RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CCDC71LQ8N9Z2 235 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 AQP11Q8NBQ7 271 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 OR2T33Q8NG76 320 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 OR4F6Q8NGB9 312 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 KCNC2Q96PR1 638 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PINK1Q9BXM7 581 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 NUDT15Q9NV35 164 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 HES2Q9Y543 173 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 LEFTY2O00292 366 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 XRCC1P18887 633 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ITPKBP27987 946 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CDH13P55290 713 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 GNG2P59768 71 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TEKQ02763 1124 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 PLP2Q04941 152 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 VEZF1Q14119 521 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 DUSP6Q16828 381 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 C22orf39Q6P5X5 142 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TSPYL5Q86VY4 417 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 KIF18BQ86Y91 864 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 DEFB124Q8NES8 71 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 UBTD2Q8WUN7 234 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 MYRFLQ96LU7 910 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 DEFB126Q9BYW3 111 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TOR3AQ9H497 397 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 C12orf4Q9NQ89 552 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ABCB8Q9NUT2 735 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 FAIMQ9NVQ4 179 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 KCNN3Q9UGI6 736 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 SRPK3Q9UPE1 567 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 MRPS7Q9Y2R9 242 aaKnown RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TEX51A0A1B0GUA7 166 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 C17orf113A0A1B0GUU1 675 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TCRBV7S2A1N4TA0A589 114 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 FTCDNL1E5RQL4 147 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 RNASET2O00584 256 aaKnown RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 RNGTTO60942 597 aaKnown RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ATE1O95260 518 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CST3P01034 146 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 DCNP07585 359 aaKnown RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 HOXB9P17482 250 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TIA1P31483 386 aaKnown RBP eCLIP7.48□□□□□ -1.212e-6■■□□□ 12
VPS13D-211ENST00000543710 CDH11P55287 796 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 C4orf46Q504U0 113 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 LIX1LQ8IVB5 337 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 SLC5A8Q8N695 610 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ZSCAN4Q8NAM6 433 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 PLA2G15Q8NCC3 412 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CHST4Q8NCG5 386 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 OR8J1Q8NGP2 316 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 COQ8AQ8NI60 647 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 THAP4Q8WY91 577 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 DDIT4LQ96D03 193 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CNN2Q99439 309 aaKnown RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 MED17Q9NVC6 651 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 KIF13AQ9H1H9 1805 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CDHR4A6H8M9 788 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 GFRA2O00451 464 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 MSI1O43347 362 aaKnown RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CD48P09326 243 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF865P0CJ78 1059 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CKMT1AP12532 417 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 IRF2P14316 349 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ALDH3B2P48448 385 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 OGDHQ02218 1023 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 LSAMPQ13449 338 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 RAB39AQ14964 217 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 FAM205BPQ63HN1 556 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 HMBOX1Q6NT76 420 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ATP6V1C2Q8NEY4 427 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 SHKBP1Q8TBC3 707 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 FAM46BQ96A09 425 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 FBXL8Q96CD0 374 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 PHB2Q99623 299 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 GORASP2Q9H8Y8 452 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF304Q9HCX3 659 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 RAB19A4D1S5 217 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 MEGF11A6BM72 1044 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 B4GAT1O43505 415 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 WDPCPO95876 746 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 P04436 131 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ITGB1P05556 798 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ATF4P18848 351 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 EFNA1P20827 205 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 FRKP42685 505 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 PREPP48147 710 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CLDN8P56748 225 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 MEF2AQ02078 507 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 COL28A1Q2UY09 1125 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 GGTA1PQ4G0N0 100 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 OR52E8Q6IFG1 317 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 BLOC1S3Q6QNY0 202 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ASRGL1Q7L266 308 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 SERPINA11Q86U17 422 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 OR5L2Q8NGL0 311 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF516Q92618 1163 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 MFSD3Q96ES6 412 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 DHRS4Q9BTZ2 278 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 BTBD2Q9BX70 525 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 KATNBL1Q9H079 304 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms