RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 ARHGEF25Q86VW2 580 aa18.37■□□□□ 0.53
DDX56-201ENST00000258772 RUFY2Q8WXA3 655 aa18.37■□□□□ 0.53
DDX56-201ENST00000258772 DIAPH3Q9NSV4 1193 aa18.37■□□□□ 0.53
DDX56-201ENST00000258772 ECHDC1Q9NTX5 307 aa18.37■□□□□ 0.53
DDX56-201ENST00000258772 HEG1Q9ULI3 1381 aa18.36■□□□□ 0.53
DDX56-201ENST00000258772 HDAC5Q9UQL6 1122 aa18.36■□□□□ 0.53
DDX56-201ENST00000258772 NCAPD2Q15021 1401 aa18.36■□□□□ 0.53
DDX56-201ENST00000258772 ERC1Q8IUD2 1116 aa18.35■□□□□ 0.53
DDX56-201ENST00000258772 PA2G4Q9UQ80 394 aaKnown RBP18.35■□□□□ 0.53
DDX56-201ENST00000258772 PXDNQ92626 1479 aa18.35■□□□□ 0.53
DDX56-201ENST00000258772 CWF19L2Q2TBE0 894 aaKnown RBP18.35■□□□□ 0.53
DDX56-201ENST00000258772 LARP6Q9BRS8 491 aaKnown RBP18.35■□□□□ 0.53
DDX56-201ENST00000258772 TSPY26PQ9H489 355 aa18.35■□□□□ 0.53
DDX56-201ENST00000258772 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.35■□□□□ 0.53
DDX56-201ENST00000258772 OFD1O75665 1012 aa18.34■□□□□ 0.53
DDX56-201ENST00000258772 IFIT2P09913 472 aaKnown RBP18.34■□□□□ 0.53
DDX56-201ENST00000258772 TMEM87AQ8NBN3 555 aa18.34■□□□□ 0.53
DDX56-201ENST00000258772 RNF214Q8ND24 703 aa18.34■□□□□ 0.53
DDX56-201ENST00000258772 OVOS2A0A0G2JMS6 1433 aa18.34■□□□□ 0.53
DDX56-201ENST00000258772 PRAMEF22A3QJZ6 481 aa18.34■□□□□ 0.53
DDX56-201ENST00000258772 ZSCAN22P10073 491 aaPredicted RBP18.34■□□□□ 0.53
DDX56-201ENST00000258772 CASTP20810 708 aaKnown RBP18.34■□□□□ 0.53
DDX56-201ENST00000258772 PTH1RQ03431 593 aa18.34■□□□□ 0.53
DDX56-201ENST00000258772 GPATCH3Q96I76 525 aa18.34■□□□□ 0.53
DDX56-201ENST00000258772 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.34■□□□□ 0.53
DDX56-201ENST00000258772 STX6O43752 255 aa18.33■□□□□ 0.53
DDX56-201ENST00000258772 CPA1P15085 419 aa18.33■□□□□ 0.53
DDX56-201ENST00000258772 SYT1P21579 422 aa18.33■□□□□ 0.53
DDX56-201ENST00000258772 HYPKQ9NX55 129 aa18.33■□□□□ 0.53
DDX56-201ENST00000258772 PHF14O94880 888 aa18.33■□□□□ 0.52
DDX56-201ENST00000258772 ANKRD24Q8TF21 1146 aa18.33■□□□□ 0.52
DDX56-201ENST00000258772 LINS1Q8NG48 757 aa18.32■□□□□ 0.52
DDX56-201ENST00000258772 KCNB2Q92953 911 aa18.32■□□□□ 0.52
DDX56-201ENST00000258772 EVI5LQ96CN4 794 aa18.32■□□□□ 0.52
DDX56-201ENST00000258772 SMC3Q9UQE7 1217 aa18.32■□□□□ 0.52
DDX56-201ENST00000258772 ZNF500O60304 480 aaPredicted RBP18.32■□□□□ 0.52
DDX56-201ENST00000258772 ORAI2Q96SN7 254 aa18.32■□□□□ 0.52
DDX56-201ENST00000258772 CNPY2Q9Y2B0 182 aa18.32■□□□□ 0.52
DDX56-201ENST00000258772 GRM8O00222 908 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 ADCK5Q3MIX3 580 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 VPS53Q5VIR6 699 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 PRPF40BQ6NWY9 871 aaKnown RBP18.31■□□□□ 0.52
DDX56-201ENST00000258772 AACSQ86V21 672 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 KAZALD1Q96I82 304 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 TM6SF1Q9BZW5 370 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 UTYO14607 1347 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 LARGE1O95461 756 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 TPM2P07951 284 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 XPCQ01831 940 aaPredicted RBP18.31■□□□□ 0.52
DDX56-201ENST00000258772 SUCLG2Q96I99 432 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 JAKMIP1Q96N16 626 aaKnown RBP18.31■□□□□ 0.52
DDX56-201ENST00000258772 ZSWIM6Q9HCJ5 1215 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 PDRG1Q9NUG6 133 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 ZKSCAN5Q9Y2L8 839 aa18.31■□□□□ 0.52
DDX56-201ENST00000258772 SASH1O94885 1247 aa18.3■□□□□ 0.52
DDX56-201ENST00000258772 F13A1P00488 732 aa18.3■□□□□ 0.52
DDX56-201ENST00000258772 NECTIN1Q15223 517 aa18.3■□□□□ 0.52
DDX56-201ENST00000258772 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.3■□□□□ 0.52
DDX56-201ENST00000258772 SLIT3O75094 1523 aa18.3■□□□□ 0.52
DDX56-201ENST00000258772 SIPA1L3O60292 1781 aaPredicted RBP18.3■□□□□ 0.52
DDX56-201ENST00000258772 DDX58O95786 925 aaKnown RBP18.29■□□□□ 0.52
DDX56-201ENST00000258772 DDX21Q9NR30 783 aaKnown RBP eCLIP18.29■□□□□ 0.52
DDX56-201ENST00000258772 CCDC39Q9UFE4 941 aa18.29■□□□□ 0.52
DDX56-201ENST00000258772 AXIN2Q9Y2T1 843 aa18.29■□□□□ 0.52
DDX56-201ENST00000258772 CYP46A1Q9Y6A2 500 aa18.29■□□□□ 0.52
DDX56-201ENST00000258772 MCM5P33992 734 aa18.29■□□□□ 0.52
DDX56-201ENST00000258772 G3BP1Q13283 466 aaKnown RBP eCLIP18.29■□□□□ 0.525e-8■□□□□ 8.8
DDX56-201ENST00000258772 EAF2Q96CJ1 260 aaPredicted RBP18.29■□□□□ 0.52
DDX56-201ENST00000258772 ZSCAN31Q96LW9 406 aaPredicted RBP18.29■□□□□ 0.52
DDX56-201ENST00000258772 BICC1Q9H694 974 aaKnown RBP18.29■□□□□ 0.52
DDX56-201ENST00000258772 ATP6V1DQ9Y5K8 247 aa18.29■□□□□ 0.52
DDX56-201ENST00000258772 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.29■□□□□ 0.52
DDX56-201ENST00000258772 CCDC171Q6TFL3 1326 aa18.28■□□□□ 0.52
DDX56-201ENST00000258772 LMOD2Q6P5Q4 547 aa18.28■□□□□ 0.52
DDX56-201ENST00000258772 UBE2HP62256 183 aa18.28■□□□□ 0.52
DDX56-201ENST00000258772 AIMP1Q12904 312 aaKnown RBP18.28■□□□□ 0.52
DDX56-201ENST00000258772 PDIA6Q15084 440 aa18.28■□□□□ 0.52
DDX56-201ENST00000258772 CCDC183Q5T5S1 534 aa18.28■□□□□ 0.52
DDX56-201ENST00000258772 CCDC83Q8IWF9 413 aa18.28■□□□□ 0.52
DDX56-201ENST00000258772 SH2B1Q9NRF2 756 aaPredicted RBP18.28■□□□□ 0.52
DDX56-201ENST00000258772 GJB2P29033 226 aa18.27■□□□□ 0.52
DDX56-201ENST00000258772 HIP1O00291 1037 aa18.27■□□□□ 0.51
DDX56-201ENST00000258772 ZKSCAN1P17029 563 aaPredicted RBP18.27■□□□□ 0.51
DDX56-201ENST00000258772 CCDC8Q9H0W5 538 aaPredicted RBP18.27■□□□□ 0.51
DDX56-201ENST00000258772 FAM184AQ8NB25 1140 aa18.26■□□□□ 0.51
DDX56-201ENST00000258772 MAP4K1Q92918 833 aa18.26■□□□□ 0.51
DDX56-201ENST00000258772 FAM227BQ96M60 508 aa18.26■□□□□ 0.51
DDX56-201ENST00000258772 RBM8AQ9Y5S9 174 aaKnown RBP18.26■□□□□ 0.51
DDX56-201ENST00000258772 CAMTA1Q9Y6Y1 1673 aa18.26■□□□□ 0.51
DDX56-201ENST00000258772 LETM1O95202 739 aaPredicted RBP18.26■□□□□ 0.51
DDX56-201ENST00000258772 IGKV5-2P06315 115 aa18.26■□□□□ 0.51
DDX56-201ENST00000258772 NMIQ13287 307 aaPredicted RBP18.26■□□□□ 0.51
DDX56-201ENST00000258772 UVSSAQ2YD98 709 aa18.26■□□□□ 0.51
DDX56-201ENST00000258772 CREB3L3Q68CJ9 461 aa18.26■□□□□ 0.51
DDX56-201ENST00000258772 TERF1P54274 439 aa18.25■□□□□ 0.51
DDX56-201ENST00000258772 ME3Q16798 604 aa18.25■□□□□ 0.51
DDX56-201ENST00000258772 MTMR6Q9Y217 621 aa18.25■□□□□ 0.51
DDX56-201ENST00000258772 ADAMTS7Q9UKP4 1686 aa18.25■□□□□ 0.51
DDX56-201ENST00000258772 RRP9O43818 475 aaKnown RBP18.24■□□□□ 0.51
DDX56-201ENST00000258772 RIC3Q7Z5B4 369 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms