RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 DPEP1P16444 411 aa15.96■□□□□ 0.15
UPF3B-204ENST00000619445 TM4SF1P30408 202 aa15.95■□□□□ 0.14
UPF3B-204ENST00000619445 WWC3Q9ULE0 1092 aa15.95■□□□□ 0.14
UPF3B-204ENST00000619445 POLRMTO00411 1230 aaKnown RBP15.94■□□□□ 0.14
UPF3B-204ENST00000619445 DALRD3Q5D0E6 543 aaKnown RBP15.94■□□□□ 0.14
UPF3B-204ENST00000619445 USPL1Q5W0Q7 1092 aa15.94■□□□□ 0.14
UPF3B-204ENST00000619445 ZNF790Q6PG37 636 aa15.94■□□□□ 0.14
UPF3B-204ENST00000619445 NPM2Q86SE8 214 aaKnown RBP15.94■□□□□ 0.14
UPF3B-204ENST00000619445 SIPA1L3O60292 1781 aaPredicted RBP15.93■□□□□ 0.14
UPF3B-204ENST00000619445 DDR1Q08345 913 aa15.93■□□□□ 0.14
UPF3B-204ENST00000619445 CNGB1Q14028 1251 aaPredicted RBP15.93■□□□□ 0.14
UPF3B-204ENST00000619445 ARHGAP27Q6ZUM4 889 aa15.93■□□□□ 0.14
UPF3B-204ENST00000619445 ZBTB1Q9Y2K1 713 aa15.93■□□□□ 0.14
UPF3B-204ENST00000619445 CEMIPQ8WUJ3 1361 aa15.92■□□□□ 0.14
UPF3B-204ENST00000619445 HEG1Q9ULI3 1381 aa15.92■□□□□ 0.14
UPF3B-204ENST00000619445 IL17REQ8NFR9 667 aa15.92■□□□□ 0.14
UPF3B-204ENST00000619445 FMNL2Q96PY5 1086 aa15.92■□□□□ 0.14
UPF3B-204ENST00000619445 KCNA3P22001 575 aa15.91■□□□□ 0.14
UPF3B-204ENST00000619445 PRKAR2BP31323 418 aa15.91■□□□□ 0.14
UPF3B-204ENST00000619445 RTF1Q92541 710 aaKnown RBP15.91■□□□□ 0.14
UPF3B-204ENST00000619445 RSPH6AQ9H0K4 717 aa15.91■□□□□ 0.14
UPF3B-204ENST00000619445 PDZRN3Q9UPQ7 1066 aa15.91■□□□□ 0.14
UPF3B-204ENST00000619445 NEFMP07197 916 aa15.9■□□□□ 0.14
UPF3B-204ENST00000619445 U2AF1L5P0DN76 240 aaPredicted RBP15.9■□□□□ 0.14
UPF3B-204ENST00000619445 PPP2R1AP30153 589 aa15.9■□□□□ 0.14
UPF3B-204ENST00000619445 EIF5P55010 431 aaKnown RBP15.9■□□□□ 0.14
UPF3B-204ENST00000619445 U2AF1Q01081 240 aaKnown RBP eCLIP15.9■□□□□ 0.14
UPF3B-204ENST00000619445 NFIXQ14938 502 aa15.9■□□□□ 0.14
UPF3B-204ENST00000619445 ZNF526Q8TF50 670 aaPredicted RBP15.9■□□□□ 0.14
UPF3B-204ENST00000619445 ZNF496Q96IT1 587 aaPredicted RBP15.9■□□□□ 0.14
UPF3B-204ENST00000619445 NRXN2Q9P2S2 1712 aa15.9■□□□□ 0.14
UPF3B-204ENST00000619445 AFDNP55196 1824 aaKnown RBP15.9■□□□□ 0.14
UPF3B-204ENST00000619445 HTATSF1O43719 755 aaKnown RBP15.89■□□□□ 0.13
UPF3B-204ENST00000619445 CANXP27824 592 aaKnown RBP15.89■□□□□ 0.13
UPF3B-204ENST00000619445 IL6STP40189 918 aaPredicted RBP15.89■□□□□ 0.13
UPF3B-204ENST00000619445 BTBD11A6QL63 1104 aa15.88■□□□□ 0.13
UPF3B-204ENST00000619445 SERPINB2P05120 415 aa15.87■□□□□ 0.13
UPF3B-204ENST00000619445 PHACTR3Q96KR7 559 aa15.87■□□□□ 0.13
UPF3B-204ENST00000619445 ZC3H4Q9UPT8 1303 aaKnown RBP15.87■□□□□ 0.13
UPF3B-204ENST00000619445 DLEC1Q9Y238 1755 aa15.87■□□□□ 0.13
UPF3B-204ENST00000619445 HSPA6P17066 643 aa15.87■□□□□ 0.13
UPF3B-204ENST00000619445 BCL2L12Q9HB09 334 aa15.87■□□□□ 0.13
UPF3B-204ENST00000619445 SCN7AQ01118 1682 aa15.86■□□□□ 0.13
UPF3B-204ENST00000619445 CHRNA5P30532 468 aa15.86■□□□□ 0.13
UPF3B-204ENST00000619445 C9orf131Q5VYM1 1079 aa15.86■□□□□ 0.13
UPF3B-204ENST00000619445 PNNQ9H307 717 aaKnown RBP15.86■□□□□ 0.13
UPF3B-204ENST00000619445 KDM2BQ8NHM5 1336 aa15.86■□□□□ 0.13
UPF3B-204ENST00000619445 CARMIL3Q8ND23 1372 aa15.86■□□□□ 0.13
UPF3B-204ENST00000619445 H0YIN7 160 aa15.85■□□□□ 0.13
UPF3B-204ENST00000619445 KIF3CO14782 793 aa15.85■□□□□ 0.13
UPF3B-204ENST00000619445 TOMM70O94826 608 aa15.85■□□□□ 0.13
UPF3B-204ENST00000619445 TTLL6Q8N841 843 aa15.85■□□□□ 0.13
UPF3B-204ENST00000619445 RGL2O15211 777 aa15.84■□□□□ 0.13
UPF3B-204ENST00000619445 SNRPA1P09661 255 aaKnown RBP15.84■□□□□ 0.13
UPF3B-204ENST00000619445 PDE6BP35913 854 aa15.84■□□□□ 0.13
UPF3B-204ENST00000619445 SBF1O95248 1867 aa15.83■□□□□ 0.13
UPF3B-204ENST00000619445 CEP350Q5VT06 3117 aa15.83■□□□□ 0.13
UPF3B-204ENST00000619445 SETDB2Q96T68 719 aa15.83■□□□□ 0.12
UPF3B-204ENST00000619445 BRIP1Q9BX63 1249 aa15.83■□□□□ 0.12
UPF3B-204ENST00000619445 RNF181Q9P0P0 153 aa15.83■□□□□ 0.12
UPF3B-204ENST00000619445 ZNF652Q9Y2D9 606 aa15.83■□□□□ 0.12
UPF3B-204ENST00000619445 ZNF330Q9Y3S2 320 aaPredicted RBP15.83■□□□□ 0.12
UPF3B-204ENST00000619445 CLEC4GQ6UXB4 293 aa15.82■□□□□ 0.12
UPF3B-204ENST00000619445 C2CD5Q86YS7 1000 aa15.82■□□□□ 0.12
UPF3B-204ENST00000619445 C16orf71Q8IYS4 520 aaPredicted RBP15.82■□□□□ 0.12
UPF3B-204ENST00000619445 NPHP1O15259 732 aa15.81■□□□□ 0.12
UPF3B-204ENST00000619445 TAF7Q15545 349 aaPredicted RBP15.81■□□□□ 0.12
UPF3B-204ENST00000619445 BICDL1Q6ZP65 573 aa15.81■□□□□ 0.12
UPF3B-204ENST00000619445 PNISRQ8TF01 805 aaKnown RBP15.81■□□□□ 0.12
UPF3B-204ENST00000619445 TBC1D2BQ9UPU7 963 aa15.81■□□□□ 0.12
UPF3B-204ENST00000619445 A1BGP04217 495 aa15.8■□□□□ 0.12
UPF3B-204ENST00000619445 LMNB1P20700 586 aa15.8■□□□□ 0.12
UPF3B-204ENST00000619445 ST5P78524 1137 aa15.8■□□□□ 0.12
UPF3B-204ENST00000619445 TBC1D9BQ66K14 1250 aa15.8■□□□□ 0.12
UPF3B-204ENST00000619445 MCM10Q7L590 875 aa15.8■□□□□ 0.12
UPF3B-204ENST00000619445 DZIP3Q86Y13 1208 aaKnown RBP15.8■□□□□ 0.12
UPF3B-204ENST00000619445 CNBD1Q8NA66 436 aa15.8■□□□□ 0.12
UPF3B-204ENST00000619445 RBM46Q8TBY0 533 aaKnown RBP15.8■□□□□ 0.12
UPF3B-204ENST00000619445 BCORQ6W2J9 1755 aa15.8■□□□□ 0.12
UPF3B-204ENST00000619445 TNRC6CQ9HCJ0 1690 aaKnown RBP15.8■□□□□ 0.12
UPF3B-204ENST00000619445 CAMTA2O94983 1202 aa15.79■□□□□ 0.12
UPF3B-204ENST00000619445 APLP1P51693 650 aa15.79■□□□□ 0.12
UPF3B-204ENST00000619445 SOGA3Q5TF21 947 aa15.78■□□□□ 0.12
UPF3B-204ENST00000619445 PRR5LQ6MZQ0 368 aa15.78■□□□□ 0.12
UPF3B-204ENST00000619445 USP16Q9Y5T5 823 aa15.78■□□□□ 0.12
UPF3B-204ENST00000619445 KCNQ3O43525 872 aa15.77■□□□□ 0.12
UPF3B-204ENST00000619445 FSTL1Q12841 308 aa15.77■□□□□ 0.12
UPF3B-204ENST00000619445 CNKSR1Q969H4 720 aa15.77■□□□□ 0.12
UPF3B-204ENST00000619445 NMRK2Q9NPI5 230 aa15.77■□□□□ 0.12
UPF3B-204ENST00000619445 ANKRD31Q8N7Z5 1873 aa15.77■□□□□ 0.12
UPF3B-204ENST00000619445 MAPK8IP3Q9UPT6 1336 aa15.77■□□□□ 0.11
UPF3B-204ENST00000619445 ZNF622Q969S3 477 aaKnown RBP eCLIP15.76■□□□□ 0.113e-7■■■□□ 14.6
UPF3B-204ENST00000619445 DLG5Q8TDM6 1919 aa15.76■□□□□ 0.11
UPF3B-204ENST00000619445 RALBP1Q15311 655 aa15.75■□□□□ 0.11
UPF3B-204ENST00000619445 STYK1Q6J9G0 422 aa15.75■□□□□ 0.11
UPF3B-204ENST00000619445 LAMB4A4D0S4 1761 aa15.75■□□□□ 0.11
UPF3B-204ENST00000619445 DCTN1Q14203 1278 aa15.75■□□□□ 0.11
UPF3B-204ENST00000619445 NFE2L2Q16236 605 aa15.75■□□□□ 0.11
UPF3B-204ENST00000619445 TPTE2Q6XPS3 522 aa15.75■□□□□ 0.11
UPF3B-204ENST00000619445 NBPF5PQ86XG9 351 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms