RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W ALF1P53904 254 aa3.54□□□□□ -1.84
USE1YGL098W SFB2P53953 876 aa3.54□□□□□ -1.84
USE1YGL098W YML119WQ03208 357 aa3.54□□□□□ -1.84
USE1YGL098W YML108WQ03759 105 aa3.54□□□□□ -1.84
USE1YGL098W MRD1Q06106 887 aaKnown RBP3.54□□□□□ -1.84
USE1YGL098W SFH1Q06168 426 aa3.54□□□□□ -1.84
USE1YGL098W ATG26Q06321 1198 aa3.54□□□□□ -1.84
USE1YGL098W RTT109Q07794 436 aa3.54□□□□□ -1.84
USE1YGL098W BDS1Q08347 646 aa3.54□□□□□ -1.84
USE1YGL098W MET7Q08645 548 aa3.54□□□□□ -1.84
USE1YGL098W YOR223WQ12015 292 aa3.54□□□□□ -1.84
USE1YGL098W VTH1P40438 1549 aa3.54□□□□□ -1.84
USE1YGL098W VTH2P40890 1549 aa3.54□□□□□ -1.84
USE1YGL098W PDR12Q02785 1511 aa3.54□□□□□ -1.84
USE1YGL098W ARG1P22768 420 aa3.53□□□□□ -1.84
USE1YGL098W KCC4P25389 1037 aa3.53□□□□□ -1.84
USE1YGL098W CPS1P27614 576 aa3.53□□□□□ -1.84
USE1YGL098W SLA1P32790 1244 aa3.53□□□□□ -1.84
USE1YGL098W CNS1P33313 385 aa3.53□□□□□ -1.84
USE1YGL098W LOS1P33418 1100 aaPredicted RBP3.53□□□□□ -1.84
USE1YGL098W MRP8P35719 219 aa3.53□□□□□ -1.84
USE1YGL098W SSZ1P38788 538 aaKnown RBP3.53□□□□□ -1.84
USE1YGL098W TDA11P38854 504 aa3.53□□□□□ -1.84
USE1YGL098W KAP123P40069 1113 aaKnown RBP3.53□□□□□ -1.84
USE1YGL098W SYG1P40528 902 aa3.53□□□□□ -1.84
USE1YGL098W VTC4P47075 721 aa3.53□□□□□ -1.84
USE1YGL098W ENP2P48234 707 aaKnown RBP3.53□□□□□ -1.84
USE1YGL098W ORM1P53224 222 aa3.53□□□□□ -1.84
USE1YGL098W CAF130P53280 1122 aaPredicted RBP3.53□□□□□ -1.84
USE1YGL098W LSC1P53598 329 aaKnown RBP3.53□□□□□ -1.84
USE1YGL098W VPS75P53853 264 aa3.53□□□□□ -1.84
USE1YGL098W YNL144CP53907 740 aa3.53□□□□□ -1.84
USE1YGL098W NOP15P53927 220 aaPredicted RBP3.53□□□□□ -1.84
USE1YGL098W UFD2P54860 961 aa3.53□□□□□ -1.84
USE1YGL098W GTR1Q00582 310 aa3.53□□□□□ -1.84
USE1YGL098W RAT1Q02792 1006 aaKnown RBP3.53□□□□□ -1.84
USE1YGL098W WAR1Q03631 944 aa3.53□□□□□ -1.84
USE1YGL098W PLP1Q04004 230 aa3.53□□□□□ -1.84
USE1YGL098W SPC24Q04477 213 aa3.53□□□□□ -1.84
USE1YGL098W YDR341CQ05506 607 aaKnown RBP3.53□□□□□ -1.84
USE1YGL098W SGT2Q12118 346 aaKnown RBP3.53□□□□□ -1.84
USE1YGL098W CDC25P04821 1589 aa3.53□□□□□ -1.84
USE1YGL098W CDC8P00572 216 aa3.52□□□□□ -1.85
USE1YGL098W RPB2P08518 1224 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W GPA1P08539 472 aa3.52□□□□□ -1.85
USE1YGL098W CDC16P09798 840 aa3.52□□□□□ -1.85
USE1YGL098W TEC1P18412 486 aa3.52□□□□□ -1.85
USE1YGL098W CDC15P27636 974 aa3.52□□□□□ -1.85
USE1YGL098W SEC20P28791 383 aa3.52□□□□□ -1.85
USE1YGL098W FBP26P32604 452 aa3.52□□□□□ -1.85
USE1YGL098W RPC34P32910 317 aa3.52□□□□□ -1.85
USE1YGL098W CSE1P33307 960 aa3.52□□□□□ -1.85
USE1YGL098W PET112P33893 541 aa3.52□□□□□ -1.85
USE1YGL098W NUP120P35729 1037 aa3.52□□□□□ -1.85
USE1YGL098W PCH2P38126 564 aa3.52□□□□□ -1.85
USE1YGL098W FES1P38260 290 aa3.52□□□□□ -1.85
USE1YGL098W OSH3P38713 996 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W SPC72P39723 622 aa3.52□□□□□ -1.85
USE1YGL098W NOC2P39744 710 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W YER130CP39959 443 aa3.52□□□□□ -1.85
USE1YGL098W BUD16P39988 312 aa3.52□□□□□ -1.85
USE1YGL098W AIM9P40053 627 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W AIM21P40563 679 aa3.52□□□□□ -1.85
USE1YGL098W MAD1P40957 749 aa3.52□□□□□ -1.85
USE1YGL098W MDJ2P42834 146 aa3.52□□□□□ -1.85
USE1YGL098W MIC19P43594 170 aa3.52□□□□□ -1.85
USE1YGL098W AVT1P47082 602 aa3.52□□□□□ -1.85
USE1YGL098W SGM1P47166 707 aa3.52□□□□□ -1.85
USE1YGL098W YPT11P48559 417 aa3.52□□□□□ -1.85
USE1YGL098W RBL2P48606 106 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W MSN5P52918 1224 aa3.52□□□□□ -1.85
USE1YGL098W ARI1P53111 347 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W HOP2P53187 214 aa3.52□□□□□ -1.85
USE1YGL098W SDA1P53313 767 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W SPO1P53541 631 aa3.52□□□□□ -1.85
USE1YGL098W COG6P53959 839 aa3.52□□□□□ -1.85
USE1YGL098W UBP3Q01477 912 aaKnown RBP RIP-Chip data3.52□□□□□ -1.85not detected
USE1YGL098W FMP30Q02883 468 aa3.52□□□□□ -1.85
USE1YGL098W TFB2Q02939 513 aa3.52□□□□□ -1.85
USE1YGL098W MGR3Q04472 501 aa3.52□□□□□ -1.85
USE1YGL098W VPS38Q05919 439 aa3.52□□□□□ -1.85
USE1YGL098W ATG17Q06410 417 aa3.52□□□□□ -1.85
USE1YGL098W SPP382Q06411 708 aaPredicted RBP3.52□□□□□ -1.85
USE1YGL098W TSR2Q06672 205 aaKnown RBP3.52□□□□□ -1.85
USE1YGL098W VAM6Q07468 1049 aa3.52□□□□□ -1.85
USE1YGL098W PSK2Q08217 1101 aa3.52□□□□□ -1.85
USE1YGL098W BUD7Q08754 746 aa3.52□□□□□ -1.85
USE1YGL098W CIR2Q08822 631 aa3.52□□□□□ -1.85
USE1YGL098W APL4Q12028 832 aa3.52□□□□□ -1.85
USE1YGL098W NUR1Q12066 484 aa3.52□□□□□ -1.85
USE1YGL098W MSH5Q12175 901 aa3.52□□□□□ -1.85
USE1YGL098W TY1A-DR3Q12441 440 aa3.52□□□□□ -1.85
USE1YGL098W OCA6Q12454 224 aa3.52□□□□□ -1.85
USE1YGL098W ADE3P07245 946 aaKnown RBP3.51□□□□□ -1.85
USE1YGL098W PET122P10355 254 aa3.51□□□□□ -1.85
USE1YGL098W DIT1P21623 536 aa3.51□□□□□ -1.85
USE1YGL098W DAL7P21826 554 aa3.51□□□□□ -1.85
USE1YGL098W RRP43P25359 394 aaPredicted RBP3.51□□□□□ -1.85
USE1YGL098W GSY2P27472 705 aa3.51□□□□□ -1.85
USE1YGL098W YJU2P28320 278 aaPredicted RBP3.51□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms