RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 DCTN1Q14203 1278 aa13.95□□□□□ -0.18
CCDC9-203ENST00000596938 FKBP8Q14318 412 aa13.95□□□□□ -0.18
CCDC9-203ENST00000596938 TAF7Q15545 349 aaPredicted RBP13.95□□□□□ -0.18
CCDC9-203ENST00000596938 NARFQ9UHQ1 456 aa13.95□□□□□ -0.18
CCDC9-203ENST00000596938 COL5A3P25940 1745 aaPredicted RBP13.95□□□□□ -0.18
CCDC9-203ENST00000596938 CANXP27824 592 aaKnown RBP13.94□□□□□ -0.18
CCDC9-203ENST00000596938 NFE2L2Q16236 605 aa13.94□□□□□ -0.18
CCDC9-203ENST00000596938 A0A087WZG4 1122 aa13.93□□□□□ -0.18
CCDC9-203ENST00000596938 USPL1Q5W0Q7 1092 aa13.93□□□□□ -0.18
CCDC9-203ENST00000596938 MYH14Q7Z406 1995 aaKnown RBP13.92□□□□□ -0.18
CCDC9-203ENST00000596938 SNRPA1P09661 255 aaKnown RBP13.92□□□□□ -0.18
CCDC9-203ENST00000596938 IL6STP40189 918 aaPredicted RBP13.92□□□□□ -0.18
CCDC9-203ENST00000596938 PNISRQ8TF01 805 aaKnown RBP13.92□□□□□ -0.18
CCDC9-203ENST00000596938 COL15A1P39059 1388 aa13.92□□□□□ -0.18
CCDC9-203ENST00000596938 TJP1Q07157 1748 aa13.92□□□□□ -0.18
CCDC9-203ENST00000596938 MAPK8IP3Q9UPT6 1336 aa13.91□□□□□ -0.18
CCDC9-203ENST00000596938 POLRMTO00411 1230 aaKnown RBP13.91□□□□□ -0.18
CCDC9-203ENST00000596938 A1BGP04217 495 aa13.91□□□□□ -0.18
CCDC9-203ENST00000596938 DDR1Q08345 913 aa13.91□□□□□ -0.18
CCDC9-203ENST00000596938 PRKRIP1Q9H875 184 aaPredicted RBP13.91□□□□□ -0.18
CCDC9-203ENST00000596938 BCL2L12Q9HB09 334 aa13.91□□□□□ -0.18
CCDC9-203ENST00000596938 USP16Q9Y5T5 823 aa13.91□□□□□ -0.18
CCDC9-203ENST00000596938 A0A0G2JLW4 131 aa13.9□□□□□ -0.18
CCDC9-203ENST00000596938 NFIXQ14938 502 aa13.9□□□□□ -0.18
CCDC9-203ENST00000596938 ZNF784Q8NCA9 323 aaPredicted RBP13.9□□□□□ -0.18
CCDC9-203ENST00000596938 C10orf71Q711Q0 1435 aa13.9□□□□□ -0.19
CCDC9-203ENST00000596938 MIS18AQ9NYP9 233 aa13.89□□□□□ -0.19
CCDC9-203ENST00000596938 DPEP1P16444 411 aa13.88□□□□□ -0.19
CCDC9-203ENST00000596938 KCNA3P22001 575 aa13.88□□□□□ -0.19
CCDC9-203ENST00000596938 RIPK4P57078 832 aa13.88□□□□□ -0.19
CCDC9-203ENST00000596938 NPM2Q86SE8 214 aaKnown RBP13.88□□□□□ -0.19
CCDC9-203ENST00000596938 UBR2Q8IWV8 1755 aa13.88□□□□□ -0.19
CCDC9-203ENST00000596938 PRAMEF22A3QJZ6 481 aa13.87□□□□□ -0.19
CCDC9-203ENST00000596938 TMPOP42166 694 aaKnown RBP13.87□□□□□ -0.19
CCDC9-203ENST00000596938 TBC1D2BQ9UPU7 963 aa13.87□□□□□ -0.19
CCDC9-203ENST00000596938 PXDNLA1KZ92 1463 aa13.87□□□□□ -0.19
CCDC9-203ENST00000596938 GIGYF1O75420 1035 aaPredicted RBP13.86□□□□□ -0.19
CCDC9-203ENST00000596938 SERPINB2P05120 415 aa13.86□□□□□ -0.19
CCDC9-203ENST00000596938 EIF4A1P60842 406 aaKnown RBP13.86□□□□□ -0.19
CCDC9-203ENST00000596938 LMOD3Q0VAK6 560 aa13.86□□□□□ -0.19
CCDC9-203ENST00000596938 WDR43Q15061 677 aaKnown RBP eCLIP13.86□□□□□ -0.19
CCDC9-203ENST00000596938 THUMPD2Q9BTF0 503 aaKnown RBP13.86□□□□□ -0.19
CCDC9-203ENST00000596938 BABAM1Q9NWV8 329 aa13.86□□□□□ -0.19
CCDC9-203ENST00000596938 PIM2Q9P1W9 311 aa13.86□□□□□ -0.19
CCDC9-203ENST00000596938 ADAMTS8Q9UP79 889 aa13.86□□□□□ -0.19
CCDC9-203ENST00000596938 SIPA1L3O60292 1781 aaPredicted RBP13.86□□□□□ -0.19
CCDC9-203ENST00000596938 C4AP0C0L4 1744 aa13.85□□□□□ -0.19
CCDC9-203ENST00000596938 CAMTA2O94983 1202 aa13.85□□□□□ -0.19
CCDC9-203ENST00000596938 RUNDC1Q96C34 613 aa13.85□□□□□ -0.19
CCDC9-203ENST00000596938 WWC3Q9ULE0 1092 aa13.85□□□□□ -0.19
CCDC9-203ENST00000596938 BCS1LQ9Y276 419 aa13.85□□□□□ -0.19
CCDC9-203ENST00000596938 ZNF330Q9Y3S2 320 aaPredicted RBP13.85□□□□□ -0.19
CCDC9-203ENST00000596938 NBPF26B4DH59 902 aa13.84□□□□□ -0.19
CCDC9-203ENST00000596938 RGL2O15211 777 aa13.84□□□□□ -0.19
CCDC9-203ENST00000596938 TBC1D9BQ66K14 1250 aa13.84□□□□□ -0.19
CCDC9-203ENST00000596938 NBPF10Q6P3W6 841 aaKnown RBP13.84□□□□□ -0.19
CCDC9-203ENST00000596938 CLEC4GQ6UXB4 293 aa13.84□□□□□ -0.19
CCDC9-203ENST00000596938 DZIP3Q86Y13 1208 aaKnown RBP13.84□□□□□ -0.19
CCDC9-203ENST00000596938 NBPF15Q8N660 670 aa13.84□□□□□ -0.19
CCDC9-203ENST00000596938 BICDL1Q6ZP65 573 aa13.83□□□□□ -0.2
CCDC9-203ENST00000596938 SETDB2Q96T68 719 aa13.83□□□□□ -0.2
CCDC9-203ENST00000596938 PIP4K2AP48426 406 aaPredicted RBP13.82□□□□□ -0.2
CCDC9-203ENST00000596938 DALRD3Q5D0E6 543 aaKnown RBP13.82□□□□□ -0.2
CCDC9-203ENST00000596938 CCDC146Q8IYE0 955 aa13.82□□□□□ -0.2
CCDC9-203ENST00000596938 TSPYL4Q9UJ04 414 aa13.82□□□□□ -0.2
CCDC9-203ENST00000596938 VIRMAQ69YN4 1812 aaKnown RBP13.82□□□□□ -0.2
CCDC9-203ENST00000596938 ZNF316A6NFI3 1004 aaPredicted RBP13.81□□□□□ -0.2
CCDC9-203ENST00000596938 CHRNA5P30532 468 aa13.81□□□□□ -0.2
CCDC9-203ENST00000596938 BRIP1Q9BX63 1249 aa13.81□□□□□ -0.2
CCDC9-203ENST00000596938 TRIM35Q9UPQ4 493 aa13.81□□□□□ -0.2
CCDC9-203ENST00000596938 PDZRN3Q9UPQ7 1066 aa13.81□□□□□ -0.2
CCDC9-203ENST00000596938 ZNF652Q9Y2D9 606 aa13.81□□□□□ -0.2
CCDC9-203ENST00000596938 RRP7AQ9Y3A4 280 aaKnown RBP13.81□□□□□ -0.2
CCDC9-203ENST00000596938 KIF13BQ9NQT8 1826 aa13.8□□□□□ -0.2
CCDC9-203ENST00000596938 CHL1O00533 1208 aa13.8□□□□□ -0.2
CCDC9-203ENST00000596938 NEUROD2Q15784 382 aa13.8□□□□□ -0.2
CCDC9-203ENST00000596938 ARHGAP27Q6ZUM4 889 aa13.8□□□□□ -0.2
CCDC9-203ENST00000596938 CARMIL3Q8ND23 1372 aa13.8□□□□□ -0.2
CCDC9-203ENST00000596938 H0YIN7 160 aa13.79□□□□□ -0.2
CCDC9-203ENST00000596938 PDE6BP35913 854 aa13.79□□□□□ -0.2
CCDC9-203ENST00000596938 PRR5LQ6MZQ0 368 aa13.79□□□□□ -0.2
CCDC9-203ENST00000596938 ERVV-1B6SEH8 477 aa13.78□□□□□ -0.2
CCDC9-203ENST00000596938 C2CD5Q86YS7 1000 aa13.78□□□□□ -0.2
CCDC9-203ENST00000596938 ERBB4Q15303 1308 aa13.78□□□□□ -0.2
CCDC9-203ENST00000596938 CHD4Q14839 1912 aa13.78□□□□□ -0.2
CCDC9-203ENST00000596938 ADCY9O60503 1353 aa13.77□□□□□ -0.21
CCDC9-203ENST00000596938 TTLL6Q8N841 843 aa13.77□□□□□ -0.21
CCDC9-203ENST00000596938 CNBD1Q8NA66 436 aa13.77□□□□□ -0.21
CCDC9-203ENST00000596938 KIAA1551Q9HCM1 1747 aa13.77□□□□□ -0.21
CCDC9-203ENST00000596938 HLFQ16534 295 aa13.76□□□□□ -0.21
CCDC9-203ENST00000596938 TPTE2Q6XPS3 522 aa13.76□□□□□ -0.21
CCDC9-203ENST00000596938 ATP10DQ9P241 1426 aa13.75□□□□□ -0.21
CCDC9-203ENST00000596938 MAP3K15Q6ZN16 1313 aa13.75□□□□□ -0.21
CCDC9-203ENST00000596938 APAF1O14727 1248 aa13.75□□□□□ -0.21
CCDC9-203ENST00000596938 NPHP1O15259 732 aa13.75□□□□□ -0.21
CCDC9-203ENST00000596938 MYL6BP14649 208 aa13.75□□□□□ -0.21
CCDC9-203ENST00000596938 ST5P78524 1137 aa13.75□□□□□ -0.21
CCDC9-203ENST00000596938 PDIA6Q15084 440 aa13.75□□□□□ -0.21
CCDC9-203ENST00000596938 NBPF5PQ86XG9 351 aaPredicted RBP13.75□□□□□ -0.21
CCDC9-203ENST00000596938 NGEFQ8N5V2 710 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms