RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NECAB1Q8N987 351 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 SRGAP3O43295 1099 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 BCL2L12Q9HB09 334 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 ARHGEF10O15013 1369 aa22.14■■□□□ 1.14
CCDC3-201ENST00000378825 IL17REQ8NFR9 667 aa22.14■■□□□ 1.13
CCDC3-201ENST00000378825 PRIMPOLQ96LW4 560 aa22.14■■□□□ 1.13
CCDC3-201ENST00000378825 SPTLC3Q9NUV7 552 aa22.14■■□□□ 1.13
CCDC3-201ENST00000378825 VPS37CA5D8V6 355 aaPredicted RBP22.14■■□□□ 1.13
CCDC3-201ENST00000378825 ABTB2Q8N961 1025 aa22.14■■□□□ 1.13
CCDC3-201ENST00000378825 MTMR6Q9Y217 621 aa22.14■■□□□ 1.13
CCDC3-201ENST00000378825 DIP2AQ14689 1571 aa22.13■■□□□ 1.13
CCDC3-201ENST00000378825 ANXA1P04083 346 aa22.13■■□□□ 1.13
CCDC3-201ENST00000378825 FERMT3Q86UX7 667 aa22.13■■□□□ 1.13
CCDC3-201ENST00000378825 SPDYE4A6NLX3 237 aa22.13■■□□□ 1.13
CCDC3-201ENST00000378825 HMGN5P82970 282 aaKnown RBP22.13■■□□□ 1.13
CCDC3-201ENST00000378825 CAMK4Q16566 473 aa22.13■■□□□ 1.13
CCDC3-201ENST00000378825 PPP4R3BQ5MIZ7 849 aa22.13■■□□□ 1.13
CCDC3-201ENST00000378825 HYPKQ9NX55 129 aa22.13■■□□□ 1.13
CCDC3-201ENST00000378825 ZSCAN20P17040 1043 aaPredicted RBP22.12■■□□□ 1.13
CCDC3-201ENST00000378825 KIF3AQ9Y496 699 aa22.12■■□□□ 1.13
CCDC3-201ENST00000378825 NALCNQ8IZF0 1738 aa22.12■■□□□ 1.13
CCDC3-201ENST00000378825 EIF2S2P20042 333 aaKnown RBP22.12■■□□□ 1.13
CCDC3-201ENST00000378825 KIAA1524Q8TCG1 905 aa22.12■■□□□ 1.13
CCDC3-201ENST00000378825 PRPF40BQ6NWY9 871 aaKnown RBP22.11■■□□□ 1.13
CCDC3-201ENST00000378825 JAKMIP1Q96N16 626 aaKnown RBP22.11■■□□□ 1.13
CCDC3-201ENST00000378825 IGSF1Q8N6C5 1336 aa22.11■■□□□ 1.13
CCDC3-201ENST00000378825 GTF2F1P35269 517 aaKnown RBP eCLIP22.11■■□□□ 1.13
CCDC3-201ENST00000378825 RIOK3O14730 519 aaKnown RBP22.1■■□□□ 1.13
CCDC3-201ENST00000378825 HOXC9P31274 260 aa22.1■■□□□ 1.13
CCDC3-201ENST00000378825 FAM208AQ9UK61 1670 aaKnown RBP22.1■■□□□ 1.13
CCDC3-201ENST00000378825 TCEANC2Q96MN5 208 aa22.1■■□□□ 1.13
CCDC3-201ENST00000378825 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.1■■□□□ 1.13
CCDC3-201ENST00000378825 HDGFL1Q5TGJ6 251 aa22.09■■□□□ 1.13
CCDC3-201ENST00000378825 ARHGAP23Q9P227 1491 aa22.09■■□□□ 1.13
CCDC3-201ENST00000378825 BCL11BQ9C0K0 894 aaPredicted RBP22.09■■□□□ 1.13
CCDC3-201ENST00000378825 AOX1Q06278 1338 aa22.09■■□□□ 1.13
CCDC3-201ENST00000378825 SLIT1O75093 1534 aa22.09■■□□□ 1.13
CCDC3-201ENST00000378825 LIG1P18858 919 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 POLA2Q14181 598 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 ME3Q16798 604 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 GNAT3A8MTJ3 354 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 PTGS1P23219 599 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 LUZP1Q86V48 1076 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 CNTROBQ8N137 903 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 KDRP35968 1356 aa22.08■■□□□ 1.13
CCDC3-201ENST00000378825 TTC6Q86TZ1 520 aa22.08■■□□□ 1.12
CCDC3-201ENST00000378825 LRMPQ12912 555 aa22.07■■□□□ 1.12
CCDC3-201ENST00000378825 CKAP2LQ8IYA6 745 aa22.07■■□□□ 1.12
CCDC3-201ENST00000378825 PDRG1Q9NUG6 133 aa22.07■■□□□ 1.12
CCDC3-201ENST00000378825 PIK3C2AO00443 1686 aa22.07■■□□□ 1.12
CCDC3-201ENST00000378825 LETM1O95202 739 aaPredicted RBP22.07■■□□□ 1.12
CCDC3-201ENST00000378825 IGSF3O75054 1194 aa22.06■■□□□ 1.12
CCDC3-201ENST00000378825 CDC37L1Q7L3B6 337 aa22.06■■□□□ 1.12
CCDC3-201ENST00000378825 KIF1BPQ96EK5 621 aa22.06■■□□□ 1.12
CCDC3-201ENST00000378825 TAF7Q15545 349 aaPredicted RBP22.06■■□□□ 1.12
CCDC3-201ENST00000378825 NRBP1Q9UHY1 535 aa22.06■■□□□ 1.12
CCDC3-201ENST00000378825 TRHP20396 242 aaPredicted RBP22.05■■□□□ 1.12
CCDC3-201ENST00000378825 PA2G4Q9UQ80 394 aaKnown RBP22.05■■□□□ 1.12
CCDC3-201ENST00000378825 TAF6LQ9Y6J9 622 aa22.05■■□□□ 1.12
CCDC3-201ENST00000378825 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.05■■□□□ 1.12
CCDC3-201ENST00000378825 U2AF2P26368 475 aaKnown RBP eCLIP22.05■■□□□ 1.12
CCDC3-201ENST00000378825 DIAPH3Q9NSV4 1193 aa22.05■■□□□ 1.12
CCDC3-201ENST00000378825 DMTNQ08495 405 aa22.04■■□□□ 1.12
CCDC3-201ENST00000378825 TPCN1Q9ULQ1 816 aa22.04■■□□□ 1.12
CCDC3-201ENST00000378825 PI4KAP2A4QPH2 592 aa22.04■■□□□ 1.12
CCDC3-201ENST00000378825 RAB11FIP3O75154 756 aa22.04■■□□□ 1.12
CCDC3-201ENST00000378825 OS9Q13438 667 aaPredicted RBP22.04■■□□□ 1.12
CCDC3-201ENST00000378825 PI4KAP1Q8N8J0 262 aa22.04■■□□□ 1.12
CCDC3-201ENST00000378825 TFIP11Q9UBB9 837 aaKnown RBP22.04■■□□□ 1.12
CCDC3-201ENST00000378825 KCNQ3O43525 872 aa22.03■■□□□ 1.12
CCDC3-201ENST00000378825 FMN2Q9NZ56 1722 aa22.03■■□□□ 1.12
CCDC3-201ENST00000378825 CHPF2Q9P2E5 772 aa22.03■■□□□ 1.12
CCDC3-201ENST00000378825 ATP6V1DQ9Y5K8 247 aa22.03■■□□□ 1.12
CCDC3-201ENST00000378825 MRVI1Q9Y6F6 885 aa22.03■■□□□ 1.12
CCDC3-201ENST00000378825 FAM227BQ96M60 508 aa22.02■■□□□ 1.12
CCDC3-201ENST00000378825 NAA30Q147X3 362 aaPredicted RBP22.02■■□□□ 1.12
CCDC3-201ENST00000378825 CCDC192P0DO97 292 aa22.01■■□□□ 1.11
CCDC3-201ENST00000378825 PDCL2Q8N4E4 241 aa22.01■■□□□ 1.11
CCDC3-201ENST00000378825 EPB41L2O43491 1005 aaKnown RBP22■■□□□ 1.11
CCDC3-201ENST00000378825 LARP1BQ659C4 914 aaKnown RBP22■■□□□ 1.11
CCDC3-201ENST00000378825 CCDC186Q7Z3E2 898 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 ZSWIM6Q9HCJ5 1215 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 CYP46A1Q9Y6A2 500 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 FER1L4A9Z1Z3 1794 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22■■□□□ 1.11
CCDC3-201ENST00000378825 TYRO3Q06418 890 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 VPS53Q5VIR6 699 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 C16orf45Q96MC5 204 aaPredicted RBP22■■□□□ 1.11
CCDC3-201ENST00000378825 BEND3Q5T5X7 828 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 DACT1Q9NYF0 836 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 PHF8Q9UPP1 1060 aa22■■□□□ 1.11
CCDC3-201ENST00000378825 SETD1BQ9UPS6 1966 aaKnown RBP21.99■■□□□ 1.11
CCDC3-201ENST00000378825 LGR6Q9HBX8 967 aa21.99■■□□□ 1.11
CCDC3-201ENST00000378825 RBM8AQ9Y5S9 174 aaKnown RBP21.99■■□□□ 1.11
CCDC3-201ENST00000378825 STK3Q13188 491 aa21.98■■□□□ 1.11
CCDC3-201ENST00000378825 ANO6Q4KMQ2 910 aa21.98■■□□□ 1.11
CCDC3-201ENST00000378825 FAM200AQ8TCP9 573 aa21.98■■□□□ 1.11
CCDC3-201ENST00000378825 NUP62CLQ9H1M0 184 aa21.98■■□□□ 1.11
CCDC3-201ENST00000378825 MAP3K5Q99683 1374 aa21.98■■□□□ 1.11
CCDC3-201ENST00000378825 NECTIN1Q15223 517 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms