RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ERBB4Q15303 1308 aa21.47■■□□□ 1.03
SHKBP1-219ENST00000599575 HNRNPUQ00839 825 aaKnown RBP eCLIP21.46■■□□□ 1.03
SHKBP1-219ENST00000599575 TJP1Q07157 1748 aa21.46■■□□□ 1.03
SHKBP1-219ENST00000599575 TAF1LQ8IZX4 1826 aa21.45■■□□□ 1.03
SHKBP1-219ENST00000599575 GNPATO15228 680 aa21.45■■□□□ 1.02
SHKBP1-219ENST00000599575 INTS5Q6P9B9 1019 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-219ENST00000599575 SLC16A10Q8TF71 515 aa21.45■■□□□ 1.02
SHKBP1-219ENST00000599575 COL5A3P25940 1745 aaPredicted RBP21.45■■□□□ 1.02
SHKBP1-219ENST00000599575 SENP3-EIF4A1A0A087X0R7 540 aa21.44■■□□□ 1.02
SHKBP1-219ENST00000599575 R3HDM1Q15032 1099 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-219ENST00000599575 USP16Q9Y5T5 823 aa21.44■■□□□ 1.02
SHKBP1-219ENST00000599575 IL6STP40189 918 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-219ENST00000599575 FANCIQ9NVI1 1328 aa21.43■■□□□ 1.02
SHKBP1-219ENST00000599575 TRAPPC3LQ5T215 181 aa21.42■■□□□ 1.02
SHKBP1-219ENST00000599575 ZBED9Q6R2W3 1325 aa21.42■■□□□ 1.02
SHKBP1-219ENST00000599575 NPM2Q86SE8 214 aaKnown RBP21.42■■□□□ 1.02
SHKBP1-219ENST00000599575 PNPLA7Q6ZV29 1317 aa21.41■■□□□ 1.02
SHKBP1-219ENST00000599575 A0A087WZG4 1122 aa21.41■■□□□ 1.02
SHKBP1-219ENST00000599575 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-219ENST00000599575 DUSP27Q5VZP5 1158 aa21.41■■□□□ 1.02
SHKBP1-219ENST00000599575 TSR2Q969E8 191 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-219ENST00000599575 QSER1Q2KHR3 1735 aa21.41■■□□□ 1.02
SHKBP1-219ENST00000599575 EIF5P55010 431 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-219ENST00000599575 SLFN5Q08AF3 891 aa21.4■■□□□ 1.02
SHKBP1-219ENST00000599575 ZBTB1Q9Y2K1 713 aa21.4■■□□□ 1.02
SHKBP1-219ENST00000599575 PRAMEF22A3QJZ6 481 aa21.39■■□□□ 1.01
SHKBP1-219ENST00000599575 RGL2O15211 777 aa21.38■■□□□ 1.01
SHKBP1-219ENST00000599575 A1BGP04217 495 aa21.38■■□□□ 1.01
SHKBP1-219ENST00000599575 TRMT2AQ8IZ69 625 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-219ENST00000599575 SPINK5Q9NQ38 1064 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-219ENST00000599575 CANXP27824 592 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-219ENST00000599575 RFC4P35249 363 aa21.37■■□□□ 1.01
SHKBP1-219ENST00000599575 HDGFL1Q5TGJ6 251 aa21.37■■□□□ 1.01
SHKBP1-219ENST00000599575 COL23A1Q86Y22 540 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-219ENST00000599575 C8orf58Q8NAV2 365 aa21.37■■□□□ 1.01
SHKBP1-219ENST00000599575 DBF4Q9UBU7 674 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-219ENST00000599575 LAMB4A4D0S4 1761 aa21.37■■□□□ 1.01
SHKBP1-219ENST00000599575 PSDA5PKW4 1024 aaPredicted RBP21.36■■□□□ 1.01
SHKBP1-219ENST00000599575 CT47B1P0C2W7 299 aaPredicted RBP21.36■■□□□ 1.01
SHKBP1-219ENST00000599575 TWISTNBQ3B726 338 aaPredicted RBP21.36■■□□□ 1.01
SHKBP1-219ENST00000599575 CCDC30Q5VVM6 783 aa21.36■■□□□ 1.01
SHKBP1-219ENST00000599575 ARHGEF1Q92888 912 aaKnown RBP21.36■■□□□ 1.01
SHKBP1-219ENST00000599575 ZNF428Q96B54 188 aa21.36■■□□□ 1.01
SHKBP1-219ENST00000599575 COL15A1P39059 1388 aa21.36■■□□□ 1.01
SHKBP1-219ENST00000599575 EIF2S2P20042 333 aaKnown RBP21.35■■□□□ 1.01
SHKBP1-219ENST00000599575 KRT24Q2M2I5 525 aa21.35■■□□□ 1.01
SHKBP1-219ENST00000599575 MTFR1LQ9H019 292 aa21.35■■□□□ 1.01
SHKBP1-219ENST00000599575 DDX21Q9NR30 783 aaKnown RBP eCLIP21.35■■□□□ 1.01
SHKBP1-219ENST00000599575 UBR3Q6ZT12 1888 aa21.35■■□□□ 1.01
SHKBP1-219ENST00000599575 NBPF26B4DH59 902 aa21.34■■□□□ 1.01
SHKBP1-219ENST00000599575 PHF14O94880 888 aa21.34■■□□□ 1.01
SHKBP1-219ENST00000599575 EXOSC9Q06265 439 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-219ENST00000599575 NBPF10Q6P3W6 841 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-219ENST00000599575 NBPF15Q8N660 670 aa21.34■■□□□ 1.01
SHKBP1-219ENST00000599575 MSH5O43196 834 aa21.33■■□□□ 1.01
SHKBP1-219ENST00000599575 ZPR1O75312 459 aa21.33■■□□□ 1.01
SHKBP1-219ENST00000599575 AMIGO3Q86WK7 504 aa21.33■■□□□ 1.01
SHKBP1-219ENST00000599575 HYPKQ9NX55 129 aa21.33■■□□□ 1.01
SHKBP1-219ENST00000599575 NARFQ9UHQ1 456 aa21.33■■□□□ 1.01
SHKBP1-219ENST00000599575 MYH14Q7Z406 1995 aaKnown RBP21.33■■□□□ 1.01
SHKBP1-219ENST00000599575 PDIA6Q15084 440 aa21.32■■□□□ 1
SHKBP1-219ENST00000599575 NLGN1Q8N2Q7 840 aa21.32■■□□□ 1
SHKBP1-219ENST00000599575 TSPYL6Q8N831 410 aa21.32■■□□□ 1
SHKBP1-219ENST00000599575 USP42Q9H9J4 1324 aaKnown RBP21.31■■□□□ 1
SHKBP1-219ENST00000599575 ELL2O00472 640 aaPredicted RBP21.31■■□□□ 1
SHKBP1-219ENST00000599575 VAMP4O75379 141 aa21.31■■□□□ 1
SHKBP1-219ENST00000599575 CDCA7LQ96GN5 454 aa21.31■■□□□ 1
SHKBP1-219ENST00000599575 STK31Q9BXU1 1019 aa21.31■■□□□ 1
SHKBP1-219ENST00000599575 SPON1Q9HCB6 807 aa21.3■■□□□ 1
SHKBP1-219ENST00000599575 CASZ1Q86V15 1759 aa21.3■■□□□ 1
SHKBP1-219ENST00000599575 ERVV-1B6SEH8 477 aa21.29■■□□□ 1
SHKBP1-219ENST00000599575 CLEC4GQ6UXB4 293 aa21.29■■□□□ 1
SHKBP1-219ENST00000599575 LRP10Q7Z4F1 713 aa21.29■■□□□ 1
SHKBP1-219ENST00000599575 DZIP3Q86Y13 1208 aaKnown RBP21.29■■□□□ 1
SHKBP1-219ENST00000599575 CHPF2Q9P2E5 772 aa21.29■■□□□ 1
SHKBP1-219ENST00000599575 PDGFDQ9GZP0 370 aaPredicted RBP21.28■■□□□ 1
SHKBP1-219ENST00000599575 ZNF652Q9Y2D9 606 aa21.28■■□□□ 1
SHKBP1-219ENST00000599575 ZNF330Q9Y3S2 320 aaPredicted RBP21.28■■□□□ 1
SHKBP1-219ENST00000599575 TUBGCP6Q96RT7 1819 aa21.27■■□□□ 1
SHKBP1-219ENST00000599575 GYS1P13807 737 aa21.27■■□□□ 1
SHKBP1-219ENST00000599575 MYL6BP14649 208 aa21.27■■□□□ 1
SHKBP1-219ENST00000599575 KIF6Q6ZMV9 814 aa21.27■■□□□ 1
SHKBP1-219ENST00000599575 POLD1P28340 1107 aa21.26■□□□□ 0.99
SHKBP1-219ENST00000599575 ZBTB7AO95365 584 aa21.25■□□□□ 0.99
SHKBP1-219ENST00000599575 PIP4K2AP48426 406 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-219ENST00000599575 USPL1Q5W0Q7 1092 aa21.25■□□□□ 0.99
SHKBP1-219ENST00000599575 NECTIN2Q92692 538 aa21.25■□□□□ 0.99
SHKBP1-219ENST00000599575 TBC1D2BQ9UPU7 963 aa21.25■□□□□ 0.99
SHKBP1-219ENST00000599575 CAMTA2O94983 1202 aa21.24■□□□□ 0.99
SHKBP1-219ENST00000599575 PROSER3Q2NL68 480 aa21.24■□□□□ 0.99
SHKBP1-219ENST00000599575 ALDH1L2Q3SY69 923 aa21.24■□□□□ 0.99
SHKBP1-219ENST00000599575 SMIM5Q71RC9 77 aa21.24■□□□□ 0.99
SHKBP1-219ENST00000599575 MAP3K15Q6ZN16 1313 aa21.24■□□□□ 0.99
SHKBP1-219ENST00000599575 DDX58O95786 925 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-219ENST00000599575 COPS6Q7L5N1 327 aa21.23■□□□□ 0.99
SHKBP1-219ENST00000599575 ARXQ96QS3 562 aa21.23■□□□□ 0.99
SHKBP1-219ENST00000599575 C4AP0C0L4 1744 aa21.22■□□□□ 0.99
SHKBP1-219ENST00000599575 SLC4A2P04920 1241 aa21.22■□□□□ 0.99
SHKBP1-219ENST00000599575 XAGE3Q8WTP9 111 aa21.22■□□□□ 0.99
SHKBP1-219ENST00000599575 SGIP1Q9BQI5 828 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms