RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 LRP8Q14114 963 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 EFHC2Q5JST6 749 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 LCE1DQ5T752 114 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 PGBD3Q8N328 593 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 TRIM52Q96A61 297 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 ZCCHC2Q9C0B9 1178 aaKnown RBP4.61□□□□□ -1.67
VIM-210ENST00000637053 CRISPLD1Q9H336 500 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 FAM229AH3BQW9 127 aa4.6□□□□□ -1.67
VIM-210ENST00000637053 GNRH1P01148 92 aa4.6□□□□□ -1.67
VIM-210ENST00000637053 BRD2P25440 801 aaKnown RBP4.6□□□□□ -1.67
VIM-210ENST00000637053 ADH6P28332 368 aa4.6□□□□□ -1.67
VIM-210ENST00000637053 XAGE2Q96GT9 111 aa4.6□□□□□ -1.67
VIM-210ENST00000637053 PUS7Q96PZ0 661 aaKnown RBP4.6□□□□□ -1.67
VIM-210ENST00000637053 PCDHB11Q9Y5F2 797 aa4.6□□□□□ -1.67
VIM-210ENST00000637053 ZBBXA8MT70 800 aa4.59□□□□□ -1.67
VIM-210ENST00000637053 CD33P20138 364 aa4.59□□□□□ -1.67
VIM-210ENST00000637053 PCBP4P57723 403 aaKnown RBP4.59□□□□□ -1.67
VIM-210ENST00000637053 COL9A3Q14050 684 aaPredicted RBP4.59□□□□□ -1.67
VIM-210ENST00000637053 SKIV2LQ15477 1246 aaKnown RBP4.59□□□□□ -1.67
VIM-210ENST00000637053 CCDC125Q86Z20 511 aa4.59□□□□□ -1.67
VIM-210ENST00000637053 PNMA1Q8ND90 353 aa4.59□□□□□ -1.67
VIM-210ENST00000637053 ARID1BQ8NFD5 2236 aaPredicted RBP4.59□□□□□ -1.67
VIM-210ENST00000637053 PCDHGC4Q9Y5F7 938 aa4.59□□□□□ -1.67
VIM-210ENST00000637053 STAU1O95793 577 aaKnown RBP4.58□□□□□ -1.68
VIM-210ENST00000637053 MAPTP10636 758 aaKnown RBP4.58□□□□□ -1.68
VIM-210ENST00000637053 TNP2Q05952 138 aa4.58□□□□□ -1.68
VIM-210ENST00000637053 GNASQ5JWF2 1037 aa4.58□□□□□ -1.68
VIM-210ENST00000637053 TMEM214Q6NUQ4 689 aaKnown RBP4.58□□□□□ -1.68
VIM-210ENST00000637053 MDFIQ99750 246 aa4.58□□□□□ -1.68
VIM-210ENST00000637053 DCDC2BA2VCK2 349 aa4.57□□□□□ -1.68
VIM-210ENST00000637053 ATP4AP20648 1035 aa4.57□□□□□ -1.68
VIM-210ENST00000637053 PDE4CQ08493 712 aa4.57□□□□□ -1.68
VIM-210ENST00000637053 FAM182BQ5T319 152 aa4.57□□□□□ -1.68
VIM-210ENST00000637053 RNF20Q5VTR2 975 aa4.57□□□□□ -1.68
VIM-210ENST00000637053 DHX37Q8IY37 1157 aaKnown RBP4.57□□□□□ -1.68
VIM-210ENST00000637053 CDCA7Q9BWT1 371 aaPredicted RBP4.57□□□□□ -1.68
VIM-210ENST00000637053 ATXN7O15265 892 aaPredicted RBP4.56□□□□□ -1.68
VIM-210ENST00000637053 APBA3O96018 575 aa4.56□□□□□ -1.68
VIM-210ENST00000637053 BRPF1P55201 1214 aaPredicted RBP4.56□□□□□ -1.68
VIM-210ENST00000637053 GRIK4Q16099 956 aa4.56□□□□□ -1.68
VIM-210ENST00000637053 SH3D19Q5HYK7 790 aa4.56□□□□□ -1.68
VIM-210ENST00000637053 FIGNL1Q6PIW4 674 aa4.56□□□□□ -1.68
VIM-210ENST00000637053 PPARGC1BQ86YN6 1023 aaKnown RBP4.56□□□□□ -1.68
VIM-210ENST00000637053 ARID3AQ99856 593 aa4.56□□□□□ -1.68
VIM-210ENST00000637053 AVENQ9NQS1 362 aaPredicted RBP4.56□□□□□ -1.68
VIM-210ENST00000637053 H2AFB1P0C5Y9 115 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 H2AFB2P0C5Z0 115 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 PRRT3Q5FWE3 981 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 TAF7LQ5H9L4 462 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 ZNF468Q5VIY5 522 aaPredicted RBP4.55□□□□□ -1.68
VIM-210ENST00000637053 MCTP1Q6DN14 999 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 NLRP8Q86W28 1048 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 RHBDD1Q8TEB9 315 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 STRN4Q9NRL3 753 aa4.55□□□□□ -1.68
VIM-210ENST00000637053 PLA2G4AP47712 749 aa4.54□□□□□ -1.68
VIM-210ENST00000637053 C8orf86Q6ZUL3 223 aa4.54□□□□□ -1.68
VIM-210ENST00000637053 CCDC85AQ96PX6 553 aaPredicted RBP4.54□□□□□ -1.68
VIM-210ENST00000637053 ZMYND15Q9H091 742 aa4.54□□□□□ -1.68
VIM-210ENST00000637053 STARD13Q9Y3M8 1113 aa4.54□□□□□ -1.68
VIM-210ENST00000637053 ELOA3CA0A087WX78 387 aaPredicted RBP4.53□□□□□ -1.68
VIM-210ENST00000637053 ELOA3DA6NLF2 546 aaPredicted RBP4.53□□□□□ -1.68
VIM-210ENST00000637053 KHNYNO15037 678 aaKnown RBP4.53□□□□□ -1.68
VIM-210ENST00000637053 ELOA3BQ3SY89 546 aa4.53□□□□□ -1.68
VIM-210ENST00000637053 TBC1D9Q6ZT07 1266 aa4.53□□□□□ -1.68
VIM-210ENST00000637053 ELOA3Q8NG57 546 aa4.53□□□□□ -1.68
VIM-210ENST00000637053 GJD4Q96KN9 370 aaPredicted RBP4.53□□□□□ -1.68
VIM-210ENST00000637053 ESF1Q9H501 851 aaKnown RBP4.53□□□□□ -1.68
VIM-210ENST00000637053 ETNK1Q9HBU6 452 aa4.53□□□□□ -1.68
VIM-210ENST00000637053 SLC24A3Q9HC58 644 aa4.53□□□□□ -1.68
VIM-210ENST00000637053 A0A1W2PNR3 127 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 SPDYE3A6NKU9 549 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 M0R082 166 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 SELPP16109 830 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 GTF2E1P29083 439 aaPredicted RBP4.52□□□□□ -1.69
VIM-210ENST00000637053 RFC5P40937 340 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 ADGRE1Q14246 886 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 MBTPS1Q14703 1052 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 TSGA10IPQ3SY00 556 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 ZNF417Q8TAU3 575 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 ZNF587Q96SQ5 575 aaPredicted RBP4.52□□□□□ -1.69
VIM-210ENST00000637053 PRR12Q9ULL5 1215 aa4.52□□□□□ -1.69
VIM-210ENST00000637053 GPR37L1O60883 481 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 COBLO75128 1261 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 ALBP02768 609 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 NEFLP07196 543 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 NID1P14543 1247 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 TRIM28Q13263 835 aaKnown RBP4.51□□□□□ -1.69
VIM-210ENST00000637053 TLR1Q15399 786 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 SYT9Q86SS6 491 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 ZNF295-AS1Q8N0V1 137 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 KRTAP4-9Q9BYQ8 210 aa4.51□□□□□ -1.69
VIM-210ENST00000637053 ATP1B4Q9UN42 357 aaPredicted RBP4.51□□□□□ -1.69
VIM-210ENST00000637053 COL17A1Q9UMD9 1497 aaPredicted RBP4.5□□□□□ -1.69
VIM-210ENST00000637053 EFSO43281 561 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 FAM157BP0CG42 384 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 MCCD1P59942 119 aaPredicted RBP4.5□□□□□ -1.69
VIM-210ENST00000637053 NR1H3Q13133 447 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 ESCO1Q5FWF5 840 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 FAM9AQ8IZU1 332 aaPredicted RBP4.5□□□□□ -1.69
VIM-210ENST00000637053 MICALL1Q8N3F8 863 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms