RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 BRPF3Q9ULD4 1205 aa14.24□□□□□ -0.13
SYNGAP1-201ENST00000293748 NRAPQ86VF7 1730 aa14.24□□□□□ -0.13
SYNGAP1-201ENST00000293748 PES1O00541 588 aaKnown RBP14.24□□□□□ -0.13
SYNGAP1-201ENST00000293748 POLD1P28340 1107 aa14.24□□□□□ -0.13
SYNGAP1-201ENST00000293748 LRRFIP1Q32MZ4 808 aaKnown RBP14.24□□□□□ -0.13
SYNGAP1-201ENST00000293748 KCNQ2O43526 872 aa14.23□□□□□ -0.13
SYNGAP1-201ENST00000293748 PHACTR3Q96KR7 559 aa14.23□□□□□ -0.13
SYNGAP1-201ENST00000293748 SASS6Q6UVJ0 657 aa14.23□□□□□ -0.13
SYNGAP1-201ENST00000293748 RTCBQ9Y3I0 505 aaKnown RBP14.23□□□□□ -0.13
SYNGAP1-201ENST00000293748 EZH2Q15910 746 aaKnown RBP14.23□□□□□ -0.13
SYNGAP1-201ENST00000293748 IFT57Q9NWB7 429 aa14.23□□□□□ -0.13
SYNGAP1-201ENST00000293748 SMC3Q9UQE7 1217 aa14.23□□□□□ -0.13
SYNGAP1-201ENST00000293748 LOC102724428A0A0B4J2F2 783 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 SIK1P57059 783 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 RNF20Q5VTR2 975 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 PIGBQ92521 554 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 ACBD3Q9H3P7 528 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 ANO2Q9NQ90 1003 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 TOMM22Q9NS69 142 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 NOM1Q5C9Z4 860 aaKnown RBP14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 ANKRD20A12PQ8NF67 263 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 PARP4Q9UKK3 1724 aaKnown RBP14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 MNS1Q8NEH6 495 aa14.22□□□□□ -0.13
SYNGAP1-201ENST00000293748 SNRPA1P09661 255 aaKnown RBP14.21□□□□□ -0.13
SYNGAP1-201ENST00000293748 FRAT2O75474 233 aaPredicted RBP14.21□□□□□ -0.13
SYNGAP1-201ENST00000293748 ZPR1O75312 459 aa14.21□□□□□ -0.14
SYNGAP1-201ENST00000293748 CCDC173Q0VFZ6 552 aa14.21□□□□□ -0.14
SYNGAP1-201ENST00000293748 COL18A1P39060 1754 aa14.21□□□□□ -0.14
SYNGAP1-201ENST00000293748 CCDC66A2RUB6 948 aa14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 LNPKQ9C0E8 428 aa14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 LGR6Q9HBX8 967 aa14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 HOOK1Q9UJC3 728 aaKnown RBP14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 CDC45O75419 566 aa14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 RFC4P35249 363 aa14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 VPS37CA5D8V6 355 aaPredicted RBP14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 AKAP17AQ02040 695 aaKnown RBP14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 DCTN1Q14203 1278 aa14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 IL27Q8NEV9 243 aa14.2□□□□□ -0.14
SYNGAP1-201ENST00000293748 ZNF790Q6PG37 636 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 CCDC73Q6ZRK6 1079 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 BCL9O00512 1426 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 GNPATO15228 680 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 EIF2S2P20042 333 aaKnown RBP14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 SLC39A6Q13433 755 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 KIF6Q6ZMV9 814 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 SYNE3Q6ZMZ3 975 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 PKNOX2Q96KN3 472 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 HSP90B2PQ58FF3 399 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 KLHL34Q8N239 644 aa14.19□□□□□ -0.14
SYNGAP1-201ENST00000293748 PEAK1Q9H792 1746 aa14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 LETM1O95202 739 aaPredicted RBP14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 TRAPPC3LQ5T215 181 aa14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 BACH2Q9BYV9 841 aa14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 ASAP1Q9ULH1 1129 aa14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 ZNF652Q9Y2D9 606 aa14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 TRIM29Q14134 588 aa14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 GTF2E1P29083 439 aaPredicted RBP14.18□□□□□ -0.14
SYNGAP1-201ENST00000293748 WDR63Q8IWG1 891 aa14.17□□□□□ -0.14
SYNGAP1-201ENST00000293748 CPLX1O14810 134 aa14.17□□□□□ -0.14
SYNGAP1-201ENST00000293748 IL17REQ8NFR9 667 aa14.17□□□□□ -0.14
SYNGAP1-201ENST00000293748 MARCH6O60337 910 aa14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 CCDC87Q9NVE4 849 aa14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 DDX58O95786 925 aaKnown RBP14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 MCM2P49736 904 aa14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 HSP90AB4PQ58FF6 505 aa14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 CWC15Q9P013 229 aaKnown RBP14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 COL3A1P02461 1466 aaPredicted RBP14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 IFIT2P09913 472 aaKnown RBP14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 CCDC47Q96A33 483 aaKnown RBP14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 ATG3Q9NT62 314 aa14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 RGPD5Q99666 1765 aa14.16□□□□□ -0.14
SYNGAP1-201ENST00000293748 R3HDM1Q15032 1099 aaKnown RBP14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 NCBP3Q53F19 620 aaKnown RBP14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 PANK1Q8TE04 598 aa14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 CDR1P51861 262 aa14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 THUMPD2Q9BTF0 503 aaKnown RBP14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 NAT10Q9H0A0 1025 aaKnown RBP14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 THSD7AQ9UPZ6 1657 aa14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 SLC15A2Q16348 729 aa14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 CAVIN1Q6NZI2 390 aaKnown RBP14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 RNF214Q8ND24 703 aa14.15□□□□□ -0.14
SYNGAP1-201ENST00000293748 NEXNQ0ZGT2 675 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 PDE3AQ14432 1141 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 CCDC30Q5VVM6 783 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 PLEKHF1Q96S99 279 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 HDGFL1Q5TGJ6 251 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 SLC16A10Q8TF71 515 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 CAMKK2Q96RR4 588 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 CCDC27Q2M243 656 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 IL16Q14005 1332 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 RRP9O43818 475 aaKnown RBP14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 ADRA2BP18089 450 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 RABEP1Q15276 862 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 SPON1Q9HCB6 807 aa14.14□□□□□ -0.15
SYNGAP1-201ENST00000293748 DNAJC10Q8IXB1 793 aa14.13□□□□□ -0.15
SYNGAP1-201ENST00000293748 C9orf78Q9NZ63 289 aaPredicted RBP14.13□□□□□ -0.15
SYNGAP1-201ENST00000293748 RUFY1Q96T51 708 aa14.13□□□□□ -0.15
SYNGAP1-201ENST00000293748 ERC2O15083 957 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms