RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 HAND2P61296 217 aa20.09■□□□□ 0.81
SHANK1-201ENST00000293441 HMGN5P82970 282 aaKnown RBP20.09■□□□□ 0.81
SHANK1-201ENST00000293441 TSPY2A6NKD2 308 aa20.09■□□□□ 0.81
SHANK1-201ENST00000293441 LEKR1Q6ZMV7 388 aa20.09■□□□□ 0.81
SHANK1-201ENST00000293441 DNAI2Q9GZS0 605 aa20.09■□□□□ 0.81
SHANK1-201ENST00000293441 PIK3R4Q99570 1358 aa20.09■□□□□ 0.81
SHANK1-201ENST00000293441 RBM10P98175 930 aaKnown RBP20.08■□□□□ 0.81
SHANK1-201ENST00000293441 TMEM67Q5HYA8 995 aa20.08■□□□□ 0.81
SHANK1-201ENST00000293441 IQCEQ6IPM2 695 aa20.08■□□□□ 0.81
SHANK1-201ENST00000293441 FKBP15Q5T1M5 1219 aa20.08■□□□□ 0.81
SHANK1-201ENST00000293441 ATP6V1AP38606 617 aa20.08■□□□□ 0.8
SHANK1-201ENST00000293441 UBAP1LF5GYI3 381 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 LDHCP07864 332 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 ZCRB1Q8TBF4 217 aaKnown RBP20.07■□□□□ 0.8
SHANK1-201ENST00000293441 CABP5Q9NP86 173 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 NSD2O96028 1365 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 ARHGAP29Q52LW3 1261 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 KAT14Q9H8E8 782 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 DHX29Q7Z478 1369 aaKnown RBP20.07■□□□□ 0.8
SHANK1-201ENST00000293441 CACNA2D4Q7Z3S7 1137 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 HLA-DOAP06340 250 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 CCDC152Q4G0S7 254 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 TSHZ3Q63HK5 1081 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 ECHDC1Q9NTX5 307 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 BAG4O95429 457 aaKnown RBP20.07■□□□□ 0.8
SHANK1-201ENST00000293441 C8orf37Q96NL8 207 aa20.07■□□□□ 0.8
SHANK1-201ENST00000293441 GBP2P32456 591 aaPredicted RBP20.06■□□□□ 0.8
SHANK1-201ENST00000293441 PDE4BQ07343 736 aa20.06■□□□□ 0.8
SHANK1-201ENST00000293441 SPTY2D1Q68D10 685 aaPredicted RBP20.06■□□□□ 0.8
SHANK1-201ENST00000293441 RAB11FIP4Q86YS3 637 aa20.06■□□□□ 0.8
SHANK1-201ENST00000293441 DISP3Q9P2K9 1392 aa20.06■□□□□ 0.8
SHANK1-201ENST00000293441 ERLIN1O75477 346 aa20.06■□□□□ 0.8
SHANK1-201ENST00000293441 SPA17Q15506 151 aa20.05■□□□□ 0.8
SHANK1-201ENST00000293441 KDM5BQ9UGL1 1544 aa20.05■□□□□ 0.8
SHANK1-201ENST00000293441 MTERF4Q7Z6M4 381 aaKnown RBP20.05■□□□□ 0.8
SHANK1-201ENST00000293441 ANKRD13DQ6ZTN6 518 aa20.05■□□□□ 0.8
SHANK1-201ENST00000293441 LIMCH1Q9UPQ0 1083 aa20.05■□□□□ 0.8
SHANK1-201ENST00000293441 MYO1BO43795 1136 aa20.05■□□□□ 0.8
SHANK1-201ENST00000293441 MFSD6Q6ZSS7 791 aa20.05■□□□□ 0.8
SHANK1-201ENST00000293441 CCDC150Q8NCX0 1101 aa20.04■□□□□ 0.8
SHANK1-201ENST00000293441 ANO10Q9NW15 660 aa20.04■□□□□ 0.8
SHANK1-201ENST00000293441 CHPF2Q9P2E5 772 aa20.04■□□□□ 0.8
SHANK1-201ENST00000293441 CNNM3Q8NE01 707 aa20.04■□□□□ 0.8
SHANK1-201ENST00000293441 SETDB2Q96T68 719 aa20.04■□□□□ 0.8
SHANK1-201ENST00000293441 ZNF608Q9ULD9 1512 aaPredicted RBP20.04■□□□□ 0.8
SHANK1-201ENST00000293441 CCDC148Q8NFR7 591 aa20.04■□□□□ 0.8
SHANK1-201ENST00000293441 SCAND2PQ9GZW5 306 aaPredicted RBP20.04■□□□□ 0.8
SHANK1-201ENST00000293441 KIF5BP33176 963 aa20.03■□□□□ 0.8
SHANK1-201ENST00000293441 F8W031 263 aaPredicted RBP20.03■□□□□ 0.8
SHANK1-201ENST00000293441 MICU3Q86XE3 530 aa20.03■□□□□ 0.8
SHANK1-201ENST00000293441 USP16Q9Y5T5 823 aa20.03■□□□□ 0.8
SHANK1-201ENST00000293441 PPFIA3O75145 1194 aa20.03■□□□□ 0.8
SHANK1-201ENST00000293441 SLC39A6Q13433 755 aa20.03■□□□□ 0.8
SHANK1-201ENST00000293441 CETN2P41208 172 aa20.02■□□□□ 0.8
SHANK1-201ENST00000293441 SAMM50Q9Y512 469 aa20.02■□□□□ 0.8
SHANK1-201ENST00000293441 SPDYE4A6NLX3 237 aa20.02■□□□□ 0.8
SHANK1-201ENST00000293441 TOM1O60784 492 aa20.02■□□□□ 0.8
SHANK1-201ENST00000293441 ANKRD36BQ8N2N9 1353 aa20.02■□□□□ 0.8
SHANK1-201ENST00000293441 FGFR1OPO95684 399 aaKnown RBP20.02■□□□□ 0.8
SHANK1-201ENST00000293441 TMEM87AQ8NBN3 555 aa20.02■□□□□ 0.8
SHANK1-201ENST00000293441 CCDC12Q8WUD4 166 aaPredicted RBP20.02■□□□□ 0.8
SHANK1-201ENST00000293441 TAF3Q5VWG9 929 aa20.02■□□□□ 0.79
SHANK1-201ENST00000293441 CRNKL1Q9BZJ0 848 aaKnown RBP20.02■□□□□ 0.79
SHANK1-201ENST00000293441 CCDC97Q96F63 343 aaPredicted RBP20.02■□□□□ 0.79
SHANK1-201ENST00000293441 THOC2Q8NI27 1593 aaKnown RBP20.02■□□□□ 0.79
SHANK1-201ENST00000293441 CCDC183Q5T5S1 534 aa20.01■□□□□ 0.79
SHANK1-201ENST00000293441 CALML4Q96GE6 196 aa20.01■□□□□ 0.79
SHANK1-201ENST00000293441 PPIP5K1Q6PFW1 1433 aa20.01■□□□□ 0.79
SHANK1-201ENST00000293441 URB2Q14146 1524 aaKnown RBP20.01■□□□□ 0.79
SHANK1-201ENST00000293441 IARSP41252 1262 aaKnown RBP20.01■□□□□ 0.79
SHANK1-201ENST00000293441 GSTO1P78417 241 aa20.01■□□□□ 0.79
SHANK1-201ENST00000293441 PLEKHH1Q9ULM0 1364 aa20.01■□□□□ 0.79
SHANK1-201ENST00000293441 GJB2P29033 226 aa20.01■□□□□ 0.79
SHANK1-201ENST00000293441 IQSEC3Q9UPP2 1182 aaPredicted RBP20.01■□□□□ 0.79
SHANK1-201ENST00000293441 EIF3JO75822 258 aaKnown RBP20.01■□□□□ 0.79
SHANK1-201ENST00000293441 METAP2P50579 478 aaKnown RBP eCLIP20.01■□□□□ 0.79
SHANK1-201ENST00000293441 SLC26A6Q9BXS9 759 aa20.01■□□□□ 0.79
SHANK1-201ENST00000293441 XAGE3Q8WTP9 111 aa20■□□□□ 0.79
SHANK1-201ENST00000293441 NCOA7Q8NI08 942 aa20■□□□□ 0.79
SHANK1-201ENST00000293441 NPHP3Q7Z494 1330 aa20■□□□□ 0.79
SHANK1-201ENST00000293441 FSIP1Q8NA03 581 aa20■□□□□ 0.79
SHANK1-201ENST00000293441 UQCRFS1P1P0C7P4 283 aa19.99■□□□□ 0.79
SHANK1-201ENST00000293441 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.99■□□□□ 0.79
SHANK1-201ENST00000293441 ANAPC15P60006 121 aa19.99■□□□□ 0.79
SHANK1-201ENST00000293441 CABLES1Q8TDN4 633 aa19.99■□□□□ 0.79
SHANK1-201ENST00000293441 NEK1Q96PY6 1258 aa19.99■□□□□ 0.79
SHANK1-201ENST00000293441 VPS36Q86VN1 386 aa19.99■□□□□ 0.79
SHANK1-201ENST00000293441 TCP11L1Q9NUJ3 509 aa19.99■□□□□ 0.79
SHANK1-201ENST00000293441 DNA2P51530 1060 aa19.98■□□□□ 0.79
SHANK1-201ENST00000293441 TOP1P11387 765 aaKnown RBP19.98■□□□□ 0.79
SHANK1-201ENST00000293441 CKAP2LQ8IYA6 745 aa19.98■□□□□ 0.79
SHANK1-201ENST00000293441 TTC21AQ8NDW8 1320 aa19.98■□□□□ 0.79
SHANK1-201ENST00000293441 COPS6Q7L5N1 327 aa19.98■□□□□ 0.79
SHANK1-201ENST00000293441 NUP88Q99567 741 aaPredicted RBP19.98■□□□□ 0.79
SHANK1-201ENST00000293441 PRKCSHP14314 528 aaPredicted RBP19.98■□□□□ 0.79
SHANK1-201ENST00000293441 TFIP11Q9UBB9 837 aaKnown RBP19.98■□□□□ 0.79
SHANK1-201ENST00000293441 CYP7A1P22680 504 aa19.98■□□□□ 0.79
SHANK1-201ENST00000293441 SFPQP23246 707 aaKnown RBP eCLIP19.98■□□□□ 0.79
SHANK1-201ENST00000293441 TBC1D9Q6ZT07 1266 aa19.98■□□□□ 0.79
SHANK1-201ENST00000293441 CPLX3Q8WVH0 158 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms