RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 GAS2L3Q86XJ1 694 aa12.72□□□□□ -0.37
UPF3B-201ENST00000276201 ITPRIPQ8IWB1 547 aa12.72□□□□□ -0.37
UPF3B-201ENST00000276201 TUBGCP6Q96RT7 1819 aa12.72□□□□□ -0.37
UPF3B-201ENST00000276201 TMEM57Q8N5G2 664 aa12.72□□□□□ -0.37
UPF3B-201ENST00000276201 SIPA1L3O60292 1781 aaPredicted RBP12.72□□□□□ -0.37
UPF3B-201ENST00000276201 GOLGA6L22H0YM25 854 aa12.71□□□□□ -0.37
UPF3B-201ENST00000276201 ZNF445P59923 1031 aa12.71□□□□□ -0.37
UPF3B-201ENST00000276201 SPRYD3Q8NCJ5 442 aa12.71□□□□□ -0.37
UPF3B-201ENST00000276201 SLC4A9Q96Q91 983 aa12.71□□□□□ -0.37
UPF3B-201ENST00000276201 NOB1Q9ULX3 412 aaKnown RBP12.71□□□□□ -0.37
UPF3B-201ENST00000276201 DLG5Q8TDM6 1919 aa12.71□□□□□ -0.37
UPF3B-201ENST00000276201 ZNF831Q5JPB2 1677 aa12.71□□□□□ -0.37
UPF3B-201ENST00000276201 ITPK1Q13572 414 aa12.71□□□□□ -0.38
UPF3B-201ENST00000276201 ZSCAN30Q86W11 494 aa12.71□□□□□ -0.38
UPF3B-201ENST00000276201 PKNOX2Q96KN3 472 aa12.71□□□□□ -0.38
UPF3B-201ENST00000276201 PDGFDQ9GZP0 370 aaPredicted RBP12.71□□□□□ -0.38
UPF3B-201ENST00000276201 PDCL3Q9H2J4 239 aa12.71□□□□□ -0.38
UPF3B-201ENST00000276201 OFD1O75665 1012 aa12.7□□□□□ -0.38
UPF3B-201ENST00000276201 NFE2L2Q16236 605 aa12.7□□□□□ -0.38
UPF3B-201ENST00000276201 MCM10Q7L590 875 aa12.7□□□□□ -0.38
UPF3B-201ENST00000276201 C4BP0C0L5 1744 aa12.7□□□□□ -0.38
UPF3B-201ENST00000276201 QSER1Q2KHR3 1735 aa12.7□□□□□ -0.38
UPF3B-201ENST00000276201 SLC39A6Q13433 755 aa12.7□□□□□ -0.38
UPF3B-201ENST00000276201 LINC00116Q8NCU8 138 aa12.7□□□□□ -0.38
UPF3B-201ENST00000276201 RBM42Q9BTD8 480 aaKnown RBP12.7□□□□□ -0.38
UPF3B-201ENST00000276201 KCPQ6ZWJ8 1503 aa12.69□□□□□ -0.38
UPF3B-201ENST00000276201 PTCD1O75127 700 aaKnown RBP12.69□□□□□ -0.38
UPF3B-201ENST00000276201 ATP6V1AP38606 617 aa12.69□□□□□ -0.38
UPF3B-201ENST00000276201 TEFQ10587 303 aa12.69□□□□□ -0.38
UPF3B-201ENST00000276201 DCTN1Q14203 1278 aa12.69□□□□□ -0.38
UPF3B-201ENST00000276201 LRP5O75197 1615 aa12.69□□□□□ -0.38
UPF3B-201ENST00000276201 HTATSF1O43719 755 aaKnown RBP12.69□□□□□ -0.38
UPF3B-201ENST00000276201 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.69□□□□□ -0.38
UPF3B-201ENST00000276201 RTF1Q92541 710 aaKnown RBP12.69□□□□□ -0.38
UPF3B-201ENST00000276201 TSR2Q969E8 191 aaKnown RBP12.69□□□□□ -0.38
UPF3B-201ENST00000276201 UBR2Q8IWV8 1755 aa12.68□□□□□ -0.38
UPF3B-201ENST00000276201 CICQ96RK0 1608 aaPredicted RBP12.68□□□□□ -0.38
UPF3B-201ENST00000276201 PNPLA7Q6ZV29 1317 aa12.68□□□□□ -0.38
UPF3B-201ENST00000276201 TJP1Q07157 1748 aa12.68□□□□□ -0.38
UPF3B-201ENST00000276201 COL5A3P25940 1745 aaPredicted RBP12.68□□□□□ -0.38
UPF3B-201ENST00000276201 MAP7D2Q96T17 732 aa12.67□□□□□ -0.38
UPF3B-201ENST00000276201 TFCP2L1Q9NZI6 479 aa12.67□□□□□ -0.38
UPF3B-201ENST00000276201 NUCB2P80303 420 aa12.67□□□□□ -0.38
UPF3B-201ENST00000276201 ANP32BQ92688 251 aaKnown RBP12.67□□□□□ -0.38
UPF3B-201ENST00000276201 CYP2E1P05181 493 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-201ENST00000276201 NASPP49321 788 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-201ENST00000276201 RABEP1Q15276 862 aa12.66□□□□□ -0.38
UPF3B-201ENST00000276201 UBR3Q6ZT12 1888 aa12.66□□□□□ -0.38
UPF3B-201ENST00000276201 ZBTB7BO15156 539 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-201ENST00000276201 CDC45O75419 566 aa12.66□□□□□ -0.38
UPF3B-201ENST00000276201 BAG4O95429 457 aaKnown RBP12.66□□□□□ -0.38
UPF3B-201ENST00000276201 MCM5P33992 734 aa12.66□□□□□ -0.38
UPF3B-201ENST00000276201 AMIGO3Q86WK7 504 aa12.66□□□□□ -0.38
UPF3B-201ENST00000276201 PDLIM2Q96JY6 352 aa12.66□□□□□ -0.38
UPF3B-201ENST00000276201 SRCAPQ6ZRS2 3230 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 ZNF500O60304 480 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-201ENST00000276201 HMGB2P26583 209 aaKnown RBP12.65□□□□□ -0.38
UPF3B-201ENST00000276201 TBC1D9Q6ZT07 1266 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 AK7Q96M32 723 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 THUMPD2Q9BTF0 503 aaKnown RBP12.65□□□□□ -0.38
UPF3B-201ENST00000276201 CWC22Q9HCG8 908 aaKnown RBP12.65□□□□□ -0.38
UPF3B-201ENST00000276201 ABCC4O15439 1325 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 ZBTB7AO95365 584 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 RIPK4P57078 832 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 CALD1Q05682 793 aaKnown RBP12.65□□□□□ -0.38
UPF3B-201ENST00000276201 ZNF790Q6PG37 636 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 LNPKQ9C0E8 428 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 ZMYND15Q9H091 742 aa12.65□□□□□ -0.38
UPF3B-201ENST00000276201 BTBD11A6QL63 1104 aa12.64□□□□□ -0.39
UPF3B-201ENST00000276201 SMIM5Q71RC9 77 aa12.64□□□□□ -0.39
UPF3B-201ENST00000276201 ARXQ96QS3 562 aa12.64□□□□□ -0.39
UPF3B-201ENST00000276201 KCNQ3O43525 872 aa12.64□□□□□ -0.39
UPF3B-201ENST00000276201 COL23A1Q86Y22 540 aaPredicted RBP12.64□□□□□ -0.39
UPF3B-201ENST00000276201 DNAJC10Q8IXB1 793 aa12.64□□□□□ -0.39
UPF3B-201ENST00000276201 TTC5Q8N0Z6 440 aa12.64□□□□□ -0.39
UPF3B-201ENST00000276201 ZNF496Q96IT1 587 aaPredicted RBP12.64□□□□□ -0.39
UPF3B-201ENST00000276201 CNTNAP4Q9C0A0 1308 aa12.64□□□□□ -0.39
UPF3B-201ENST00000276201 MYH14Q7Z406 1995 aaKnown RBP12.63□□□□□ -0.39
UPF3B-201ENST00000276201 VSIG10Q8N0Z9 540 aa12.63□□□□□ -0.39
UPF3B-201ENST00000276201 MRPL50Q8N5N7 158 aaKnown RBP12.63□□□□□ -0.39
UPF3B-201ENST00000276201 GNPATO15228 680 aa12.63□□□□□ -0.39
UPF3B-201ENST00000276201 SSFA2P28290 1259 aa12.63□□□□□ -0.39
UPF3B-201ENST00000276201 KIAA1211Q6ZU35 1233 aa12.63□□□□□ -0.39
UPF3B-201ENST00000276201 SPON1Q9HCB6 807 aa12.63□□□□□ -0.39
UPF3B-201ENST00000276201 NOL7Q9UMY1 257 aaKnown RBP12.63□□□□□ -0.39
UPF3B-201ENST00000276201 PHF14O94880 888 aa12.62□□□□□ -0.39
UPF3B-201ENST00000276201 CD2BP2O95400 341 aaKnown RBP12.62□□□□□ -0.39
UPF3B-201ENST00000276201 CRKLP46109 303 aaKnown RBP12.62□□□□□ -0.39
UPF3B-201ENST00000276201 TAF7Q15545 349 aaPredicted RBP12.62□□□□□ -0.39
UPF3B-201ENST00000276201 RC3H1Q5TC82 1133 aaKnown RBP12.62□□□□□ -0.39
UPF3B-201ENST00000276201 ATF5Q9Y2D1 282 aaPredicted RBP12.62□□□□□ -0.39
UPF3B-201ENST00000276201 AK9Q5TCS8 1911 aa12.62□□□□□ -0.39
UPF3B-201ENST00000276201 KDM3BQ7LBC6 1761 aa12.62□□□□□ -0.39
UPF3B-201ENST00000276201 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.62□□□□□ -0.39
UPF3B-201ENST00000276201 MTERF4Q7Z6M4 381 aaKnown RBP12.62□□□□□ -0.39
UPF3B-201ENST00000276201 MTFR1LQ9H019 292 aa12.62□□□□□ -0.39
UPF3B-201ENST00000276201 HEG1Q9ULI3 1381 aa12.61□□□□□ -0.39
UPF3B-201ENST00000276201 CYP19A1P11511 503 aaPredicted RBP12.61□□□□□ -0.39
UPF3B-201ENST00000276201 LMOD3Q0VAK6 560 aa12.61□□□□□ -0.39
UPF3B-201ENST00000276201 FLAD1Q8NFF5 587 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms