RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W MSB1P21339 1137 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W RET1P22276 1149 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W SHM1P37292 490 aaPredicted RBP1.51□□□□□ -2.17
CDC39YCR093W PIK1P39104 1066 aa1.51□□□□□ -2.17
CDC39YCR093W RSC3Q06639 885 aa1.51□□□□□ -2.17
CDC39YCR093W PDR15Q04182 1529 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W TRP2P00899 507 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W PHO81P17442 1178 aa1.51□□□□□ -2.17
CDC39YCR093W BAS1P22035 811 aa1.51□□□□□ -2.17
CDC39YCR093W MCM2P29469 868 aa1.51□□□□□ -2.17
CDC39YCR093W NMD3P38861 518 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W ALD3P54114 506 aa1.51□□□□□ -2.17
CDC39YCR093W PUS7Q08647 676 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W GLO4Q12320 285 aa1.51□□□□□ -2.17
CDC39YCR093W CIT1P00890 479 aa1.51□□□□□ -2.17
CDC39YCR093W RAD53P22216 821 aa1.51□□□□□ -2.17
CDC39YCR093W RDH54P38086 958 aa1.51□□□□□ -2.17
CDC39YCR093W RIM4P38741 713 aa1.51□□□□□ -2.17
CDC39YCR093W PAN5P38787 379 aa1.51□□□□□ -2.17
CDC39YCR093W NAB3P38996 802 aaKnown RBP RIP-Chip data1.51□□□□□ -2.17not detected
CDC39YCR093W TRE2Q08693 809 aa1.51□□□□□ -2.17
CDC39YCR093W CMR1Q12510 522 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W CCP1P00431 361 aa1.51□□□□□ -2.17
CDC39YCR093W SAP190P36123 1033 aa1.51□□□□□ -2.17
CDC39YCR093W YGL176CP46945 554 aa1.51□□□□□ -2.17
CDC39YCR093W JJJ3P47138 172 aa1.51□□□□□ -2.17
CDC39YCR093W ARI1P53111 347 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W GCR1P07261 785 aa1.51□□□□□ -2.17
CDC39YCR093W IDI1P15496 288 aa1.51□□□□□ -2.17
CDC39YCR093W YBR184WP38299 523 aa1.51□□□□□ -2.17
CDC39YCR093W CRP1P38845 465 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W VPS27P40343 622 aaKnown RBP1.51□□□□□ -2.17
CDC39YCR093W LSB6P42951 607 aa1.51□□□□□ -2.17
CDC39YCR093W HFD1Q04458 532 aa1.51□□□□□ -2.17
CDC39YCR093W TRE1Q08919 783 aa1.51□□□□□ -2.17
CDC39YCR093W NYV1Q12255 253 aa1.51□□□□□ -2.17
CDC39YCR093W HSF1P10961 833 aa1.5□□□□□ -2.17
CDC39YCR093W PDC5P16467 563 aaKnown RBP1.5□□□□□ -2.17
CDC39YCR093W TSR4P25040 408 aa1.5□□□□□ -2.17
CDC39YCR093W PRO1P32264 428 aa1.5□□□□□ -2.17
CDC39YCR093W LIP5P32875 414 aa1.5□□□□□ -2.17
CDC39YCR093W PEX6P33760 1030 aa1.5□□□□□ -2.17
CDC39YCR093W PTH2P34222 208 aa1.5□□□□□ -2.17
CDC39YCR093W MAL31P38156 614 aa1.5□□□□□ -2.17
CDC39YCR093W SAF1P38352 637 aa1.5□□□□□ -2.17
CDC39YCR093W EMP65P40085 556 aa1.5□□□□□ -2.17
CDC39YCR093W TED1P40533 473 aa1.5□□□□□ -2.17
CDC39YCR093W DAS1P47005 663 aa1.5□□□□□ -2.17
CDC39YCR093W SDA1P53313 767 aaKnown RBP1.5□□□□□ -2.17
CDC39YCR093W NOG2P53742 486 aaKnown RBP1.5□□□□□ -2.17
CDC39YCR093W PTA1Q01329 785 aaPredicted RBP1.5□□□□□ -2.17
CDC39YCR093W GPI13Q07830 1017 aa1.5□□□□□ -2.17
CDC39YCR093W NOP14Q99207 810 aaKnown RBP1.5□□□□□ -2.17
CDC39YCR093W BUD4P47136 1447 aa1.5□□□□□ -2.17
CDC39YCR093W PRP5P21372 849 aaPredicted RBP1.5□□□□□ -2.17
CDC39YCR093W SRM1P21827 482 aa1.5□□□□□ -2.17
CDC39YCR093W AEP2P22136 580 aa1.5□□□□□ -2.17
CDC39YCR093W GRX7P38068 203 aa1.5□□□□□ -2.17
CDC39YCR093W PRK1P40494 810 aa1.5□□□□□ -2.17
CDC39YCR093W ALG2P43636 503 aa1.5□□□□□ -2.17
CDC39YCR093W SSF2Q12153 453 aaPredicted RBP1.5□□□□□ -2.17
CDC39YCR093W PHR1P05066 565 aaKnown RBP RIP-Chip data1.5□□□□□ -2.17not detected
CDC39YCR093W FUN30P31380 1131 aa1.5□□□□□ -2.17
CDC39YCR093W NTH1P32356 751 aa1.5□□□□□ -2.17
CDC39YCR093W SLA1P32790 1244 aa1.5□□□□□ -2.17
CDC39YCR093W TYE7P33122 291 aaPredicted RBP1.5□□□□□ -2.17
CDC39YCR093W TOM20P35180 183 aa1.5□□□□□ -2.17
CDC39YCR093W ALG3P38179 458 aa1.5□□□□□ -2.17
CDC39YCR093W MCX1P38323 520 aaPredicted RBP1.5□□□□□ -2.17
CDC39YCR093W YGR045CP53229 120 aa1.5□□□□□ -2.17
CDC39YCR093W HOL1P53389 586 aa1.5□□□□□ -2.17
CDC39YCR093W YNL165WP53891 406 aa1.5□□□□□ -2.17
CDC39YCR093W AAT1Q01802 451 aa1.5□□□□□ -2.17
CDC39YCR093W ROD1Q02805 837 aa1.5□□□□□ -2.17
CDC39YCR093W DIA2Q08496 732 aaPredicted RBP1.5□□□□□ -2.17
CDC39YCR093W RKR1Q04781 1562 aa1.5□□□□□ -2.17
CDC39YCR093W ENA1P13587 1091 aa1.5□□□□□ -2.17
CDC39YCR093W RER2P35196 286 aa1.5□□□□□ -2.17
CDC39YCR093W ICP55P40051 511 aa1.5□□□□□ -2.17
CDC39YCR093W HSV2P50079 448 aaPredicted RBP1.5□□□□□ -2.17
CDC39YCR093W ENA2Q01896 1091 aa1.5□□□□□ -2.17
CDC39YCR093W BDF2Q07442 638 aa1.5□□□□□ -2.17
CDC39YCR093W FLC1Q08967 793 aa1.5□□□□□ -2.17
CDC39YCR093W ALG6Q12001 544 aaKnown RBP1.5□□□□□ -2.17
CDC39YCR093W ENA5Q12691 1091 aa1.5□□□□□ -2.17
CDC39YCR093W SDH2P21801 266 aa1.5□□□□□ -2.17
CDC39YCR093W APL1P27351 700 aa1.5□□□□□ -2.17
CDC39YCR093W HSL7P38274 827 aa1.5□□□□□ -2.17
CDC39YCR093W NAB6Q03735 1134 aaKnown RBP RIP-Chip data1.5□□□□□ -2.17not detected
CDC39YCR093W ATG13Q06628 738 aa1.5□□□□□ -2.17
CDC39YCR093W SIN3P22579 1536 aa1.49□□□□□ -2.17
CDC39YCR093W YLR358CO13565 187 aa1.49□□□□□ -2.17
CDC39YCR093W GPT2P36148 743 aa1.49□□□□□ -2.17
CDC39YCR093W OCA5P38738 679 aa1.49□□□□□ -2.17
CDC39YCR093W SSP120P39931 234 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W THI6P41835 540 aa1.49□□□□□ -2.17
CDC39YCR093W CLA4P48562 842 aa1.49□□□□□ -2.17
CDC39YCR093W KIP3P53086 805 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W CEF1Q03654 590 aaPredicted RBP1.49□□□□□ -2.17
CDC39YCR093W SPR28Q04921 423 aa1.49□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms