RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 CCDC8Q9H0W5 538 aaPredicted RBP13.3□□□□□ -0.28
VCL-202ENST00000372755 CPLX3Q8WVH0 158 aa13.3□□□□□ -0.28
VCL-202ENST00000372755 FEZ1Q99689 392 aa13.3□□□□□ -0.28
VCL-202ENST00000372755 DNA2P51530 1060 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 COMMD10Q9Y6G5 202 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 HECW1Q76N89 1606 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 PTPRCP08575 1304 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 TNNT1P13805 278 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 TMEM87AQ8NBN3 555 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 PKNOX2Q96KN3 472 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 DBF4Q9UBU7 674 aaPredicted RBP13.29□□□□□ -0.28
VCL-202ENST00000372755 TMCO5BA8MYB1 307 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 DDX12PQ92771 950 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 RARSP54136 660 aaKnown RBP13.29□□□□□ -0.28
VCL-202ENST00000372755 TTLL12Q14166 644 aaPredicted RBP13.29□□□□□ -0.28
VCL-202ENST00000372755 RNF187Q5TA31 235 aaPredicted RBP13.29□□□□□ -0.28
VCL-202ENST00000372755 CCDC82Q8N4S0 544 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 FSD2A1L4K1 749 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 IARSP41252 1262 aaKnown RBP13.29□□□□□ -0.28
VCL-202ENST00000372755 PDE4BQ07343 736 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 HLTFQ14527 1009 aaKnown RBP eCLIP13.29□□□□□ -0.28
VCL-202ENST00000372755 GRIPAP1Q4V328 841 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 WDR78Q5VTH9 848 aa13.29□□□□□ -0.28
VCL-202ENST00000372755 SSH1Q8WYL5 1049 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 IFI16Q16666 785 aaKnown RBP13.28□□□□□ -0.28
VCL-202ENST00000372755 SMARCC1Q92922 1105 aaPredicted RBP13.28□□□□□ -0.28
VCL-202ENST00000372755 TSNARE1Q96NA8 513 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 NKTRP30414 1462 aaKnown RBP13.28□□□□□ -0.28
VCL-202ENST00000372755 TCERG1LQ5VWI1 586 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 EHBP1Q8NDI1 1231 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 TEX13AQ9BXU3 409 aaPredicted RBP13.28□□□□□ -0.28
VCL-202ENST00000372755 HOMER2Q9NSB8 354 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 PABPN1LA6NDY0 278 aaKnown RBP13.28□□□□□ -0.28
VCL-202ENST00000372755 SPECC1LQ69YQ0 1117 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 KAT14Q9H8E8 782 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 BAG3O95817 575 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 CCDC172P0C7W6 258 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 LIG1P18858 919 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 SPTY2D1Q68D10 685 aaPredicted RBP13.28□□□□□ -0.28
VCL-202ENST00000372755 THUMPD2Q9BTF0 503 aaKnown RBP13.28□□□□□ -0.28
VCL-202ENST00000372755 CABP5Q9NP86 173 aa13.28□□□□□ -0.28
VCL-202ENST00000372755 CAVIN2O95810 425 aa13.27□□□□□ -0.28
VCL-202ENST00000372755 FERP16591 822 aa13.27□□□□□ -0.28
VCL-202ENST00000372755 TMC6Q7Z403 805 aa13.27□□□□□ -0.28
VCL-202ENST00000372755 CKAP2LQ8IYA6 745 aa13.27□□□□□ -0.28
VCL-202ENST00000372755 MPHOSPH6Q99547 160 aaKnown RBP13.27□□□□□ -0.28
VCL-202ENST00000372755 CCDC141Q6ZP82 1450 aa13.27□□□□□ -0.28
VCL-202ENST00000372755 PRC1O43663 620 aa13.27□□□□□ -0.29
VCL-202ENST00000372755 TMEM67Q5HYA8 995 aa13.27□□□□□ -0.29
VCL-202ENST00000372755 DRC1Q96MC2 740 aa13.27□□□□□ -0.29
VCL-202ENST00000372755 CDC5LQ99459 802 aaKnown RBP13.27□□□□□ -0.29
VCL-202ENST00000372755 BBXQ8WY36 941 aaPredicted RBP13.27□□□□□ -0.29
VCL-202ENST00000372755 ECHDC1Q9NTX5 307 aa13.27□□□□□ -0.29
VCL-202ENST00000372755 SYCP3Q8IZU3 236 aa13.27□□□□□ -0.29
VCL-202ENST00000372755 GOLIM4O00461 696 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 HLA-DOAP06340 250 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 IDEP14735 1019 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 GJB2P29033 226 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 CCT2P78371 535 aaKnown RBP13.26□□□□□ -0.29
VCL-202ENST00000372755 CTR9Q6PD62 1173 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 HMG20BQ9P0W2 317 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 USP16Q9Y5T5 823 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 RMND1Q9NWS8 449 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 CALCOCO1Q9P1Z2 691 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 ACTN2P35609 894 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 UBA7P41226 1012 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 C6orf163Q5TEZ5 329 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 SPDYE4A6NLX3 237 aa13.26□□□□□ -0.29
VCL-202ENST00000372755 NOP2P46087 812 aaKnown RBP13.25□□□□□ -0.29
VCL-202ENST00000372755 DHX29Q7Z478 1369 aaKnown RBP13.25□□□□□ -0.29
VCL-202ENST00000372755 SSFA2P28290 1259 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 PRPF4BQ13523 1007 aaKnown RBP13.25□□□□□ -0.29
VCL-202ENST00000372755 MPRIPQ6WCQ1 1025 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 MFSD6Q6ZSS7 791 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 USP25Q9UHP3 1055 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 MCM5P33992 734 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 NCOA7Q8NI08 942 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 TRMT1Q9NXH9 659 aaKnown RBP13.25□□□□□ -0.29
VCL-202ENST00000372755 STX6O43752 255 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 METAP2P50579 478 aaKnown RBP eCLIP13.25□□□□□ -0.293e-6■■□□□ 14.5
VCL-202ENST00000372755 CCDC102BQ68D86 513 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 TSPY2A6NKD2 308 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 TBCAO75347 108 aaKnown RBP13.25□□□□□ -0.29
VCL-202ENST00000372755 GSTO1P78417 241 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 UVSSAQ2YD98 709 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 CCDC174Q6PII3 467 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 MAATS1Q7Z4T9 603 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 CEP112Q8N8E3 955 aa13.25□□□□□ -0.29
VCL-202ENST00000372755 SNW1Q13573 536 aaKnown RBP13.24□□□□□ -0.29
VCL-202ENST00000372755 ERMNQ8TAM6 284 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 PLVAPQ9BX97 442 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 IKBKGQ9Y6K9 419 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 C6orf229H3BNL8 230 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 LRRC45Q96CN5 670 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 ARAP1Q96P48 1450 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 F6X3S4 739 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 RAPGEF3O95398 923 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 CBX1P83916 185 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 TNPO1Q92973 898 aaKnown RBP13.24□□□□□ -0.29
VCL-202ENST00000372755 USP37Q86T82 979 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms