RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 SLKQ9H2G2 1235 aaPredicted RBP26.35■■□□□ 1.81
LIME1-210ENST00000621325 PRDM11Q9NQV5 511 aa26.34■■□□□ 1.81
LIME1-210ENST00000621325 NFKBIBQ15653 356 aa26.34■■□□□ 1.81
LIME1-210ENST00000621325 SCN11AQ9UI33 1791 aa26.33■■□□□ 1.81
LIME1-210ENST00000621325 ABCC6O95255 1503 aa26.33■■□□□ 1.81
LIME1-210ENST00000621325 SDSP20132 328 aa26.33■■□□□ 1.81
LIME1-210ENST00000621325 MAP3K2Q9Y2U5 619 aa26.32■■□□□ 1.8
LIME1-210ENST00000621325 LRRCC1Q9C099 1032 aa26.31■■□□□ 1.8
LIME1-210ENST00000621325 IBTKQ9P2D0 1353 aaPredicted RBP26.31■■□□□ 1.8
LIME1-210ENST00000621325 TSHZ3Q63HK5 1081 aa26.31■■□□□ 1.8
LIME1-210ENST00000621325 PDE1AP54750 535 aa26.3■■□□□ 1.8
LIME1-210ENST00000621325 PPP1R42Q7Z4L9 355 aa26.3■■□□□ 1.8
LIME1-210ENST00000621325 PDIA6Q15084 440 aa26.3■■□□□ 1.8
LIME1-210ENST00000621325 SSH3Q8TE77 659 aa26.3■■□□□ 1.8
LIME1-210ENST00000621325 SPRYD3Q8NCJ5 442 aa26.29■■□□□ 1.8
LIME1-210ENST00000621325 KIF2CQ99661 725 aa26.29■■□□□ 1.8
LIME1-210ENST00000621325 ZNF496Q96IT1 587 aaPredicted RBP26.29■■□□□ 1.8
LIME1-210ENST00000621325 DCAF5Q96JK2 942 aa26.29■■□□□ 1.8
LIME1-210ENST00000621325 KSR2Q6VAB6 950 aa26.28■■□□□ 1.8
LIME1-210ENST00000621325 USP35Q9P2H5 1018 aa26.28■■□□□ 1.8
LIME1-210ENST00000621325 SALL3Q9BXA9 1300 aa26.28■■□□□ 1.8
LIME1-210ENST00000621325 ANTXR1Q9H6X2 564 aa26.28■■□□□ 1.8
LIME1-210ENST00000621325 AIMP1Q12904 312 aaKnown RBP26.27■■□□□ 1.8
LIME1-210ENST00000621325 OSBPL3Q9H4L5 887 aa26.27■■□□□ 1.8
LIME1-210ENST00000621325 DDX21Q9NR30 783 aaKnown RBP eCLIP26.27■■□□□ 1.8
LIME1-210ENST00000621325 HYPKQ9NX55 129 aa26.27■■□□□ 1.8
LIME1-210ENST00000621325 WDR17Q8IZU2 1322 aa26.27■■□□□ 1.8
LIME1-210ENST00000621325 TOM1L2Q6ZVM7 507 aa26.27■■□□□ 1.8
LIME1-210ENST00000621325 CWF19L2Q2TBE0 894 aaKnown RBP26.26■■□□□ 1.79
LIME1-210ENST00000621325 SRGAP3O43295 1099 aa26.26■■□□□ 1.79
LIME1-210ENST00000621325 POLA2Q14181 598 aa26.26■■□□□ 1.79
LIME1-210ENST00000621325 PKD1L3Q7Z443 1732 aa26.25■■□□□ 1.79
LIME1-210ENST00000621325 C5P01031 1676 aa26.25■■□□□ 1.79
LIME1-210ENST00000621325 IL1RAPL2Q9NP60 686 aa26.24■■□□□ 1.79
LIME1-210ENST00000621325 FRAT2O75474 233 aaPredicted RBP26.24■■□□□ 1.79
LIME1-210ENST00000621325 SURF6O75683 361 aaKnown RBP26.24■■□□□ 1.79
LIME1-210ENST00000621325 MYL6BP14649 208 aa26.24■■□□□ 1.79
LIME1-210ENST00000621325 COL5A2P05997 1499 aaPredicted RBP26.23■■□□□ 1.79
LIME1-210ENST00000621325 MRC1P22897 1456 aa26.23■■□□□ 1.79
LIME1-210ENST00000621325 MX1P20591 662 aa26.23■■□□□ 1.79
LIME1-210ENST00000621325 USP16Q9Y5T5 823 aa26.23■■□□□ 1.79
LIME1-210ENST00000621325 PIP4K2AP48426 406 aaPredicted RBP26.22■■□□□ 1.79
LIME1-210ENST00000621325 CABP4P57796 275 aa26.22■■□□□ 1.79
LIME1-210ENST00000621325 RBM42Q9BTD8 480 aaKnown RBP26.22■■□□□ 1.79
LIME1-210ENST00000621325 PLEKHG2Q9H7P9 1386 aa26.21■■□□□ 1.79
LIME1-210ENST00000621325 ALDH1L1O75891 902 aa26.21■■□□□ 1.79
LIME1-210ENST00000621325 TTC5Q8N0Z6 440 aa26.21■■□□□ 1.79
LIME1-210ENST00000621325 C9orf78Q9NZ63 289 aaPredicted RBP26.21■■□□□ 1.79
LIME1-210ENST00000621325 HSP90AB1P08238 724 aaKnown RBP26.2■■□□□ 1.79
LIME1-210ENST00000621325 HSCBQ8IWL3 235 aa26.2■■□□□ 1.79
LIME1-210ENST00000621325 STRN4Q9NRL3 753 aa26.2■■□□□ 1.78
LIME1-210ENST00000621325 BRPF3Q9ULD4 1205 aa26.2■■□□□ 1.78
LIME1-210ENST00000621325 PODXL2Q9NZ53 605 aa26.19■■□□□ 1.78
LIME1-210ENST00000621325 ZCRB1Q8TBF4 217 aaKnown RBP26.19■■□□□ 1.78
LIME1-210ENST00000621325 DDX58O95786 925 aaKnown RBP26.18■■□□□ 1.78
LIME1-210ENST00000621325 SNRPA1P09661 255 aaKnown RBP26.18■■□□□ 1.78
LIME1-210ENST00000621325 LARP1Q6PKG0 1096 aaKnown RBP26.18■■□□□ 1.78
LIME1-210ENST00000621325 XAGE3Q8WTP9 111 aa26.18■■□□□ 1.78
LIME1-210ENST00000621325 CD2BP2O95400 341 aaKnown RBP26.18■■□□□ 1.78
LIME1-210ENST00000621325 NUTM1Q86Y26 1132 aa26.18■■□□□ 1.78
LIME1-210ENST00000621325 LINS1Q8NG48 757 aa26.18■■□□□ 1.78
LIME1-210ENST00000621325 USP26Q9BXU7 913 aa26.18■■□□□ 1.78
LIME1-210ENST00000621325 ABCA3Q99758 1704 aa26.17■■□□□ 1.78
LIME1-210ENST00000621325 RHPN1Q8TCX5 695 aa26.17■■□□□ 1.78
LIME1-210ENST00000621325 SNX21Q969T3 373 aa26.17■■□□□ 1.78
LIME1-210ENST00000621325 COPS6Q7L5N1 327 aa26.17■■□□□ 1.78
LIME1-210ENST00000621325 RIC3Q7Z5B4 369 aa26.17■■□□□ 1.78
LIME1-210ENST00000621325 FMNL2Q96PY5 1086 aa26.17■■□□□ 1.78
LIME1-210ENST00000621325 RAB11FIP3O75154 756 aa26.16■■□□□ 1.78
LIME1-210ENST00000621325 CASC1Q6TDU7 716 aa26.16■■□□□ 1.78
LIME1-210ENST00000621325 STAP2Q9UGK3 403 aa26.16■■□□□ 1.78
LIME1-210ENST00000621325 IGKV5-2P06315 115 aa26.16■■□□□ 1.78
LIME1-210ENST00000621325 LRP10Q7Z4F1 713 aa26.16■■□□□ 1.78
LIME1-210ENST00000621325 PCDH11XQ9BZA7 1347 aa26.15■■□□□ 1.78
LIME1-210ENST00000621325 PCDH11YQ9BZA8 1340 aa26.15■■□□□ 1.78
LIME1-210ENST00000621325 GRM8O00222 908 aa26.14■■□□□ 1.78
LIME1-210ENST00000621325 MTX1Q13505 466 aa26.14■■□□□ 1.78
LIME1-210ENST00000621325 KAZALD1Q96I82 304 aa26.14■■□□□ 1.78
LIME1-210ENST00000621325 CARD10Q9BWT7 1032 aa26.14■■□□□ 1.78
LIME1-210ENST00000621325 IL2RBP14784 551 aa26.14■■□□□ 1.77
LIME1-210ENST00000621325 UNC5CLQ8IV45 518 aa26.13■■□□□ 1.77
LIME1-210ENST00000621325 DDX54Q8TDD1 881 aaKnown RBP26.13■■□□□ 1.77
LIME1-210ENST00000621325 SUCLG2Q96I99 432 aa26.13■■□□□ 1.77
LIME1-210ENST00000621325 PARP4Q9UKK3 1724 aaKnown RBP26.13■■□□□ 1.77
LIME1-210ENST00000621325 EVA1CP58658 441 aa26.13■■□□□ 1.77
LIME1-210ENST00000621325 NHSL1Q5SYE7 1610 aa26.12■■□□□ 1.77
LIME1-210ENST00000621325 KIF1BPQ96EK5 621 aa26.12■■□□□ 1.77
LIME1-210ENST00000621325 TUBGCP6Q96RT7 1819 aa26.12■■□□□ 1.77
LIME1-210ENST00000621325 TRIM6-TRIM34B2RNG4 842 aa26.12■■□□□ 1.77
LIME1-210ENST00000621325 RILPL2Q969X0 211 aa26.12■■□□□ 1.77
LIME1-210ENST00000621325 PA2G4Q9UQ80 394 aaKnown RBP26.12■■□□□ 1.77
LIME1-210ENST00000621325 UTYO14607 1347 aa26.11■■□□□ 1.77
LIME1-210ENST00000621325 ERC2O15083 957 aa26.1■■□□□ 1.77
LIME1-210ENST00000621325 MYD88Q99836 296 aa26.1■■□□□ 1.77
LIME1-210ENST00000621325 GLI3P10071 1580 aa26.1■■□□□ 1.77
LIME1-210ENST00000621325 NEURL1BA8MQ27 555 aa26.09■■□□□ 1.77
LIME1-210ENST00000621325 BICC1Q9H694 974 aaKnown RBP26.09■■□□□ 1.77
LIME1-210ENST00000621325 ANKRD13DQ6ZTN6 518 aa26.09■■□□□ 1.77
LIME1-210ENST00000621325 METTL22Q9BUU2 404 aaPredicted RBP26.09■■□□□ 1.77
LIME1-210ENST00000621325 OS9Q13438 667 aaPredicted RBP26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms