RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 ACSBG1Q96GR2 724 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 SLC5A4Q9NY91 659 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 MYOM2P54296 1465 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 ALDH1L1O75891 902 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 HOXC9P31274 260 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 PABPC4Q13310 644 aaKnown RBP eCLIP7.56□□□□□ -1.2
SMAD4-212ENST00000591126 SYAP1Q96A49 352 aaPredicted RBP7.56□□□□□ -1.2
SMAD4-212ENST00000591126 RNF41Q9H4P4 317 aaPredicted RBP7.56□□□□□ -1.2
SMAD4-212ENST00000591126 PLEKHH1Q9ULM0 1364 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 SBNO2Q9Y2G9 1366 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 VPS72Q15906 364 aa7.56□□□□□ -1.2
SMAD4-212ENST00000591126 NIP7Q9Y221 180 aaKnown RBP eCLIP7.56□□□□□ -1.2
SMAD4-212ENST00000591126 MAP3K5Q99683 1374 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 ATP7BP35670 1465 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 ZMYM4Q5VZL5 1548 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 SURF6O75683 361 aaKnown RBP7.55□□□□□ -1.2
SMAD4-212ENST00000591126 MIER1Q8N108 512 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 SPATA31A3Q5VYP0 1347 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 ZBED9Q6R2W3 1325 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 MAP3K4Q9Y6R4 1608 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 DUSP27Q5VZP5 1158 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 TNPO1Q92973 898 aaKnown RBP7.55□□□□□ -1.2
SMAD4-212ENST00000591126 GJD4Q96KN9 370 aaPredicted RBP7.55□□□□□ -1.2
SMAD4-212ENST00000591126 CEP89Q96ST8 783 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 TMPOP42166 694 aaKnown RBP7.55□□□□□ -1.2
SMAD4-212ENST00000591126 WDR17Q8IZU2 1322 aa7.55□□□□□ -1.2
SMAD4-212ENST00000591126 USP5P45974 858 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 BRINP3Q76B58 766 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 ZC3H13Q5T200 1668 aaKnown RBP7.54□□□□□ -1.2
SMAD4-212ENST00000591126 DNAAF4Q8WXU2 420 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 RILPL2Q969X0 211 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 GLRX3O76003 335 aaKnown RBP7.54□□□□□ -1.2
SMAD4-212ENST00000591126 BRDTQ58F21 947 aaPredicted RBP7.54□□□□□ -1.2
SMAD4-212ENST00000591126 INTS3Q68E01 1043 aaKnown RBP7.54□□□□□ -1.2
SMAD4-212ENST00000591126 ANKRD13DQ6ZTN6 518 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 ADGRB3O60242 1522 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 POLR3DP05423 398 aaPredicted RBP7.54□□□□□ -1.2
SMAD4-212ENST00000591126 DIP2AQ14689 1571 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 CENPQQ7L2Z9 268 aaPredicted RBP7.54□□□□□ -1.2
SMAD4-212ENST00000591126 FSD1Q9BTV5 496 aa7.54□□□□□ -1.2
SMAD4-212ENST00000591126 PTCH1Q13635 1447 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 PDE3AQ14432 1141 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 TBC1D22AQ8WUA7 517 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 PPP4R3AQ6IN85 833 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 CUL5Q93034 780 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 LMTK2Q8IWU2 1503 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 TET3O43151 1660 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 CDKL5O76039 1030 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 RGS3P49796 1198 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 SF3A1Q15459 793 aaKnown RBP7.53□□□□□ -1.2
SMAD4-212ENST00000591126 ANKRD45Q5TZF3 282 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 CABLES1Q8TDN4 633 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 TNS3Q68CZ2 1445 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 H3BQV1 296 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 KRT32Q14532 448 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 IFFO2Q5TF58 517 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 RTKN2Q8IZC4 609 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 WASF1Q92558 559 aa7.53□□□□□ -1.2
SMAD4-212ENST00000591126 MYD88Q99836 296 aa7.52□□□□□ -1.2
SMAD4-212ENST00000591126 LRRFIP2Q9Y608 721 aaKnown RBP7.52□□□□□ -1.2
SMAD4-212ENST00000591126 NPC1L1Q9UHC9 1359 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 TMEM87AQ8NBN3 555 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 KDM2BQ8NHM5 1336 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 IQCA1LA6NCM1 817 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 HSPA1LP34931 641 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 DCAF15Q66K64 600 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 TRIM22Q8IYM9 498 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 LARGE2Q8N3Y3 721 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 FEZ1Q99689 392 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 RSPH6AQ9H0K4 717 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 EMILIN1Q9Y6C2 1016 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 ERCC6L2Q5T890 1561 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 FYB1O15117 783 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 ANKRD1Q15327 319 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 NFATC2IPQ8NCF5 419 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 ANKRD20A12PQ8NF67 263 aa7.52□□□□□ -1.21
SMAD4-212ENST00000591126 RNMTO43148 476 aaKnown RBP7.51□□□□□ -1.21
SMAD4-212ENST00000591126 ZNF444Q8N0Y2 327 aaPredicted RBP7.51□□□□□ -1.21
SMAD4-212ENST00000591126 CLUAP1Q96AJ1 413 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 RNF123Q5XPI4 1314 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 KIF1BPQ96EK5 621 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 CCDC196A0A1B0GTZ2 297 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 ARHGAP27Q6ZUM4 889 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 CRNKL1Q9BZJ0 848 aaKnown RBP7.51□□□□□ -1.21
SMAD4-212ENST00000591126 SETD1BQ9UPS6 1966 aaKnown RBP7.51□□□□□ -1.21
SMAD4-212ENST00000591126 SH3TC1Q8TE82 1336 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 ZFYP08048 801 aaPredicted RBP7.51□□□□□ -1.21
SMAD4-212ENST00000591126 TXLNAP40222 546 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 DALRD3Q5D0E6 543 aaKnown RBP7.51□□□□□ -1.21
SMAD4-212ENST00000591126 LDHAL6AQ6ZMR3 332 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 CCDC12Q8WUD4 166 aaPredicted RBP7.51□□□□□ -1.21
SMAD4-212ENST00000591126 GGA1Q9UJY5 639 aa7.51□□□□□ -1.21
SMAD4-212ENST00000591126 INSRP06213 1382 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 MMP14P50281 582 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 PDE4BQ07343 736 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 TMED8Q6PL24 325 aaPredicted RBP7.5□□□□□ -1.21
SMAD4-212ENST00000591126 DCPSQ96C86 337 aaKnown RBP7.5□□□□□ -1.21
SMAD4-212ENST00000591126 ASXL1Q8IXJ9 1541 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 TDO2P48775 406 aa7.5□□□□□ -1.21
SMAD4-212ENST00000591126 DPP8Q6V1X1 898 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 171.3 ms