RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 NBPF6Q5VWK0 638 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 NBPF5PQ86XG9 351 aaPredicted RBP18.1■□□□□ 0.49
TIMP3-201ENST00000266085 NBPF4Q96M43 638 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 TBC1D2Q9BYX2 928 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 BCL11BQ9C0K0 894 aaPredicted RBP18.1■□□□□ 0.49
TIMP3-201ENST00000266085 ATP8B2P98198 1209 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 NUP62CLQ9H1M0 184 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 R3HCC1Q9Y3T6 440 aaKnown RBP18.1■□□□□ 0.49
TIMP3-201ENST00000266085 ABCA8O94911 1581 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 GRPEL1Q9HAV7 217 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 ZNF287Q9HBT7 754 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 BTG4Q9NY30 223 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 MAGEC2Q9UBF1 373 aaPredicted RBP18.1■□□□□ 0.49
TIMP3-201ENST00000266085 LIMCH1Q9UPQ0 1083 aa18.1■□□□□ 0.49
TIMP3-201ENST00000266085 DCAF8L1A6NGE4 600 aa18.09■□□□□ 0.49
TIMP3-201ENST00000266085 RNMTO43148 476 aaKnown RBP18.09■□□□□ 0.49
TIMP3-201ENST00000266085 SMARCC1Q92922 1105 aaPredicted RBP18.09■□□□□ 0.49
TIMP3-201ENST00000266085 BRPF1P55201 1214 aaPredicted RBP18.09■□□□□ 0.49
TIMP3-201ENST00000266085 RANBP6O60518 1105 aaKnown RBP18.08■□□□□ 0.49
TIMP3-201ENST00000266085 CWF19L2Q2TBE0 894 aaKnown RBP18.08■□□□□ 0.49
TIMP3-201ENST00000266085 LARP6Q9BRS8 491 aaKnown RBP18.08■□□□□ 0.49
TIMP3-201ENST00000266085 SERPINC1P01008 464 aa18.08■□□□□ 0.49
TIMP3-201ENST00000266085 PDE1AP54750 535 aa18.08■□□□□ 0.49
TIMP3-201ENST00000266085 CCDC82Q8N4S0 544 aa18.08■□□□□ 0.49
TIMP3-201ENST00000266085 DACH1Q9UI36 760 aa18.08■□□□□ 0.48
TIMP3-201ENST00000266085 CCDC196A0A1B0GTZ2 297 aa18.08■□□□□ 0.48
TIMP3-201ENST00000266085 SDSP20132 328 aa18.08■□□□□ 0.48
TIMP3-201ENST00000266085 PTPRTO14522 1441 aa18.08■□□□□ 0.48
TIMP3-201ENST00000266085 PLEKHG3A1L390 1219 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 SBNO1A3KN83 1393 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 STIM1Q13586 685 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 SIRT1Q96EB6 747 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 CCDC152Q4G0S7 254 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 CT47A1Q5JQC4 288 aaPredicted RBP18.07■□□□□ 0.48
TIMP3-201ENST00000266085 SPC24Q8NBT2 197 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 SMARCE1Q969G3 411 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 BRPF3Q9ULD4 1205 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 LMTK3Q96Q04 1460 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 CEP57L1Q8IYX8 460 aa18.07■□□□□ 0.48
TIMP3-201ENST00000266085 CRACR2BQ8N4Y2 399 aaPredicted RBP18.07■□□□□ 0.48
TIMP3-201ENST00000266085 PHAXQ9H814 394 aaKnown RBP18.07■□□□□ 0.48
TIMP3-201ENST00000266085 PA2G4Q9UQ80 394 aaKnown RBP18.07■□□□□ 0.48
TIMP3-201ENST00000266085 IQCA1Q86XH1 822 aa18.06■□□□□ 0.48
TIMP3-201ENST00000266085 ZFYVE16Q7Z3T8 1539 aa18.06■□□□□ 0.48
TIMP3-201ENST00000266085 SCAND2PQ9GZW5 306 aaPredicted RBP18.06■□□□□ 0.48
TIMP3-201ENST00000266085 ARHGEF5Q12774 1597 aa18.06■□□□□ 0.48
TIMP3-201ENST00000266085 MPHOSPH10O00566 681 aaKnown RBP18.06■□□□□ 0.48
TIMP3-201ENST00000266085 TTF1Q15361 905 aaPredicted RBP18.06■□□□□ 0.48
TIMP3-201ENST00000266085 NIP7Q9Y221 180 aaKnown RBP eCLIP18.06■□□□□ 0.48
TIMP3-201ENST00000266085 ARGLU1Q9NWB6 273 aaPredicted RBP18.05■□□□□ 0.48
TIMP3-201ENST00000266085 HMGN5P82970 282 aaKnown RBP18.05■□□□□ 0.48
TIMP3-201ENST00000266085 ATP2B3Q16720 1220 aa18.05■□□□□ 0.48
TIMP3-201ENST00000266085 C16orf71Q8IYS4 520 aaPredicted RBP18.05■□□□□ 0.48
TIMP3-201ENST00000266085 DDX17Q92841 729 aaKnown RBP18.05■□□□□ 0.48
TIMP3-201ENST00000266085 HAND2P61296 217 aa18.05■□□□□ 0.48
TIMP3-201ENST00000266085 TBC1D32Q96NH3 1257 aa18.05■□□□□ 0.48
TIMP3-201ENST00000266085 SETDB2Q96T68 719 aa18.05■□□□□ 0.48
TIMP3-201ENST00000266085 IFIT3O14879 490 aaKnown RBP18.04■□□□□ 0.48
TIMP3-201ENST00000266085 RNF41Q9H4P4 317 aaPredicted RBP18.04■□□□□ 0.48
TIMP3-201ENST00000266085 DDX21Q9NR30 783 aaKnown RBP eCLIP18.04■□□□□ 0.48
TIMP3-201ENST00000266085 ZBTB40Q9NUA8 1239 aa18.04■□□□□ 0.48
TIMP3-201ENST00000266085 DZIP3Q86Y13 1208 aaKnown RBP18.04■□□□□ 0.48
TIMP3-201ENST00000266085 CTCFLQ8NI51 663 aaPredicted RBP18.04■□□□□ 0.48
TIMP3-201ENST00000266085 DHX8Q14562 1220 aaKnown RBP18.04■□□□□ 0.48
TIMP3-201ENST00000266085 ZNF444Q8N0Y2 327 aaPredicted RBP18.04■□□□□ 0.48
TIMP3-201ENST00000266085 ZHX3Q9H4I2 956 aa18.04■□□□□ 0.48
TIMP3-201ENST00000266085 NLRP3Q96P20 1036 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 IL15P40933 162 aaPredicted RBP18.03■□□□□ 0.48
TIMP3-201ENST00000266085 G2E3Q7L622 706 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 C8orf76Q96K31 380 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 GUCY1B3Q02153 619 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 MAP3K11Q16584 847 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 CEP85Q6P2H3 762 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 PCDH11XQ9BZA7 1347 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 PCDH11YQ9BZA8 1340 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 ANKRD18AQ8IVF6 992 aa18.03■□□□□ 0.48
TIMP3-201ENST00000266085 IQSEC3Q9UPP2 1182 aaPredicted RBP18.03■□□□□ 0.48
TIMP3-201ENST00000266085 CCT2P78371 535 aaKnown RBP18.02■□□□□ 0.48
TIMP3-201ENST00000266085 TTLL5Q6EMB2 1281 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 ZNF790Q6PG37 636 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 DCTPP1Q9H773 170 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 LGR6Q9HBX8 967 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 SLAIN2Q9P270 581 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 TRIM35Q9UPQ4 493 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 UQCRFS1P1P0C7P4 283 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 SLC12A7Q9Y666 1083 aa18.02■□□□□ 0.48
TIMP3-201ENST00000266085 CCP110O43303 1012 aa18.02■□□□□ 0.47
TIMP3-201ENST00000266085 BMP2KQ9NSY1 1161 aaPredicted RBP18.02■□□□□ 0.47
TIMP3-201ENST00000266085 SSBP05455 408 aaKnown RBP eCLIP18.02■□□□□ 0.47
TIMP3-201ENST00000266085 LDHCP07864 332 aa18.02■□□□□ 0.47
TIMP3-201ENST00000266085 PRM3Q9NNZ6 103 aa18.02■□□□□ 0.47
TIMP3-201ENST00000266085 ZNF622Q969S3 477 aaKnown RBP eCLIP18.01■□□□□ 0.47
TIMP3-201ENST00000266085 CEP131Q9UPN4 1083 aa18.01■□□□□ 0.47
TIMP3-201ENST00000266085 SYCE3A1L190 88 aa18.01■□□□□ 0.47
TIMP3-201ENST00000266085 GOLGA8BA8MQT2 603 aa18.01■□□□□ 0.47
TIMP3-201ENST00000266085 CHL1O00533 1208 aa18.01■□□□□ 0.47
TIMP3-201ENST00000266085 MPNDQ8N594 471 aa18.01■□□□□ 0.47
TIMP3-201ENST00000266085 ZNHIT6Q9NWK9 470 aaKnown RBP18.01■□□□□ 0.47
TIMP3-201ENST00000266085 SLF2Q8IX21 1173 aa18.01■□□□□ 0.47
TIMP3-201ENST00000266085 MYO5CQ9NQX4 1742 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms