RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 CNTNAP4Q9C0A0 1308 aa25.1■■□□□ 1.61
CLN3-205ENST00000359984 LRRC4BQ9NT99 713 aa25.1■■□□□ 1.61
CLN3-205ENST00000359984 MYH14Q7Z406 1995 aaKnown RBP25.1■■□□□ 1.61
CLN3-205ENST00000359984 MEIS3Q99687 375 aa25.09■■□□□ 1.61
CLN3-205ENST00000359984 N4BP2Q86UW6 1770 aaPredicted RBP25.09■■□□□ 1.61
CLN3-205ENST00000359984 RC3H1Q5TC82 1133 aaKnown RBP25.09■■□□□ 1.61
CLN3-205ENST00000359984 ZBTB3Q9H5J0 574 aa25.09■■□□□ 1.61
CLN3-205ENST00000359984 PCDHB15Q9Y5E8 787 aa25.09■■□□□ 1.61
CLN3-205ENST00000359984 APBA3O96018 575 aa25.08■■□□□ 1.61
CLN3-205ENST00000359984 LINS1Q8NG48 757 aa25.08■■□□□ 1.61
CLN3-205ENST00000359984 PLSCR1O15162 318 aa25.07■■□□□ 1.6
CLN3-205ENST00000359984 KIF6Q6ZMV9 814 aa25.07■■□□□ 1.6
CLN3-205ENST00000359984 MYD88Q99836 296 aa25.07■■□□□ 1.6
CLN3-205ENST00000359984 ALDH1L1O75891 902 aa25.06■■□□□ 1.6
CLN3-205ENST00000359984 IGKV5-2P06315 115 aa25.06■■□□□ 1.6
CLN3-205ENST00000359984 NEXNQ0ZGT2 675 aa25.06■■□□□ 1.6
CLN3-205ENST00000359984 CWF19L2Q2TBE0 894 aaKnown RBP25.06■■□□□ 1.6
CLN3-205ENST00000359984 SLC27A3Q5K4L6 730 aa25.06■■□□□ 1.6
CLN3-205ENST00000359984 ARXQ96QS3 562 aa25.06■■□□□ 1.6
CLN3-205ENST00000359984 NPM2Q86SE8 214 aaKnown RBP25.06■■□□□ 1.6
CLN3-205ENST00000359984 USP44Q9H0E7 712 aa25.06■■□□□ 1.6
CLN3-205ENST00000359984 MAP3K15Q6ZN16 1313 aa25.05■■□□□ 1.6
CLN3-205ENST00000359984 ARFGEF2Q9Y6D5 1785 aa25.05■■□□□ 1.6
CLN3-205ENST00000359984 PROM2Q8N271 834 aa25.05■■□□□ 1.6
CLN3-205ENST00000359984 C1orf115Q9H7X2 142 aa25.05■■□□□ 1.6
CLN3-205ENST00000359984 TXNRD1Q16881 649 aa25.04■■□□□ 1.6
CLN3-205ENST00000359984 DZIP3Q86Y13 1208 aaKnown RBP25.04■■□□□ 1.6
CLN3-205ENST00000359984 NUP188Q5SRE5 1749 aa25.04■■□□□ 1.6
CLN3-205ENST00000359984 TBC1D2BQ9UPU7 963 aa25.04■■□□□ 1.6
CLN3-205ENST00000359984 TAF1LQ8IZX4 1826 aa25.04■■□□□ 1.6
CLN3-205ENST00000359984 NEURL1BA8MQ27 555 aa25.03■■□□□ 1.6
CLN3-205ENST00000359984 RPS6KA4O75676 772 aa25.02■■□□□ 1.6
CLN3-205ENST00000359984 GNAI3P08754 354 aa25.02■■□□□ 1.6
CLN3-205ENST00000359984 TNS1Q9HBL0 1735 aaKnown RBP25.02■■□□□ 1.6
CLN3-205ENST00000359984 ATP5J2-PTCD1G3V325 749 aa25.02■■□□□ 1.6
CLN3-205ENST00000359984 COL15A1P39059 1388 aa25.01■■□□□ 1.59
CLN3-205ENST00000359984 ERVV-1B6SEH8 477 aa25.01■■□□□ 1.59
CLN3-205ENST00000359984 GNPATO15228 680 aa25.01■■□□□ 1.59
CLN3-205ENST00000359984 HLFQ16534 295 aa25.01■■□□□ 1.59
CLN3-205ENST00000359984 C4BP0C0L5 1744 aa25■■□□□ 1.59
CLN3-205ENST00000359984 GIGYF2Q6Y7W6 1299 aaKnown RBP25■■□□□ 1.59
CLN3-205ENST00000359984 IGHDP01880 384 aa25■■□□□ 1.59
CLN3-205ENST00000359984 TCIRG1Q13488 830 aa25■■□□□ 1.59
CLN3-205ENST00000359984 GCKRQ14397 625 aa25■■□□□ 1.59
CLN3-205ENST00000359984 SMIM5Q71RC9 77 aa25■■□□□ 1.59
CLN3-205ENST00000359984 IBTKQ9P2D0 1353 aaPredicted RBP24.99■■□□□ 1.59
CLN3-205ENST00000359984 NBPF7P0C2Y1 421 aaPredicted RBP24.99■■□□□ 1.59
CLN3-205ENST00000359984 A0A087WZG4 1122 aa24.98■■□□□ 1.59
CLN3-205ENST00000359984 GNAI2P04899 355 aa24.98■■□□□ 1.59
CLN3-205ENST00000359984 UBTFL1P0CB47 393 aaPredicted RBP24.98■■□□□ 1.59
CLN3-205ENST00000359984 ISCA1Q9BUE6 129 aa24.98■■□□□ 1.59
CLN3-205ENST00000359984 C9orf78Q9NZ63 289 aaPredicted RBP24.98■■□□□ 1.59
CLN3-205ENST00000359984 RTCBQ9Y3I0 505 aaKnown RBP24.98■■□□□ 1.59
CLN3-205ENST00000359984 CAMTA2O94983 1202 aa24.98■■□□□ 1.59
CLN3-205ENST00000359984 AMIGO3Q86WK7 504 aa24.98■■□□□ 1.59
CLN3-205ENST00000359984 AK7Q96M32 723 aa24.98■■□□□ 1.59
CLN3-205ENST00000359984 GRM8O00222 908 aa24.97■■□□□ 1.59
CLN3-205ENST00000359984 KDM2BQ8NHM5 1336 aa24.97■■□□□ 1.59
CLN3-205ENST00000359984 UTYO14607 1347 aa24.96■■□□□ 1.59
CLN3-205ENST00000359984 TRIM28Q13263 835 aaKnown RBP24.96■■□□□ 1.59
CLN3-205ENST00000359984 SIRT2Q8IXJ6 389 aa24.96■■□□□ 1.59
CLN3-205ENST00000359984 RWDD1Q9H446 243 aaPredicted RBP24.96■■□□□ 1.59
CLN3-205ENST00000359984 HMGB2P26583 209 aaKnown RBP24.95■■□□□ 1.58
CLN3-205ENST00000359984 HDAC1Q13547 482 aaPredicted RBP24.95■■□□□ 1.58
CLN3-205ENST00000359984 HSP90AB3PQ58FF7 597 aa24.95■■□□□ 1.58
CLN3-205ENST00000359984 CCDC191Q8NCU4 936 aa24.95■■□□□ 1.58
CLN3-205ENST00000359984 CWC25Q9NXE8 425 aaPredicted RBP24.95■■□□□ 1.58
CLN3-205ENST00000359984 LRRFIP2Q9Y608 721 aaKnown RBP24.95■■□□□ 1.58
CLN3-205ENST00000359984 CEP85Q6P2H3 762 aa24.94■■□□□ 1.58
CLN3-205ENST00000359984 CENPQQ7L2Z9 268 aaPredicted RBP24.94■■□□□ 1.58
CLN3-205ENST00000359984 RPAP2Q8IXW5 612 aaPredicted RBP24.93■■□□□ 1.58
CLN3-205ENST00000359984 ANKRD44Q8N8A2 993 aa24.93■■□□□ 1.58
CLN3-205ENST00000359984 AFDNP55196 1824 aaKnown RBP24.93■■□□□ 1.58
CLN3-205ENST00000359984 GPTP24298 496 aa24.92■■□□□ 1.58
CLN3-205ENST00000359984 ARHGEF1Q92888 912 aaKnown RBP24.92■■□□□ 1.58
CLN3-205ENST00000359984 EN1Q05925 392 aaPredicted RBP24.92■■□□□ 1.58
CLN3-205ENST00000359984 JARID2Q92833 1246 aaPredicted RBP24.92■■□□□ 1.58
CLN3-205ENST00000359984 CAMKK2Q96RR4 588 aa24.92■■□□□ 1.58
CLN3-205ENST00000359984 RGPD3A6NKT7 1758 aaPredicted RBP24.91■■□□□ 1.58
CLN3-205ENST00000359984 RGPD4Q7Z3J3 1758 aa24.91■■□□□ 1.58
CLN3-205ENST00000359984 PHF14O94880 888 aa24.91■■□□□ 1.58
CLN3-205ENST00000359984 TRAPPC3LQ5T215 181 aa24.91■■□□□ 1.58
CLN3-205ENST00000359984 ZNF34Q8IZ26 560 aa24.91■■□□□ 1.58
CLN3-205ENST00000359984 NARFQ9UHQ1 456 aa24.91■■□□□ 1.58
CLN3-205ENST00000359984 NUP98P52948 1817 aa24.91■■□□□ 1.58
CLN3-205ENST00000359984 H7C1W4 665 aa24.9■■□□□ 1.58
CLN3-205ENST00000359984 CASP7P55210 303 aa24.89■■□□□ 1.58
CLN3-205ENST00000359984 SF3B2Q13435 895 aaKnown RBP24.89■■□□□ 1.58
CLN3-205ENST00000359984 EZH2Q15910 746 aaKnown RBP24.89■■□□□ 1.58
CLN3-205ENST00000359984 UBE3BQ7Z3V4 1068 aa24.89■■□□□ 1.58
CLN3-205ENST00000359984 NLRP10Q86W26 655 aa24.89■■□□□ 1.58
CLN3-205ENST00000359984 SUCLG2Q96I99 432 aa24.89■■□□□ 1.58
CLN3-205ENST00000359984 SRP68Q9UHB9 627 aaKnown RBP24.89■■□□□ 1.58
CLN3-205ENST00000359984 HDAC5Q9UQL6 1122 aa24.89■■□□□ 1.58
CLN3-205ENST00000359984 ADRA2BP18089 450 aa24.89■■□□□ 1.57
CLN3-205ENST00000359984 CLEC4GQ6UXB4 293 aa24.89■■□□□ 1.57
CLN3-205ENST00000359984 KAZALD1Q96I82 304 aa24.89■■□□□ 1.57
CLN3-205ENST00000359984 ZNF652Q9Y2D9 606 aa24.89■■□□□ 1.57
CLN3-205ENST00000359984 BCORQ6W2J9 1755 aa24.88■■□□□ 1.57
CLN3-205ENST00000359984 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms