RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MCM10Q7L590 875 aa14.08□□□□□ -0.16
LIG1-213ENST00000596672 GAS2L2Q8NHY3 880 aa14.08□□□□□ -0.16
LIG1-213ENST00000596672 POLRMTO00411 1230 aaKnown RBP14.07□□□□□ -0.16
LIG1-213ENST00000596672 EIF5P55010 431 aaKnown RBP14.07□□□□□ -0.16
LIG1-213ENST00000596672 VSIG10Q8N0Z9 540 aa14.07□□□□□ -0.16
LIG1-213ENST00000596672 PLEKHF1Q96S99 279 aa14.07□□□□□ -0.16
LIG1-213ENST00000596672 HEG1Q9ULI3 1381 aa14.07□□□□□ -0.16
LIG1-213ENST00000596672 GRIN3BO60391 1043 aa14.06□□□□□ -0.16
LIG1-213ENST00000596672 FCHSD2O94868 740 aa14.06□□□□□ -0.16
LIG1-213ENST00000596672 A1BGP04217 495 aa14.06□□□□□ -0.16
LIG1-213ENST00000596672 CANXP27824 592 aaKnown RBP14.06□□□□□ -0.16
LIG1-213ENST00000596672 CFAP53Q96M91 514 aa14.06□□□□□ -0.16
LIG1-213ENST00000596672 NRXN2Q9P2S2 1712 aa14.06□□□□□ -0.16
LIG1-213ENST00000596672 ADCY9O60503 1353 aa14.06□□□□□ -0.16
LIG1-213ENST00000596672 PIP4K2AP48426 406 aaPredicted RBP14.05□□□□□ -0.16
LIG1-213ENST00000596672 NFIXQ14938 502 aa14.05□□□□□ -0.16
LIG1-213ENST00000596672 NARFQ9UHQ1 456 aa14.05□□□□□ -0.16
LIG1-213ENST00000596672 USP16Q9Y5T5 823 aa14.05□□□□□ -0.16
LIG1-213ENST00000596672 COL15A1P39059 1388 aa14.05□□□□□ -0.16
LIG1-213ENST00000596672 CHRNA5P30532 468 aa14.04□□□□□ -0.16
LIG1-213ENST00000596672 TEFQ10587 303 aa14.04□□□□□ -0.16
LIG1-213ENST00000596672 MIS18AQ9NYP9 233 aa14.04□□□□□ -0.16
LIG1-213ENST00000596672 CEP350Q5VT06 3117 aa14.04□□□□□ -0.16
LIG1-213ENST00000596672 CARMIL3Q8ND23 1372 aa14.04□□□□□ -0.16
LIG1-213ENST00000596672 TGFB2P61812 414 aa14.03□□□□□ -0.16
LIG1-213ENST00000596672 DDX10Q13206 875 aaKnown RBP14.03□□□□□ -0.16
LIG1-213ENST00000596672 THUMPD2Q9BTF0 503 aaKnown RBP14.03□□□□□ -0.16
LIG1-213ENST00000596672 NUDCQ9Y266 331 aa14.03□□□□□ -0.16
LIG1-213ENST00000596672 PARP3Q9Y6F1 533 aa14.03□□□□□ -0.16
LIG1-213ENST00000596672 ATP10DQ9P241 1426 aa14.03□□□□□ -0.16
LIG1-213ENST00000596672 ANKRD31Q8N7Z5 1873 aa14.02□□□□□ -0.16
LIG1-213ENST00000596672 BTBD11A6QL63 1104 aa14.02□□□□□ -0.17
LIG1-213ENST00000596672 ARFGEF1Q9Y6D6 1849 aa14.01□□□□□ -0.17
LIG1-213ENST00000596672 NBPF26B4DH59 902 aa14.01□□□□□ -0.17
LIG1-213ENST00000596672 NBPF10Q6P3W6 841 aaKnown RBP14.01□□□□□ -0.17
LIG1-213ENST00000596672 TTC5Q8N0Z6 440 aa14.01□□□□□ -0.17
LIG1-213ENST00000596672 NBPF15Q8N660 670 aa14.01□□□□□ -0.17
LIG1-213ENST00000596672 TBC1D2BQ9UPU7 963 aa14.01□□□□□ -0.17
LIG1-213ENST00000596672 ZPR1O75312 459 aa14□□□□□ -0.17
LIG1-213ENST00000596672 TBC1D9BQ66K14 1250 aa14□□□□□ -0.17
LIG1-213ENST00000596672 CCDC24Q8N4L8 307 aa14□□□□□ -0.17
LIG1-213ENST00000596672 FMNL2Q96PY5 1086 aa14□□□□□ -0.17
LIG1-213ENST00000596672 BCS1LQ9Y276 419 aa14□□□□□ -0.17
LIG1-213ENST00000596672 SCN7AQ01118 1682 aa14□□□□□ -0.17
LIG1-213ENST00000596672 KDM3BQ7LBC6 1761 aa13.99□□□□□ -0.17
LIG1-213ENST00000596672 CAMTA2O94983 1202 aa13.99□□□□□ -0.17
LIG1-213ENST00000596672 PRELPP51888 382 aa13.99□□□□□ -0.17
LIG1-213ENST00000596672 SBF1O95248 1867 aa13.99□□□□□ -0.17
LIG1-213ENST00000596672 STARD3NLO95772 234 aa13.98□□□□□ -0.17
LIG1-213ENST00000596672 SERPINB2P05120 415 aa13.98□□□□□ -0.17
LIG1-213ENST00000596672 C1QTNF8P60827 252 aa13.98□□□□□ -0.17
LIG1-213ENST00000596672 BICDL1Q6ZP65 573 aa13.98□□□□□ -0.17
LIG1-213ENST00000596672 BCORQ6W2J9 1755 aa13.98□□□□□ -0.17
LIG1-213ENST00000596672 DLEC1Q9Y238 1755 aa13.98□□□□□ -0.17
LIG1-213ENST00000596672 HTATSF1O43719 755 aaKnown RBP13.97□□□□□ -0.17
LIG1-213ENST00000596672 IL6STP40189 918 aaPredicted RBP13.97□□□□□ -0.17
LIG1-213ENST00000596672 COL11A2P13942 1736 aaPredicted RBP13.97□□□□□ -0.17
LIG1-213ENST00000596672 TAF7Q15545 349 aaPredicted RBP13.96□□□□□ -0.17
LIG1-213ENST00000596672 NFE2L2Q16236 605 aa13.96□□□□□ -0.17
LIG1-213ENST00000596672 ZNF526Q8TF50 670 aaPredicted RBP13.96□□□□□ -0.17
LIG1-213ENST00000596672 ZEB1P37275 1124 aaPredicted RBP13.95□□□□□ -0.18
LIG1-213ENST00000596672 ARHGAP27Q6ZUM4 889 aa13.95□□□□□ -0.18
LIG1-213ENST00000596672 TEX13AQ9BXU3 409 aaPredicted RBP13.95□□□□□ -0.18
LIG1-213ENST00000596672 PIM2Q9P1W9 311 aa13.95□□□□□ -0.18
LIG1-213ENST00000596672 ZNF330Q9Y3S2 320 aaPredicted RBP13.95□□□□□ -0.18
LIG1-213ENST00000596672 SNRPA1P09661 255 aaKnown RBP13.94□□□□□ -0.18
LIG1-213ENST00000596672 PRR5LQ6MZQ0 368 aa13.94□□□□□ -0.18
LIG1-213ENST00000596672 RTF1Q92541 710 aaKnown RBP13.94□□□□□ -0.18
LIG1-213ENST00000596672 CCDC88AQ3V6T2 1871 aa13.93□□□□□ -0.18
LIG1-213ENST00000596672 KIF3CO14782 793 aa13.93□□□□□ -0.18
LIG1-213ENST00000596672 EIF4A1P60842 406 aaKnown RBP13.93□□□□□ -0.18
LIG1-213ENST00000596672 RALBP1Q15311 655 aa13.93□□□□□ -0.18
LIG1-213ENST00000596672 DALRD3Q5D0E6 543 aaKnown RBP13.93□□□□□ -0.18
LIG1-213ENST00000596672 LAMB4A4D0S4 1761 aa13.93□□□□□ -0.18
LIG1-213ENST00000596672 A0A087WZG4 1122 aa13.92□□□□□ -0.18
LIG1-213ENST00000596672 GIGYF1O75420 1035 aaPredicted RBP13.92□□□□□ -0.18
LIG1-213ENST00000596672 HLFQ16534 295 aa13.92□□□□□ -0.18
LIG1-213ENST00000596672 DZIP3Q86Y13 1208 aaKnown RBP13.92□□□□□ -0.18
LIG1-213ENST00000596672 SLX4Q8IY92 1834 aa13.92□□□□□ -0.18
LIG1-213ENST00000596672 RASSF7Q02833 373 aa13.91□□□□□ -0.18
LIG1-213ENST00000596672 C9orf131Q5VYM1 1079 aa13.91□□□□□ -0.18
LIG1-213ENST00000596672 CCDC146Q8IYE0 955 aa13.91□□□□□ -0.18
LIG1-213ENST00000596672 RRP7AQ9Y3A4 280 aaKnown RBP13.91□□□□□ -0.18
LIG1-213ENST00000596672 MYBBP1AQ9BQG0 1328 aaKnown RBP13.9□□□□□ -0.18
LIG1-213ENST00000596672 TMPOP42166 694 aaKnown RBP13.9□□□□□ -0.18
LIG1-213ENST00000596672 TTLL7Q6ZT98 887 aa13.9□□□□□ -0.18
LIG1-213ENST00000596672 LRP10Q7Z4F1 713 aa13.9□□□□□ -0.18
LIG1-213ENST00000596672 C2CD5Q86YS7 1000 aa13.9□□□□□ -0.18
LIG1-213ENST00000596672 GPBP1L1Q9HC44 474 aaPredicted RBP13.9□□□□□ -0.18
LIG1-213ENST00000596672 NUP98P52948 1817 aa13.9□□□□□ -0.18
LIG1-213ENST00000596672 CACNA1SQ13698 1873 aa13.89□□□□□ -0.19
LIG1-213ENST00000596672 NFKBIEO00221 500 aa13.89□□□□□ -0.19
LIG1-213ENST00000596672 PDIA6Q15084 440 aa13.89□□□□□ -0.19
LIG1-213ENST00000596672 CCDC184Q52MB2 194 aa13.89□□□□□ -0.19
LIG1-213ENST00000596672 PRKRIP1Q9H875 184 aaPredicted RBP13.89□□□□□ -0.19
LIG1-213ENST00000596672 NMRK2Q9NPI5 230 aa13.89□□□□□ -0.19
LIG1-213ENST00000596672 ADAMTS8Q9UP79 889 aa13.89□□□□□ -0.19
LIG1-213ENST00000596672 TRIM35Q9UPQ4 493 aa13.89□□□□□ -0.19
LIG1-213ENST00000596672 RIPK4P57078 832 aa13.88□□□□□ -0.19
LIG1-213ENST00000596672 KRT24Q2M2I5 525 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms