RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FAM135BQ49AJ0 1406 aa14.21□□□□□ -0.13
USP1-201ENST00000339950 GOLIM4O00461 696 aa14.21□□□□□ -0.13
USP1-201ENST00000339950 TNMDQ9H2S6 317 aa14.21□□□□□ -0.13
USP1-201ENST00000339950 SASS6Q6UVJ0 657 aa14.21□□□□□ -0.14
USP1-201ENST00000339950 ZFYVE9O95405 1425 aa14.21□□□□□ -0.14
USP1-201ENST00000339950 GLI2P10070 1586 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 HSP90AA4PQ58FG1 418 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 SDF4Q9BRK5 362 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 LRRC7Q96NW7 1537 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 BIN1O00499 593 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 CCDC144CPQ8IYA2 1237 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 FLT4P35916 1363 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 GPTP24298 496 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 EVA1CP58658 441 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 TIMM10P62072 90 aa14.2□□□□□ -0.14
USP1-201ENST00000339950 CABP4P57796 275 aa14.19□□□□□ -0.14
USP1-201ENST00000339950 BRF1Q92994 677 aa14.19□□□□□ -0.14
USP1-201ENST00000339950 PIK3R4Q99570 1358 aa14.19□□□□□ -0.14
USP1-201ENST00000339950 SPDYE4A6NLX3 237 aa14.19□□□□□ -0.14
USP1-201ENST00000339950 ZSCAN22P10073 491 aaPredicted RBP14.19□□□□□ -0.14
USP1-201ENST00000339950 ME1P48163 572 aa14.19□□□□□ -0.14
USP1-201ENST00000339950 KRT85P78386 507 aa14.19□□□□□ -0.14
USP1-201ENST00000339950 RRP12Q5JTH9 1297 aaKnown RBP14.19□□□□□ -0.14
USP1-201ENST00000339950 QRICH2Q9H0J4 1663 aa14.19□□□□□ -0.14
USP1-201ENST00000339950 CPLX1O14810 134 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 SUCLG2Q96I99 432 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 C16orf45Q96MC5 204 aaPredicted RBP14.18□□□□□ -0.14
USP1-201ENST00000339950 TRMT1Q9NXH9 659 aaKnown RBP14.18□□□□□ -0.14
USP1-201ENST00000339950 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.18□□□□□ -0.14
USP1-201ENST00000339950 TSPOAP1O95153 1857 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 TPM2P07951 284 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 CBX1P83916 185 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 OTUD7BQ6GQQ9 843 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 LUZP1Q86V48 1076 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 FAM177A1Q8N128 213 aaPredicted RBP14.18□□□□□ -0.14
USP1-201ENST00000339950 ZNF594Q96JF6 807 aaPredicted RBP14.18□□□□□ -0.14
USP1-201ENST00000339950 JAK2O60674 1132 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 GCP02774 474 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 TOM1L2Q6ZVM7 507 aa14.18□□□□□ -0.14
USP1-201ENST00000339950 POLR3DP05423 398 aaPredicted RBP14.17□□□□□ -0.14
USP1-201ENST00000339950 DACT1Q9NYF0 836 aa14.17□□□□□ -0.14
USP1-201ENST00000339950 ANKLE2Q86XL3 938 aa14.17□□□□□ -0.14
USP1-201ENST00000339950 NUP62CLQ9H1M0 184 aa14.17□□□□□ -0.14
USP1-201ENST00000339950 NCOA5Q9HCD5 579 aaKnown RBP14.17□□□□□ -0.14
USP1-201ENST00000339950 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.17□□□□□ -0.14
USP1-201ENST00000339950 V9GYY5 206 aaPredicted RBP14.17□□□□□ -0.14
USP1-201ENST00000339950 MYOM1P52179 1685 aa14.17□□□□□ -0.14
USP1-201ENST00000339950 TATP17735 454 aaPredicted RBP14.17□□□□□ -0.14
USP1-201ENST00000339950 PIBF1Q8WXW3 757 aa14.17□□□□□ -0.14
USP1-201ENST00000339950 EAF2Q96CJ1 260 aaPredicted RBP14.17□□□□□ -0.14
USP1-201ENST00000339950 ATF3P18847 181 aa14.16□□□□□ -0.14
USP1-201ENST00000339950 RUFY3Q7L099 469 aa14.16□□□□□ -0.14
USP1-201ENST00000339950 GRM8O00222 908 aa14.16□□□□□ -0.14
USP1-201ENST00000339950 SGSM2O43147 1006 aa14.16□□□□□ -0.14
USP1-201ENST00000339950 RXRAP19793 462 aa14.16□□□□□ -0.14
USP1-201ENST00000339950 LMBR1LQ6UX01 489 aa14.16□□□□□ -0.14
USP1-201ENST00000339950 SHROOM2Q13796 1616 aa14.16□□□□□ -0.14
USP1-201ENST00000339950 NCBP3Q53F19 620 aaKnown RBP14.16□□□□□ -0.14
USP1-201ENST00000339950 F13A1P00488 732 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 EIF4A1P60842 406 aaKnown RBP14.15□□□□□ -0.14
USP1-201ENST00000339950 CSPP1Q1MSJ5 1256 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 CCDC183Q5T5S1 534 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 KRT28Q7Z3Y7 464 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 CCAR2Q8N163 923 aaKnown RBP14.15□□□□□ -0.14
USP1-201ENST00000339950 TMX1Q9H3N1 280 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 USP16Q9Y5T5 823 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 TFCP2Q12800 502 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 CDC37L1Q7L3B6 337 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 A0A0D9SFI3 127 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 BRD1O95696 1058 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 CCDC192P0DO97 292 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 PSMA5P28066 241 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 CREB3L3Q68CJ9 461 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 LARP1Q6PKG0 1096 aaKnown RBP14.15□□□□□ -0.14
USP1-201ENST00000339950 MROH2AA6NES4 1674 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 MAP3K5Q99683 1374 aa14.15□□□□□ -0.14
USP1-201ENST00000339950 ME3Q16798 604 aa14.15□□□□□ -0.15
USP1-201ENST00000339950 DBNDD2Q9BQY9 259 aa14.15□□□□□ -0.15
USP1-201ENST00000339950 ZKSCAN5Q9Y2L8 839 aa14.14□□□□□ -0.15
USP1-201ENST00000339950 DNAJC25Q9H1X3 360 aa14.14□□□□□ -0.15
USP1-201ENST00000339950 PNPLA6Q8IY17 1366 aa14.14□□□□□ -0.15
USP1-201ENST00000339950 GOLGA6L6A8MZA4 724 aa14.14□□□□□ -0.15
USP1-201ENST00000339950 TPD52L1Q16890 204 aaPredicted RBP14.14□□□□□ -0.15
USP1-201ENST00000339950 NFXL1Q6ZNB6 911 aa14.14□□□□□ -0.15
USP1-201ENST00000339950 FTOQ9C0B1 505 aaKnown RBP eCLIP14.14□□□□□ -0.151e-8■□□□□ 10.2
USP1-201ENST00000339950 TAF6LQ9Y6J9 622 aa14.14□□□□□ -0.15
USP1-201ENST00000339950 ADGRB3O60242 1522 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 CPS1P31327 1500 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 SLC4A8Q2Y0W8 1093 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 CCDC73Q6ZRK6 1079 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 ANKRD13DQ6ZTN6 518 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 PRDM11Q9NQV5 511 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 MLH3Q9UHC1 1453 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 DDIT3P35638 169 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 KSR2Q6VAB6 950 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 IQSEC3Q9UPP2 1182 aaPredicted RBP14.13□□□□□ -0.15
USP1-201ENST00000339950 ADGRB1O14514 1584 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 PLEKHG3A1L390 1219 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 IDH1O75874 414 aaKnown RBP14.13□□□□□ -0.15
USP1-201ENST00000339950 TNNT3P45378 269 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms