RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 SOS1Q07889 1333 aaPredicted RBP18.15■□□□□ 0.5
CLN3-253ENST00000636977 PI4KAP2A4QPH2 592 aa18.14■□□□□ 0.49
CLN3-253ENST00000636977 FOXD4L6Q3SYB3 417 aaPredicted RBP18.14■□□□□ 0.49
CLN3-253ENST00000636977 FOXD4L3Q6VB84 417 aaPredicted RBP18.14■□□□□ 0.49
CLN3-253ENST00000636977 ANKARQ7Z5J8 1434 aa18.14■□□□□ 0.49
CLN3-253ENST00000636977 PI4KAP1Q8N8J0 262 aa18.14■□□□□ 0.49
CLN3-253ENST00000636977 SRCIN1Q9C0H9 1055 aa18.14■□□□□ 0.49
CLN3-253ENST00000636977 SRGAP3O43295 1099 aa18.14■□□□□ 0.49
CLN3-253ENST00000636977 MPRIPQ6WCQ1 1025 aa18.14■□□□□ 0.49
CLN3-253ENST00000636977 XPCQ01831 940 aaPredicted RBP18.13■□□□□ 0.49
CLN3-253ENST00000636977 TRIM44Q96DX7 344 aaPredicted RBP18.13■□□□□ 0.49
CLN3-253ENST00000636977 IP6K1Q92551 441 aa18.13■□□□□ 0.49
CLN3-253ENST00000636977 CEMIPQ8WUJ3 1361 aa18.13■□□□□ 0.49
CLN3-253ENST00000636977 PRIM1P49642 420 aaKnown RBP18.12■□□□□ 0.49
CLN3-253ENST00000636977 RHPN1Q8TCX5 695 aa18.12■□□□□ 0.49
CLN3-253ENST00000636977 RBSNQ9H1K0 784 aa18.12■□□□□ 0.49
CLN3-253ENST00000636977 POLA2Q14181 598 aa18.12■□□□□ 0.49
CLN3-253ENST00000636977 PI4K2BQ8TCG2 481 aa18.12■□□□□ 0.49
CLN3-253ENST00000636977 LARP6Q9BRS8 491 aaKnown RBP18.12■□□□□ 0.49
CLN3-253ENST00000636977 ZNF445P59923 1031 aa18.12■□□□□ 0.49
CLN3-253ENST00000636977 TMEM63CQ9P1W3 806 aa18.12■□□□□ 0.49
CLN3-253ENST00000636977 DTNBO60941 627 aa18.11■□□□□ 0.49
CLN3-253ENST00000636977 BEND3Q5T5X7 828 aa18.11■□□□□ 0.49
CLN3-253ENST00000636977 LTN1O94822 1766 aa18.11■□□□□ 0.49
CLN3-253ENST00000636977 PRAMEF22A3QJZ6 481 aa18.11■□□□□ 0.49
CLN3-253ENST00000636977 ESCO1Q5FWF5 840 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 FER1L4A9Z1Z3 1794 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 MCCP23508 829 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 CUL4AQ13619 759 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 DNAAF4Q8WXU2 420 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 BABAM1Q9NWV8 329 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 CACNA1FO60840 1977 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 RGPD2P0DJD1 1756 aa18.1■□□□□ 0.49
CLN3-253ENST00000636977 PROSER3Q2NL68 480 aa18.09■□□□□ 0.49
CLN3-253ENST00000636977 ZNF530Q6P9A1 599 aaPredicted RBP18.09■□□□□ 0.49
CLN3-253ENST00000636977 PXDNLA1KZ92 1463 aa18.09■□□□□ 0.49
CLN3-253ENST00000636977 BRD1O95696 1058 aa18.09■□□□□ 0.49
CLN3-253ENST00000636977 PSME1Q06323 249 aa18.09■□□□□ 0.49
CLN3-253ENST00000636977 BTBD11A6QL63 1104 aa18.08■□□□□ 0.49
CLN3-253ENST00000636977 PPP1R9BQ96SB3 815 aa18.08■□□□□ 0.49
CLN3-253ENST00000636977 GDPD2Q9HCC8 539 aa18.08■□□□□ 0.49
CLN3-253ENST00000636977 ADCY9O60503 1353 aa18.08■□□□□ 0.48
CLN3-253ENST00000636977 SYCE3A1L190 88 aa18.08■□□□□ 0.48
CLN3-253ENST00000636977 ANAPC15P60006 121 aa18.07■□□□□ 0.48
CLN3-253ENST00000636977 HSPA4P34932 840 aa18.07■□□□□ 0.48
CLN3-253ENST00000636977 CCDC173Q0VFZ6 552 aa18.07■□□□□ 0.48
CLN3-253ENST00000636977 TEFQ10587 303 aa18.07■□□□□ 0.48
CLN3-253ENST00000636977 RASEFQ8IZ41 740 aa18.07■□□□□ 0.48
CLN3-253ENST00000636977 SPG7Q9UQ90 795 aa18.07■□□□□ 0.48
CLN3-253ENST00000636977 N4BP2Q86UW6 1770 aaPredicted RBP18.06■□□□□ 0.48
CLN3-253ENST00000636977 CPA1P15085 419 aa18.06■□□□□ 0.48
CLN3-253ENST00000636977 NFAT5O94916 1531 aa18.06■□□□□ 0.48
CLN3-253ENST00000636977 RAB11FIP3O75154 756 aa18.06■□□□□ 0.48
CLN3-253ENST00000636977 CWC27Q6UX04 472 aaKnown RBP18.06■□□□□ 0.48
CLN3-253ENST00000636977 PA2G4Q9UQ80 394 aaKnown RBP18.06■□□□□ 0.48
CLN3-253ENST00000636977 MCM2P49736 904 aa18.05■□□□□ 0.48
CLN3-253ENST00000636977 CWF19L2Q2TBE0 894 aaKnown RBP18.05■□□□□ 0.48
CLN3-253ENST00000636977 KIF1BPQ96EK5 621 aa18.05■□□□□ 0.48
CLN3-253ENST00000636977 ORAI2Q96SN7 254 aa18.05■□□□□ 0.48
CLN3-253ENST00000636977 AOX1Q06278 1338 aa18.05■□□□□ 0.48
CLN3-253ENST00000636977 PXDNQ92626 1479 aa18.05■□□□□ 0.48
CLN3-253ENST00000636977 SGSM2O43147 1006 aa18.05■□□□□ 0.48
CLN3-253ENST00000636977 LMOD2Q6P5Q4 547 aa18.05■□□□□ 0.48
CLN3-253ENST00000636977 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.05■□□□□ 0.48
CLN3-253ENST00000636977 TPRNQ4KMQ1 711 aa18.04■□□□□ 0.48
CLN3-253ENST00000636977 MAP3K2Q9Y2U5 619 aa18.04■□□□□ 0.48
CLN3-253ENST00000636977 SNX14Q9Y5W7 946 aa18.04■□□□□ 0.48
CLN3-253ENST00000636977 USP54Q70EL1 1684 aa18.04■□□□□ 0.48
CLN3-253ENST00000636977 LSG1Q9H089 658 aaKnown RBP18.04■□□□□ 0.48
CLN3-253ENST00000636977 MED1Q15648 1581 aaPredicted RBP18.04■□□□□ 0.48
CLN3-253ENST00000636977 GADD45BO75293 160 aaPredicted RBP18.03■□□□□ 0.48
CLN3-253ENST00000636977 OS9Q13438 667 aaPredicted RBP18.03■□□□□ 0.48
CLN3-253ENST00000636977 AKAP4Q5JQC9 854 aa18.03■□□□□ 0.48
CLN3-253ENST00000636977 INTS4Q96HW7 963 aaKnown RBP18.03■□□□□ 0.48
CLN3-253ENST00000636977 RAD50Q92878 1312 aa18.02■□□□□ 0.48
CLN3-253ENST00000636977 RNMTO43148 476 aaKnown RBP18.02■□□□□ 0.48
CLN3-253ENST00000636977 RNF214Q8ND24 703 aa18.02■□□□□ 0.48
CLN3-253ENST00000636977 IL17RAQ96F46 866 aa18.02■□□□□ 0.48
CLN3-253ENST00000636977 DDX54Q8TDD1 881 aaKnown RBP18.02■□□□□ 0.47
CLN3-253ENST00000636977 AXIN2Q9Y2T1 843 aa18.02■□□□□ 0.47
CLN3-253ENST00000636977 KDM3BQ7LBC6 1761 aa18.02■□□□□ 0.47
CLN3-253ENST00000636977 GCP02774 474 aa18.01■□□□□ 0.47
CLN3-253ENST00000636977 ANP32BQ92688 251 aaKnown RBP18.01■□□□□ 0.47
CLN3-253ENST00000636977 GIGYF1O75420 1035 aaPredicted RBP18■□□□□ 0.47
CLN3-253ENST00000636977 AK2P54819 239 aa18■□□□□ 0.47
CLN3-253ENST00000636977 FGD1P98174 961 aa18■□□□□ 0.47
CLN3-253ENST00000636977 PTH1RQ03431 593 aa18■□□□□ 0.47
CLN3-253ENST00000636977 PLEKHO1Q53GL0 409 aaPredicted RBP18■□□□□ 0.47
CLN3-253ENST00000636977 LRSAM1Q6UWE0 723 aa18■□□□□ 0.47
CLN3-253ENST00000636977 CNTROBQ8N137 903 aa18■□□□□ 0.47
CLN3-253ENST00000636977 RUFY3Q7L099 469 aa18■□□□□ 0.47
CLN3-253ENST00000636977 C9orf78Q9NZ63 289 aaPredicted RBP18■□□□□ 0.47
CLN3-253ENST00000636977 LARGE1O95461 756 aa18■□□□□ 0.47
CLN3-253ENST00000636977 HOXB7P09629 217 aa18■□□□□ 0.47
CLN3-253ENST00000636977 PDE4CQ08493 712 aa18■□□□□ 0.47
CLN3-253ENST00000636977 AIMP1Q12904 312 aaKnown RBP18■□□□□ 0.47
CLN3-253ENST00000636977 TTC14Q96N46 770 aa18■□□□□ 0.47
CLN3-253ENST00000636977 DBF4Q9UBU7 674 aaPredicted RBP18■□□□□ 0.47
CLN3-253ENST00000636977 ARID3AQ99856 593 aa17.99■□□□□ 0.47
CLN3-253ENST00000636977 RPAP1Q9BWH6 1393 aaPredicted RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms