RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 COMMD10Q9Y6G5 202 aa17.52■□□□□ 0.4
COL5A1-201ENST00000371817 CASQ2O14958 399 aaPredicted RBP17.52■□□□□ 0.39
COL5A1-201ENST00000371817 EVA1CP58658 441 aa17.52■□□□□ 0.39
COL5A1-201ENST00000371817 TRIM7Q9C029 511 aa17.52■□□□□ 0.39
COL5A1-201ENST00000371817 ATF7IPQ6VMQ6 1270 aa17.52■□□□□ 0.39
COL5A1-201ENST00000371817 TBC1D2Q9BYX2 928 aa17.51■□□□□ 0.39
COL5A1-201ENST00000371817 GABPB1Q06547 395 aaPredicted RBP17.51■□□□□ 0.39
COL5A1-201ENST00000371817 ZNF365Q70YC5 407 aa17.51■□□□□ 0.39
COL5A1-201ENST00000371817 RNF216Q9NWF9 866 aaPredicted RBP17.51■□□□□ 0.39
COL5A1-201ENST00000371817 NUTM2DQ5VT03 806 aaPredicted RBP17.51■□□□□ 0.39
COL5A1-201ENST00000371817 PRDM2Q13029 1718 aa17.51■□□□□ 0.39
COL5A1-201ENST00000371817 GTF3C6Q969F1 213 aa17.51■□□□□ 0.39
COL5A1-201ENST00000371817 BCAR3O75815 825 aa17.5■□□□□ 0.39
COL5A1-201ENST00000371817 GCKP35557 465 aa17.5■□□□□ 0.39
COL5A1-201ENST00000371817 FERMT1Q9BQL6 677 aa17.5■□□□□ 0.39
COL5A1-201ENST00000371817 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.5■□□□□ 0.39
COL5A1-201ENST00000371817 ZNF830Q96NB3 372 aaPredicted RBP17.5■□□□□ 0.39
COL5A1-201ENST00000371817 GNL3LQ9NVN8 582 aaKnown RBP17.5■□□□□ 0.39
COL5A1-201ENST00000371817 XRCC6P12956 609 aaKnown RBP eCLIP17.5■□□□□ 0.39
COL5A1-201ENST00000371817 CCDC77Q9BR77 488 aa17.5■□□□□ 0.39
COL5A1-201ENST00000371817 BAG4O95429 457 aaKnown RBP17.5■□□□□ 0.39
COL5A1-201ENST00000371817 HCLS1P14317 486 aaPredicted RBP17.5■□□□□ 0.39
COL5A1-201ENST00000371817 ATP2B2Q01814 1243 aa17.5■□□□□ 0.39
COL5A1-201ENST00000371817 UBASH3AP57075 661 aa17.5■□□□□ 0.39
COL5A1-201ENST00000371817 CIB2O75838 187 aa17.49■□□□□ 0.39
COL5A1-201ENST00000371817 RBBP5Q15291 538 aaKnown RBP17.49■□□□□ 0.39
COL5A1-201ENST00000371817 C8orf76Q96K31 380 aa17.49■□□□□ 0.39
COL5A1-201ENST00000371817 ARHGAP25P42331 645 aa17.49■□□□□ 0.39
COL5A1-201ENST00000371817 SELENOSQ9BQE4 189 aa17.49■□□□□ 0.39
COL5A1-201ENST00000371817 U3KPZ7 1027 aaPredicted RBP17.49■□□□□ 0.39
COL5A1-201ENST00000371817 FSIP1Q8NA03 581 aa17.49■□□□□ 0.39
COL5A1-201ENST00000371817 USH1CQ9Y6N9 552 aa17.49■□□□□ 0.39
COL5A1-201ENST00000371817 MTIF2P46199 727 aaKnown RBP17.49■□□□□ 0.39
COL5A1-201ENST00000371817 CETN1Q12798 172 aa17.49■□□□□ 0.39
COL5A1-201ENST00000371817 ACTN2P35609 894 aa17.48■□□□□ 0.39
COL5A1-201ENST00000371817 AFAP1L1Q8TED9 768 aa17.48■□□□□ 0.39
COL5A1-201ENST00000371817 TTC36A6NLP5 189 aa17.48■□□□□ 0.39
COL5A1-201ENST00000371817 ZMAT2Q96NC0 199 aaKnown RBP17.48■□□□□ 0.39
COL5A1-201ENST00000371817 PHACTR2O75167 634 aa17.48■□□□□ 0.39
COL5A1-201ENST00000371817 RPAINQ86UA6 219 aa17.48■□□□□ 0.39
COL5A1-201ENST00000371817 TCP11L2Q8N4U5 519 aa17.48■□□□□ 0.39
COL5A1-201ENST00000371817 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.48■□□□□ 0.39
COL5A1-201ENST00000371817 ATP6V1AP38606 617 aa17.47■□□□□ 0.39
COL5A1-201ENST00000371817 TWISTNBQ3B726 338 aaPredicted RBP17.47■□□□□ 0.39
COL5A1-201ENST00000371817 CTAGE1Q96RT6 745 aa17.47■□□□□ 0.39
COL5A1-201ENST00000371817 SIL1Q9H173 461 aa17.47■□□□□ 0.39
COL5A1-201ENST00000371817 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.47■□□□□ 0.39
COL5A1-201ENST00000371817 KANK3Q6NY19 840 aa17.47■□□□□ 0.39
COL5A1-201ENST00000371817 INTS8Q75QN2 995 aaKnown RBP17.47■□□□□ 0.39
COL5A1-201ENST00000371817 RAB34Q9BZG1 259 aa17.47■□□□□ 0.39
COL5A1-201ENST00000371817 CCDC38Q502W7 563 aa17.47■□□□□ 0.39
COL5A1-201ENST00000371817 RBM27Q9P2N5 1060 aaKnown RBP17.47■□□□□ 0.39
COL5A1-201ENST00000371817 PRC1O43663 620 aa17.47■□□□□ 0.39
COL5A1-201ENST00000371817 CYLC1P35663 651 aaPredicted RBP17.46■□□□□ 0.39
COL5A1-201ENST00000371817 TSPYL2Q9H2G4 693 aaPredicted RBP17.46■□□□□ 0.39
COL5A1-201ENST00000371817 VAV2P52735 878 aa17.46■□□□□ 0.39
COL5A1-201ENST00000371817 WASHC2CQ9Y4E1 1318 aa17.46■□□□□ 0.39
COL5A1-201ENST00000371817 STMN1P16949 149 aa17.46■□□□□ 0.39
COL5A1-201ENST00000371817 ALDH3A1P30838 453 aa17.46■□□□□ 0.39
COL5A1-201ENST00000371817 CARMIL2Q6F5E8 1435 aa17.46■□□□□ 0.39
COL5A1-201ENST00000371817 CEP85LQ5SZL2 805 aa17.46■□□□□ 0.39
COL5A1-201ENST00000371817 PHLDB2Q86SQ0 1253 aa17.46■□□□□ 0.39
COL5A1-201ENST00000371817 MAP7Q14244 749 aa17.46■□□□□ 0.38
COL5A1-201ENST00000371817 WASHC2AQ641Q2 1341 aa17.46■□□□□ 0.38
COL5A1-201ENST00000371817 ZNF76P36508 570 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 NEDD9Q14511 834 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 WHAMMQ8TF30 809 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 CCDC196A0A1B0GTZ2 297 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 MYO1BO43795 1136 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 SEC62Q99442 399 aaKnown RBP17.45■□□□□ 0.38
COL5A1-201ENST00000371817 BIN1O00499 593 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 CCDC170Q8IYT3 715 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 NDUFAB1O14561 156 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 AACSQ86V21 672 aa17.45■□□□□ 0.38
COL5A1-201ENST00000371817 EXOSC9Q06265 439 aaKnown RBP17.44■□□□□ 0.38
COL5A1-201ENST00000371817 STX6O43752 255 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 SYTL4Q96C24 671 aaPredicted RBP17.44■□□□□ 0.38
COL5A1-201ENST00000371817 PYM1Q9BRP8 204 aaKnown RBP17.44■□□□□ 0.38
COL5A1-201ENST00000371817 ATP2A1O14983 1001 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 CNNM1Q9NRU3 951 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 LIMCH1Q9UPQ0 1083 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 ERCC3P19447 782 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 PANK2Q9BZ23 570 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 PPFIA2O75334 1257 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 PRPHP41219 470 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
COL5A1-201ENST00000371817 CCDC172P0C7W6 258 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 FKBP4Q02790 459 aaKnown RBP eCLIP17.44■□□□□ 0.38
COL5A1-201ENST00000371817 FAM160A1Q05DH4 1040 aa17.44■□□□□ 0.38
COL5A1-201ENST00000371817 SMC1BQ8NDV3 1235 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 NUF2Q9BZD4 464 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 PLEKHH2Q8IVE3 1493 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 ANO6Q4KMQ2 910 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 EPSTI1Q96J88 318 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 RAB11FIP3O75154 756 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 EFCAB2Q5VUJ9 269 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 SEC63Q9UGP8 760 aaKnown RBP17.43■□□□□ 0.38
COL5A1-201ENST00000371817 PRR16Q569H4 304 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 MICAL1Q8TDZ2 1067 aa17.43■□□□□ 0.38
COL5A1-201ENST00000371817 MINK1Q8N4C8 1332 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms