A-201ENST00000381089 NGEFQ8N5V2 710 aa21.17■□□□□ 0.98
VCX3A-201ENST00000381089 RPGRQ92834 1020 aaKnown RBP21.17■□□□□ 0.98
VCX3A-201ENST00000381089 AIDAQ96BJ3 306 aa21.17■□□□□ 0.98
VCX3A-201ENST00000381089 PSMD1Q99460 953 aa21.17■□□□□ 0.98
VCX3A-201ENST00000381089 MIS18AQ9NYP9 233 aa21.17■□□□□ 0.98
VCX3A-201ENST00000381089 FZD9O00144 591 aa21.16■□□□□ 0.98
VCX3A-201ENST00000381089 OLFM4Q6UX06 510 aa21.16■□□□□ 0.98
VCX3A-201ENST00000381089 GPC2Q8N158 579 aa21.16■□□□□ 0.98
VCX3A-201ENST00000381089 MAP3K15Q6ZN16 1313 aa21.15■□□□□ 0.98
VCX3A-201ENST00000381089 EIF6P56537 245 aaKnown RBP21.15■□□□□ 0.98
VCX3A-201ENST00000381089 CRY2Q49AN0 593 aa21.15■□□□□ 0.98
VCX3A-201ENST00000381089 PNNQ9H307 717 aaKnown RBP21.15■□□□□ 0.98
VCX3A-201ENST00000381089 RRP7AQ9Y3A4 280 aaKnown RBP21.15■□□□□ 0.98
VCX3A-201ENST00000381089 RNF123Q5XPI4 1314 aa21.14■□□□□ 0.97
VCX3A-201ENST00000381089 NUTM1Q86Y26 1132 aa21.14■□□□□ 0.97
VCX3A-201ENST00000381089 IBTKQ9P2D0 1353 aaPredicted RBP21.13■□□□□ 0.97
VCX3A-201ENST00000381089 ITGBL1O95965 494 aaPredicted RBP21.13■□□□□ 0.97
VCX3A-201ENST00000381089 LMOD1P29536 600 aaPredicted RBP21.13■□□□□ 0.97
VCX3A-201ENST00000381089 TMX4Q9H1E5 349 aaPredicted RBP21.13■□□□□ 0.97
VCX3A-201ENST00000381089 ABCC12Q96J65 1359 aa21.12■□□□□ 0.97
VCX3A-201ENST00000381089 MAPK8IP3Q9UPT6 1336 aa21.12■□□□□ 0.97
VCX3A-201ENST00000381089 EIF4A1P60842 406 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms