RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 SNRPA1P09661 255 aaKnown RBP25.67■■□□□ 1.7
SHKBP1-214ENST00000597396 COL23A1Q86Y22 540 aaPredicted RBP25.67■■□□□ 1.7
SHKBP1-214ENST00000597396 MTFR1LQ9H019 292 aa25.67■■□□□ 1.7
SHKBP1-214ENST00000597396 CCDC87Q9NVE4 849 aa25.67■■□□□ 1.7
SHKBP1-214ENST00000597396 SALL2Q9Y467 1007 aaPredicted RBP25.67■■□□□ 1.7
SHKBP1-214ENST00000597396 RPS6KA4O75676 772 aa25.66■■□□□ 1.7
SHKBP1-214ENST00000597396 CCDC27Q2M243 656 aa25.66■■□□□ 1.7
SHKBP1-214ENST00000597396 C4AP0C0L4 1744 aa25.66■■□□□ 1.7
SHKBP1-214ENST00000597396 YY1P25490 414 aa25.65■■□□□ 1.7
SHKBP1-214ENST00000597396 EIF4A1P60842 406 aaKnown RBP25.65■■□□□ 1.7
SHKBP1-214ENST00000597396 NCBP3Q53F19 620 aaKnown RBP25.65■■□□□ 1.7
SHKBP1-214ENST00000597396 SMIM5Q71RC9 77 aa25.65■■□□□ 1.7
SHKBP1-214ENST00000597396 AMIGO3Q86WK7 504 aa25.65■■□□□ 1.7
SHKBP1-214ENST00000597396 SLC16A10Q8TF71 515 aa25.65■■□□□ 1.7
SHKBP1-214ENST00000597396 INTS5Q6P9B9 1019 aaKnown RBP25.64■■□□□ 1.7
SHKBP1-214ENST00000597396 CHL1O00533 1208 aa25.63■■□□□ 1.69
SHKBP1-214ENST00000597396 WWC1Q8IX03 1113 aa25.63■■□□□ 1.69
SHKBP1-214ENST00000597396 CFAP44Q96MT7 982 aa25.63■■□□□ 1.69
SHKBP1-214ENST00000597396 PRAMEF22A3QJZ6 481 aa25.62■■□□□ 1.69
SHKBP1-214ENST00000597396 ADRA2BP18089 450 aa25.62■■□□□ 1.69
SHKBP1-214ENST00000597396 GNAI1P63096 354 aa25.62■■□□□ 1.69
SHKBP1-214ENST00000597396 TRAPPC3LQ5T215 181 aa25.62■■□□□ 1.69
SHKBP1-214ENST00000597396 IFT57Q9NWB7 429 aa25.62■■□□□ 1.69
SHKBP1-214ENST00000597396 ZBTB1Q9Y2K1 713 aa25.62■■□□□ 1.69
SHKBP1-214ENST00000597396 USP16Q9Y5T5 823 aa25.62■■□□□ 1.69
SHKBP1-214ENST00000597396 NGEFQ8N5V2 710 aa25.61■■□□□ 1.69
SHKBP1-214ENST00000597396 CANXP27824 592 aaKnown RBP25.6■■□□□ 1.69
SHKBP1-214ENST00000597396 GIGYF1O75420 1035 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-214ENST00000597396 FHDC1Q9C0D6 1143 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-214ENST00000597396 COL24A1Q17RW2 1714 aa25.59■■□□□ 1.69
SHKBP1-214ENST00000597396 SOS1Q07889 1333 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-214ENST00000597396 A1BGP04217 495 aa25.58■■□□□ 1.69
SHKBP1-214ENST00000597396 ZNF853P0CG23 659 aa25.58■■□□□ 1.69
SHKBP1-214ENST00000597396 RFC4P35249 363 aa25.58■■□□□ 1.69
SHKBP1-214ENST00000597396 ARHGEF1Q92888 912 aaKnown RBP25.58■■□□□ 1.69
SHKBP1-214ENST00000597396 SGIP1Q9BQI5 828 aa25.58■■□□□ 1.69
SHKBP1-214ENST00000597396 MBIPQ9NS73 344 aa25.58■■□□□ 1.69
SHKBP1-214ENST00000597396 SYT17Q9BSW7 474 aa25.57■■□□□ 1.68
SHKBP1-214ENST00000597396 COL15A1P39059 1388 aa25.56■■□□□ 1.68
SHKBP1-214ENST00000597396 NPM2Q86SE8 214 aaKnown RBP25.56■■□□□ 1.68
SHKBP1-214ENST00000597396 ZNF330Q9Y3S2 320 aaPredicted RBP25.56■■□□□ 1.68
SHKBP1-214ENST00000597396 MSL1Q68DK7 614 aa25.55■■□□□ 1.68
SHKBP1-214ENST00000597396 ARXQ96QS3 562 aa25.55■■□□□ 1.68
SHKBP1-214ENST00000597396 IL16Q14005 1332 aa25.55■■□□□ 1.68
SHKBP1-214ENST00000597396 IL6STP40189 918 aaPredicted RBP25.54■■□□□ 1.68
SHKBP1-214ENST00000597396 WDR63Q8IWG1 891 aa25.54■■□□□ 1.68
SHKBP1-214ENST00000597396 POLD1P28340 1107 aa25.53■■□□□ 1.68
SHKBP1-214ENST00000597396 PIP4K2AP48426 406 aaPredicted RBP25.53■■□□□ 1.68
SHKBP1-214ENST00000597396 A0A087WZG4 1122 aa25.52■■□□□ 1.68
SHKBP1-214ENST00000597396 EIF5P55010 431 aaKnown RBP25.52■■□□□ 1.68
SHKBP1-214ENST00000597396 KRT24Q2M2I5 525 aa25.52■■□□□ 1.68
SHKBP1-214ENST00000597396 ZPR1O75312 459 aa25.51■■□□□ 1.67
SHKBP1-214ENST00000597396 EIF2S2P20042 333 aaKnown RBP25.51■■□□□ 1.67
SHKBP1-214ENST00000597396 TSR2Q969E8 191 aaKnown RBP25.5■■□□□ 1.67
SHKBP1-214ENST00000597396 USP42Q9H9J4 1324 aaKnown RBP25.5■■□□□ 1.67
SHKBP1-214ENST00000597396 SRP68Q9UHB9 627 aaKnown RBP25.5■■□□□ 1.67
SHKBP1-214ENST00000597396 SCN7AQ01118 1682 aa25.48■■□□□ 1.67
SHKBP1-214ENST00000597396 NBPF26B4DH59 902 aa25.48■■□□□ 1.67
SHKBP1-214ENST00000597396 DUSP27Q5VZP5 1158 aa25.48■■□□□ 1.67
SHKBP1-214ENST00000597396 NBPF10Q6P3W6 841 aaKnown RBP25.48■■□□□ 1.67
SHKBP1-214ENST00000597396 NBPF15Q8N660 670 aa25.48■■□□□ 1.67
SHKBP1-214ENST00000597396 NARFQ9UHQ1 456 aa25.48■■□□□ 1.67
SHKBP1-214ENST00000597396 BCORQ6W2J9 1755 aa25.48■■□□□ 1.67
SHKBP1-214ENST00000597396 ERBB4Q15303 1308 aa25.47■■□□□ 1.67
SHKBP1-214ENST00000597396 HOXB7P09629 217 aa25.47■■□□□ 1.67
SHKBP1-214ENST00000597396 GYS1P13807 737 aa25.47■■□□□ 1.67
SHKBP1-214ENST00000597396 USPL1Q5W0Q7 1092 aa25.47■■□□□ 1.67
SHKBP1-214ENST00000597396 NLGN1Q8N2Q7 840 aa25.47■■□□□ 1.67
SHKBP1-214ENST00000597396 NECTIN2Q92692 538 aa25.47■■□□□ 1.67
SHKBP1-214ENST00000597396 TBC1D2BQ9UPU7 963 aa25.46■■□□□ 1.67
SHKBP1-214ENST00000597396 ELL2O00472 640 aaPredicted RBP25.45■■□□□ 1.66
SHKBP1-214ENST00000597396 MYL6BP14649 208 aa25.45■■□□□ 1.66
SHKBP1-214ENST00000597396 HDGFL1Q5TGJ6 251 aa25.45■■□□□ 1.66
SHKBP1-214ENST00000597396 DZIP3Q86Y13 1208 aaKnown RBP25.45■■□□□ 1.66
SHKBP1-214ENST00000597396 KLHL34Q8N239 644 aa25.45■■□□□ 1.66
SHKBP1-214ENST00000597396 ZNF521Q96K83 1311 aa25.44■■□□□ 1.66
SHKBP1-214ENST00000597396 FANCIQ9NVI1 1328 aa25.44■■□□□ 1.66
SHKBP1-214ENST00000597396 MYH16Q9H6N6 1097 aa25.44■■□□□ 1.66
SHKBP1-214ENST00000597396 C8orf58Q8NAV2 365 aa25.43■■□□□ 1.66
SHKBP1-214ENST00000597396 GOLGA2Q08379 1002 aa25.42■■□□□ 1.66
SHKBP1-214ENST00000597396 FKBP8Q14318 412 aa25.42■■□□□ 1.66
SHKBP1-214ENST00000597396 MMP10P09238 476 aa25.41■■□□□ 1.66
SHKBP1-214ENST00000597396 SPINK5Q9NQ38 1064 aaPredicted RBP25.41■■□□□ 1.66
SHKBP1-214ENST00000597396 NUP98P52948 1817 aa25.4■■□□□ 1.66
SHKBP1-214ENST00000597396 CAMTA2O94983 1202 aa25.39■■□□□ 1.66
SHKBP1-214ENST00000597396 ANXA1P04083 346 aa25.39■■□□□ 1.66
SHKBP1-214ENST00000597396 TSPYL6Q8N831 410 aa25.39■■□□□ 1.66
SHKBP1-214ENST00000597396 CHMP4AQ9BY43 222 aa25.39■■□□□ 1.66
SHKBP1-214ENST00000597396 BCL2L12Q9HB09 334 aa25.39■■□□□ 1.66
SHKBP1-214ENST00000597396 DDX21Q9NR30 783 aaKnown RBP eCLIP25.39■■□□□ 1.66
SHKBP1-214ENST00000597396 PDIA6Q15084 440 aa25.38■■□□□ 1.65
SHKBP1-214ENST00000597396 PROSER3Q2NL68 480 aa25.38■■□□□ 1.65
SHKBP1-214ENST00000597396 TWISTNBQ3B726 338 aaPredicted RBP25.38■■□□□ 1.65
SHKBP1-214ENST00000597396 KIF6Q6ZMV9 814 aa25.38■■□□□ 1.65
SHKBP1-214ENST00000597396 CHPF2Q9P2E5 772 aa25.38■■□□□ 1.65
SHKBP1-214ENST00000597396 PARP3Q9Y6F1 533 aa25.38■■□□□ 1.65
SHKBP1-214ENST00000597396 CACNA1FO60840 1977 aa25.38■■□□□ 1.65
SHKBP1-214ENST00000597396 AFDNP55196 1824 aaKnown RBP25.37■■□□□ 1.65
SHKBP1-214ENST00000597396 HNRNPUQ00839 825 aaKnown RBP eCLIP25.37■■□□□ 1.65
SHKBP1-214ENST00000597396 GPR162Q16538 588 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms