RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 KCNQ3O43525 872 aa24.61■■□□□ 1.53
CCDC9-205ENST00000600117 CALD1Q05682 793 aaKnown RBP24.61■■□□□ 1.53
CCDC9-205ENST00000600117 MIS18AQ9NYP9 233 aa24.61■■□□□ 1.53
CCDC9-205ENST00000600117 CHL1O00533 1208 aa24.6■■□□□ 1.53
CCDC9-205ENST00000600117 ZNF853P0CG23 659 aa24.6■■□□□ 1.53
CCDC9-205ENST00000600117 APLP1P51693 650 aa24.6■■□□□ 1.53
CCDC9-205ENST00000600117 HNRNPUQ00839 825 aaKnown RBP eCLIP24.6■■□□□ 1.53
CCDC9-205ENST00000600117 ZNF790Q6PG37 636 aa24.6■■□□□ 1.53
CCDC9-205ENST00000600117 WDR63Q8IWG1 891 aa24.6■■□□□ 1.53
CCDC9-205ENST00000600117 BABAM1Q9NWV8 329 aa24.6■■□□□ 1.53
CCDC9-205ENST00000600117 CICQ96RK0 1608 aaPredicted RBP24.6■■□□□ 1.53
CCDC9-205ENST00000600117 IL16Q14005 1332 aa24.6■■□□□ 1.53
CCDC9-205ENST00000600117 WWC3Q9ULE0 1092 aa24.59■■□□□ 1.53
CCDC9-205ENST00000600117 AMIGO3Q86WK7 504 aa24.58■■□□□ 1.53
CCDC9-205ENST00000600117 CFAP44Q96MT7 982 aa24.58■■□□□ 1.53
CCDC9-205ENST00000600117 IFT57Q9NWB7 429 aa24.58■■□□□ 1.53
CCDC9-205ENST00000600117 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.57■■□□□ 1.52
CCDC9-205ENST00000600117 SLC4A9Q96Q91 983 aa24.57■■□□□ 1.52
CCDC9-205ENST00000600117 TSPYL4Q9UJ04 414 aa24.56■■□□□ 1.52
CCDC9-205ENST00000600117 ZNF831Q5JPB2 1677 aa24.56■■□□□ 1.52
CCDC9-205ENST00000600117 LOC102724428A0A0B4J2F2 783 aa24.55■■□□□ 1.52
CCDC9-205ENST00000600117 PTCD1O75127 700 aaKnown RBP24.55■■□□□ 1.52
CCDC9-205ENST00000600117 PHF14O94880 888 aa24.55■■□□□ 1.52
CCDC9-205ENST00000600117 SSFA2P28290 1259 aa24.55■■□□□ 1.52
CCDC9-205ENST00000600117 SIK1P57059 783 aa24.55■■□□□ 1.52
CCDC9-205ENST00000600117 GNAI1P63096 354 aa24.55■■□□□ 1.52
CCDC9-205ENST00000600117 TTC5Q8N0Z6 440 aa24.55■■□□□ 1.52
CCDC9-205ENST00000600117 ZNF496Q96IT1 587 aaPredicted RBP24.55■■□□□ 1.52
CCDC9-205ENST00000600117 SPINK5Q9NQ38 1064 aaPredicted RBP24.55■■□□□ 1.52
CCDC9-205ENST00000600117 LAS1LQ9Y4W2 734 aaKnown RBP24.55■■□□□ 1.52
CCDC9-205ENST00000600117 PCNTO95613 3336 aa24.54■■□□□ 1.52
CCDC9-205ENST00000600117 DNAJC5GQ8N7S2 189 aa24.54■■□□□ 1.52
CCDC9-205ENST00000600117 MBIPQ9NS73 344 aa24.54■■□□□ 1.52
CCDC9-205ENST00000600117 TOMM70O94826 608 aa24.53■■□□□ 1.52
CCDC9-205ENST00000600117 RBM42Q9BTD8 480 aaKnown RBP24.53■■□□□ 1.52
CCDC9-205ENST00000600117 TJP1Q07157 1748 aa24.52■■□□□ 1.52
CCDC9-205ENST00000600117 EIF4A1P60842 406 aaKnown RBP24.52■■□□□ 1.52
CCDC9-205ENST00000600117 SMIM5Q71RC9 77 aa24.52■■□□□ 1.52
CCDC9-205ENST00000600117 HEG1Q9ULI3 1381 aa24.52■■□□□ 1.52
CCDC9-205ENST00000600117 KIF13BQ9NQT8 1826 aa24.51■■□□□ 1.51
CCDC9-205ENST00000600117 ITPK1Q13572 414 aa24.51■■□□□ 1.51
CCDC9-205ENST00000600117 FMNL2Q96PY5 1086 aa24.51■■□□□ 1.51
CCDC9-205ENST00000600117 GOLGA2Q08379 1002 aa24.5■■□□□ 1.51
CCDC9-205ENST00000600117 ZBED9Q6R2W3 1325 aa24.5■■□□□ 1.51
CCDC9-205ENST00000600117 ATP6V1AP38606 617 aa24.49■■□□□ 1.51
CCDC9-205ENST00000600117 VSIG10Q8N0Z9 540 aa24.49■■□□□ 1.51
CCDC9-205ENST00000600117 TSR2Q969E8 191 aaKnown RBP24.49■■□□□ 1.51
CCDC9-205ENST00000600117 COL5A3P25940 1745 aaPredicted RBP24.48■■□□□ 1.51
CCDC9-205ENST00000600117 LINC00116Q8NCU8 138 aa24.48■■□□□ 1.51
CCDC9-205ENST00000600117 KIAA1551Q9HCM1 1747 aa24.48■■□□□ 1.51
CCDC9-205ENST00000600117 FANCIQ9NVI1 1328 aa24.48■■□□□ 1.51
CCDC9-205ENST00000600117 PXDNLA1KZ92 1463 aa24.47■■□□□ 1.51
CCDC9-205ENST00000600117 DNAJC10Q8IXB1 793 aa24.47■■□□□ 1.51
CCDC9-205ENST00000600117 CDCA7LQ96GN5 454 aa24.47■■□□□ 1.51
CCDC9-205ENST00000600117 SLFN5Q08AF3 891 aa24.46■■□□□ 1.51
CCDC9-205ENST00000600117 KRT24Q2M2I5 525 aa24.46■■□□□ 1.51
CCDC9-205ENST00000600117 N4BP2Q86UW6 1770 aaPredicted RBP24.46■■□□□ 1.51
CCDC9-205ENST00000600117 WDR90Q96KV7 1748 aa24.46■■□□□ 1.51
CCDC9-205ENST00000600117 PRAMEF22A3QJZ6 481 aa24.45■■□□□ 1.5
CCDC9-205ENST00000600117 E9PSI1 815 aa24.45■■□□□ 1.5
CCDC9-205ENST00000600117 MYH16Q9H6N6 1097 aa24.45■■□□□ 1.5
CCDC9-205ENST00000600117 GNPATO15228 680 aa24.44■■□□□ 1.5
CCDC9-205ENST00000600117 MMP10P09238 476 aa24.44■■□□□ 1.5
CCDC9-205ENST00000600117 SNRPA1P09661 255 aaKnown RBP24.44■■□□□ 1.5
CCDC9-205ENST00000600117 TGFB2P61812 414 aa24.44■■□□□ 1.5
CCDC9-205ENST00000600117 TRMT2AQ8IZ69 625 aaKnown RBP24.44■■□□□ 1.5
CCDC9-205ENST00000600117 LAMB4A4D0S4 1761 aa24.44■■□□□ 1.5
CCDC9-205ENST00000600117 BCS1LQ9Y276 419 aa24.43■■□□□ 1.5
CCDC9-205ENST00000600117 NMRK2Q9NPI5 230 aa24.42■■□□□ 1.5
CCDC9-205ENST00000600117 USP16Q9Y5T5 823 aa24.42■■□□□ 1.5
CCDC9-205ENST00000600117 CYP19A1P11511 503 aaPredicted RBP24.41■■□□□ 1.5
CCDC9-205ENST00000600117 C8orf58Q8NAV2 365 aa24.41■■□□□ 1.5
CCDC9-205ENST00000600117 TEX13AQ9BXU3 409 aaPredicted RBP24.41■■□□□ 1.5
CCDC9-205ENST00000600117 MYH14Q7Z406 1995 aaKnown RBP24.4■■□□□ 1.5
CCDC9-205ENST00000600117 RBM46Q8TBY0 533 aaKnown RBP24.4■■□□□ 1.5
CCDC9-205ENST00000600117 C10orf71Q711Q0 1435 aa24.4■■□□□ 1.5
CCDC9-205ENST00000600117 BRCA1P38398 1863 aaKnown RBP24.4■■□□□ 1.5
CCDC9-205ENST00000600117 A0A0G2JLW4 131 aa24.39■■□□□ 1.49
CCDC9-205ENST00000600117 DUSP27Q5VZP5 1158 aa24.39■■□□□ 1.49
CCDC9-205ENST00000600117 ARHGAP27Q6ZUM4 889 aa24.39■■□□□ 1.49
CCDC9-205ENST00000600117 YTHDC1Q96MU7 727 aaKnown RBP24.39■■□□□ 1.49
CCDC9-205ENST00000600117 CNTNAP4Q9C0A0 1308 aa24.38■■□□□ 1.49
CCDC9-205ENST00000600117 HOXB7P09629 217 aa24.38■■□□□ 1.49
CCDC9-205ENST00000600117 EXOSC9Q06265 439 aaKnown RBP24.38■■□□□ 1.49
CCDC9-205ENST00000600117 NLGN1Q8N2Q7 840 aa24.38■■□□□ 1.49
CCDC9-205ENST00000600117 TSPYL6Q8N831 410 aa24.38■■□□□ 1.49
CCDC9-205ENST00000600117 CRKLP46109 303 aaKnown RBP24.37■■□□□ 1.49
CCDC9-205ENST00000600117 RC3H1Q5TC82 1133 aaKnown RBP24.37■■□□□ 1.49
CCDC9-205ENST00000600117 INTS5Q6P9B9 1019 aaKnown RBP24.37■■□□□ 1.49
CCDC9-205ENST00000600117 KLRG1Q96E93 195 aa24.37■■□□□ 1.49
CCDC9-205ENST00000600117 ARFGEF1Q9Y6D6 1849 aa24.36■■□□□ 1.49
CCDC9-205ENST00000600117 ELL2O00472 640 aaPredicted RBP24.36■■□□□ 1.49
CCDC9-205ENST00000600117 STARD3NLO95772 234 aa24.36■■□□□ 1.49
CCDC9-205ENST00000600117 JMYQ8N9B5 988 aa24.36■■□□□ 1.49
CCDC9-205ENST00000600117 TRAPPC3LQ5T215 181 aa24.35■■□□□ 1.49
CCDC9-205ENST00000600117 C16orf71Q8IYS4 520 aaPredicted RBP24.35■■□□□ 1.49
CCDC9-205ENST00000600117 CCDC87Q9NVE4 849 aa24.35■■□□□ 1.49
CCDC9-205ENST00000600117 C4AP0C0L4 1744 aa24.35■■□□□ 1.49
CCDC9-205ENST00000600117 SOS1Q07889 1333 aaPredicted RBP24.35■■□□□ 1.49
CCDC9-205ENST00000600117 DPEP1P16444 411 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms