RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 MPNDQ8N594 471 aa16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 A0A0U1RQG5 324 aaPredicted RBP16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 ATP6V1AP38606 617 aa16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 SLC52A2Q9HAB3 445 aa16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 RAI14Q9P0K7 980 aa16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 ALKQ9UM73 1620 aa16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 PPRC1Q5VV67 1664 aaKnown RBP16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 FIBPO43427 364 aa16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 SAFBQ15424 915 aaKnown RBP eCLIP16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 EVI5LQ96CN4 794 aa16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 CTNNA3Q9UI47 895 aa16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 IGSF1Q8N6C5 1336 aa16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 KIDINS220Q9ULH0 1771 aa16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 KRT32Q14532 448 aa16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 BCL11BQ9C0K0 894 aaPredicted RBP16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 KDM2BQ8NHM5 1336 aa16.89■□□□□ 0.29
SHROOM1-203ENST00000378679 GOLIM4O00461 696 aa16.88■□□□□ 0.29
SHROOM1-203ENST00000378679 CIZ1Q9ULV3 898 aaPredicted RBP16.88■□□□□ 0.29
SHROOM1-203ENST00000378679 TPM4P67936 248 aa16.88■□□□□ 0.29
SHROOM1-203ENST00000378679 GLI2P10070 1586 aa16.88■□□□□ 0.29
SHROOM1-203ENST00000378679 CAVIN1Q6NZI2 390 aaKnown RBP16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 PLEKHM2Q8IWE5 1019 aa16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 KIAA0232Q92628 1395 aa16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 BECN2A8MW95 431 aa16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 SEC24BO95487 1268 aa16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 A1BGP04217 495 aa16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 MCM4P33991 863 aa16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 CHAF1AQ13111 956 aaPredicted RBP16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 AIDAQ96BJ3 306 aa16.87■□□□□ 0.29
SHROOM1-203ENST00000378679 LARP1BQ659C4 914 aaKnown RBP16.86■□□□□ 0.29
SHROOM1-203ENST00000378679 TDO2P48775 406 aa16.86■□□□□ 0.29
SHROOM1-203ENST00000378679 WDR33Q9C0J8 1336 aaKnown RBP16.86■□□□□ 0.29
SHROOM1-203ENST00000378679 ABCA6Q8N139 1617 aa16.86■□□□□ 0.29
SHROOM1-203ENST00000378679 NBPF7P0C2Y1 421 aaPredicted RBP16.86■□□□□ 0.29
SHROOM1-203ENST00000378679 SF3B2Q13435 895 aaKnown RBP16.86■□□□□ 0.29
SHROOM1-203ENST00000378679 OTUD7AQ8TE49 926 aaPredicted RBP16.86■□□□□ 0.29
SHROOM1-203ENST00000378679 VPS53Q5VIR6 699 aa16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 DDX46Q7L014 1031 aaKnown RBP16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 CREBRFQ8IUR6 639 aa16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 ATP2B1P20020 1258 aa16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 CCDC73Q6ZRK6 1079 aa16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 R3HCC1Q9Y3T6 440 aaKnown RBP16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 GOLGA6L19H0YKK7 550 aa16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 GIGYF1O75420 1035 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 ZSCAN31Q96LW9 406 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 LARP6Q9BRS8 491 aaKnown RBP16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 U3KPZ7 1027 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-203ENST00000378679 PHKG2P15735 406 aa16.84■□□□□ 0.29
SHROOM1-203ENST00000378679 SMARCC1Q92922 1105 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-203ENST00000378679 BICC1Q9H694 974 aaKnown RBP16.84■□□□□ 0.29
SHROOM1-203ENST00000378679 IMMTQ16891 758 aaKnown RBP16.84■□□□□ 0.29
SHROOM1-203ENST00000378679 DZIP3Q86Y13 1208 aaKnown RBP16.84■□□□□ 0.29
SHROOM1-203ENST00000378679 MBD3O95983 291 aa16.83■□□□□ 0.29
SHROOM1-203ENST00000378679 CEBPZQ03701 1054 aaKnown RBP16.83■□□□□ 0.29
SHROOM1-203ENST00000378679 CAVIN4Q5BKX8 364 aa16.83■□□□□ 0.29
SHROOM1-203ENST00000378679 RNF214Q8ND24 703 aa16.83■□□□□ 0.29
SHROOM1-203ENST00000378679 ZNF335Q9H4Z2 1342 aaPredicted RBP16.83■□□□□ 0.29
SHROOM1-203ENST00000378679 PNMA6EA0A0J9YXQ4 647 aa16.83■□□□□ 0.28
SHROOM1-203ENST00000378679 USP16Q9Y5T5 823 aa16.83■□□□□ 0.28
SHROOM1-203ENST00000378679 SLC5A1P13866 664 aa16.83■□□□□ 0.28
SHROOM1-203ENST00000378679 CCDC83Q8IWF9 413 aa16.83■□□□□ 0.28
SHROOM1-203ENST00000378679 SLC3A2P08195 630 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-203ENST00000378679 PRIM1P49642 420 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-203ENST00000378679 AK7Q96M32 723 aa16.82■□□□□ 0.28
SHROOM1-203ENST00000378679 PPP1R1BQ9UD71 204 aaPredicted RBP16.82■□□□□ 0.28
SHROOM1-203ENST00000378679 IL15P40933 162 aaPredicted RBP16.82■□□□□ 0.28
SHROOM1-203ENST00000378679 CDC5LQ99459 802 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-203ENST00000378679 NIP7Q9Y221 180 aaKnown RBP eCLIP16.82■□□□□ 0.28
SHROOM1-203ENST00000378679 MAP3K12Q12852 859 aa16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 DNAJC10Q8IXB1 793 aa16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 ESYT1Q9BSJ8 1104 aa16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 METTL22Q9BUU2 404 aaPredicted RBP16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 ABCC4O15439 1325 aa16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 DDX11Q96FC9 970 aa16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 ZNF853P0CG23 659 aa16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 SDF4Q9BRK5 362 aa16.81■□□□□ 0.28
SHROOM1-203ENST00000378679 KLHDC4Q8TBB5 520 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 ANKIB1Q9P2G1 1089 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 CAMSAP1Q5T5Y3 1602 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 ERBB3P21860 1342 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 RFC4P35249 363 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 FERMT3Q86UX7 667 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 PLBD2Q8NHP8 589 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 FAM89AQ96GI7 184 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 PANK2Q9BZ23 570 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 USP44Q9H0E7 712 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 PODXL2Q9NZ53 605 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 XBP1P17861 261 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 SAMD1Q6SPF0 538 aaPredicted RBP16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 ATP2B3Q16720 1220 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 NUP133Q8WUM0 1156 aa16.8■□□□□ 0.28
SHROOM1-203ENST00000378679 NBPF5PQ86XG9 351 aaPredicted RBP16.79■□□□□ 0.28
SHROOM1-203ENST00000378679 LIMCH1Q9UPQ0 1083 aa16.79■□□□□ 0.28
SHROOM1-203ENST00000378679 CDK12Q9NYV4 1490 aaPredicted RBP16.79■□□□□ 0.28
SHROOM1-203ENST00000378679 MRE11P49959 708 aa16.79■□□□□ 0.28
SHROOM1-203ENST00000378679 SASS6Q6UVJ0 657 aa16.79■□□□□ 0.28
SHROOM1-203ENST00000378679 NAPBQ9H115 298 aa16.79■□□□□ 0.28
SHROOM1-203ENST00000378679 AGLP35573 1532 aa16.79■□□□□ 0.28
SHROOM1-203ENST00000378679 SETBP1Q9Y6X0 1596 aa16.78■□□□□ 0.28
SHROOM1-203ENST00000378679 UBE2Q2Q8WVN8 375 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 181.5 ms