RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 EIF4A1P60842 406 aaKnown RBP27.8■■■□□ 2.04
ATG4D-212ENST00000590096 SLC16A10Q8TF71 515 aa27.8■■■□□ 2.04
ATG4D-212ENST00000590096 AMIGO3Q86WK7 504 aa27.79■■■□□ 2.04
ATG4D-212ENST00000590096 CFAP44Q96MT7 982 aa27.79■■■□□ 2.04
ATG4D-212ENST00000590096 CHL1O00533 1208 aa27.78■■■□□ 2.04
ATG4D-212ENST00000590096 TRAPPC3LQ5T215 181 aa27.78■■■□□ 2.04
ATG4D-212ENST00000590096 INTS5Q6P9B9 1019 aaKnown RBP27.78■■■□□ 2.04
ATG4D-212ENST00000590096 MTFR1LQ9H019 292 aa27.78■■■□□ 2.04
ATG4D-212ENST00000590096 SPON1Q9HCB6 807 aa27.78■■■□□ 2.04
ATG4D-212ENST00000590096 SALL2Q9Y467 1007 aaPredicted RBP27.78■■■□□ 2.04
ATG4D-212ENST00000590096 ADRA2BP18089 450 aa27.77■■■□□ 2.04
ATG4D-212ENST00000590096 SMIM5Q71RC9 77 aa27.77■■■□□ 2.04
ATG4D-212ENST00000590096 WWC1Q8IX03 1113 aa27.77■■■□□ 2.04
ATG4D-212ENST00000590096 NGEFQ8N5V2 710 aa27.77■■■□□ 2.04
ATG4D-212ENST00000590096 IFT57Q9NWB7 429 aa27.77■■■□□ 2.04
ATG4D-212ENST00000590096 GNAI1P63096 354 aa27.76■■■□□ 2.03
ATG4D-212ENST00000590096 ZBTB1Q9Y2K1 713 aa27.76■■■□□ 2.03
ATG4D-212ENST00000590096 PRAMEF22A3QJZ6 481 aa27.75■■■□□ 2.03
ATG4D-212ENST00000590096 ATF5Q9Y2D1 282 aaPredicted RBP27.75■■■□□ 2.03
ATG4D-212ENST00000590096 LAMB4A4D0S4 1761 aa27.74■■■□□ 2.03
ATG4D-212ENST00000590096 GIGYF1O75420 1035 aaPredicted RBP27.74■■■□□ 2.03
ATG4D-212ENST00000590096 USP16Q9Y5T5 823 aa27.74■■■□□ 2.03
ATG4D-212ENST00000590096 ZNF853P0CG23 659 aa27.73■■■□□ 2.03
ATG4D-212ENST00000590096 CANXP27824 592 aaKnown RBP27.73■■■□□ 2.03
ATG4D-212ENST00000590096 SOS1Q07889 1333 aaPredicted RBP27.72■■■□□ 2.03
ATG4D-212ENST00000590096 RFC4P35249 363 aa27.72■■■□□ 2.03
ATG4D-212ENST00000590096 ARHGEF1Q92888 912 aaKnown RBP27.72■■■□□ 2.03
ATG4D-212ENST00000590096 MBIPQ9NS73 344 aa27.72■■■□□ 2.03
ATG4D-212ENST00000590096 A1BGP04217 495 aa27.7■■■□□ 2.02
ATG4D-212ENST00000590096 NPM2Q86SE8 214 aaKnown RBP27.7■■■□□ 2.02
ATG4D-212ENST00000590096 COL15A1P39059 1388 aa27.7■■■□□ 2.02
ATG4D-212ENST00000590096 C4AP0C0L4 1744 aa27.7■■■□□ 2.02
ATG4D-212ENST00000590096 IL16Q14005 1332 aa27.69■■■□□ 2.02
ATG4D-212ENST00000590096 WDR63Q8IWG1 891 aa27.68■■■□□ 2.02
ATG4D-212ENST00000590096 ZNF330Q9Y3S2 320 aaPredicted RBP27.68■■■□□ 2.02
ATG4D-212ENST00000590096 POLD1P28340 1107 aa27.67■■■□□ 2.02
ATG4D-212ENST00000590096 IL6STP40189 918 aaPredicted RBP27.67■■■□□ 2.02
ATG4D-212ENST00000590096 MSL1Q68DK7 614 aa27.67■■■□□ 2.02
ATG4D-212ENST00000590096 A0A087WZG4 1122 aa27.66■■■□□ 2.02
ATG4D-212ENST00000590096 EIF5P55010 431 aaKnown RBP27.66■■■□□ 2.02
ATG4D-212ENST00000590096 ZPR1O75312 459 aa27.65■■■□□ 2.02
ATG4D-212ENST00000590096 PPP1R1BQ9UD71 204 aaPredicted RBP27.65■■■□□ 2.02
ATG4D-212ENST00000590096 COL24A1Q17RW2 1714 aa27.64■■■□□ 2.02
ATG4D-212ENST00000590096 EIF2S2P20042 333 aaKnown RBP27.64■■■□□ 2.02
ATG4D-212ENST00000590096 PTGER2P43116 358 aa27.64■■■□□ 2.02
ATG4D-212ENST00000590096 PIP4K2AP48426 406 aaPredicted RBP27.64■■■□□ 2.02
ATG4D-212ENST00000590096 KRT24Q2M2I5 525 aa27.64■■■□□ 2.02
ATG4D-212ENST00000590096 USP42Q9H9J4 1324 aaKnown RBP27.63■■■□□ 2.01
ATG4D-212ENST00000590096 HOXB7P09629 217 aa27.62■■■□□ 2.01
ATG4D-212ENST00000590096 TSR2Q969E8 191 aaKnown RBP27.62■■■□□ 2.01
ATG4D-212ENST00000590096 SGIP1Q9BQI5 828 aa27.62■■■□□ 2.01
ATG4D-212ENST00000590096 SRP68Q9UHB9 627 aaKnown RBP27.62■■■□□ 2.01
ATG4D-212ENST00000590096 NLGN1Q8N2Q7 840 aa27.61■■■□□ 2.01
ATG4D-212ENST00000590096 ARXQ96QS3 562 aa27.61■■■□□ 2.01
ATG4D-212ENST00000590096 NARFQ9UHQ1 456 aa27.61■■■□□ 2.01
ATG4D-212ENST00000590096 ERBB4Q15303 1308 aa27.61■■■□□ 2.01
ATG4D-212ENST00000590096 NBPF26B4DH59 902 aa27.6■■■□□ 2.01
ATG4D-212ENST00000590096 GYS1P13807 737 aa27.6■■■□□ 2.01
ATG4D-212ENST00000590096 DUSP27Q5VZP5 1158 aa27.6■■■□□ 2.01
ATG4D-212ENST00000590096 NBPF10Q6P3W6 841 aaKnown RBP27.6■■■□□ 2.01
ATG4D-212ENST00000590096 NBPF15Q8N660 670 aa27.6■■■□□ 2.01
ATG4D-212ENST00000590096 USPL1Q5W0Q7 1092 aa27.59■■■□□ 2.01
ATG4D-212ENST00000590096 HDGFL1Q5TGJ6 251 aa27.57■■■□□ 2
ATG4D-212ENST00000590096 NECTIN2Q92692 538 aa27.57■■■□□ 2
ATG4D-212ENST00000590096 MYH16Q9H6N6 1097 aa27.57■■■□□ 2
ATG4D-212ENST00000590096 TBC1D2BQ9UPU7 963 aa27.57■■■□□ 2
ATG4D-212ENST00000590096 ZNF521Q96K83 1311 aa27.57■■■□□ 2
ATG4D-212ENST00000590096 MYL6BP14649 208 aa27.56■■■□□ 2
ATG4D-212ENST00000590096 DZIP3Q86Y13 1208 aaKnown RBP27.56■■■□□ 2
ATG4D-212ENST00000590096 FANCIQ9NVI1 1328 aa27.56■■■□□ 2
ATG4D-212ENST00000590096 ELL2O00472 640 aaPredicted RBP27.55■■■□□ 2
ATG4D-212ENST00000590096 C8orf58Q8NAV2 365 aa27.55■■■□□ 2
ATG4D-212ENST00000590096 SCN7AQ01118 1682 aa27.54■■■□□ 2
ATG4D-212ENST00000590096 GOLGA2Q08379 1002 aa27.54■■■□□ 2
ATG4D-212ENST00000590096 FKBP8Q14318 412 aa27.54■■■□□ 2
ATG4D-212ENST00000590096 CHMP4AQ9BY43 222 aa27.54■■■□□ 2
ATG4D-212ENST00000590096 MMP10P09238 476 aa27.53■■■□□ 2
ATG4D-212ENST00000590096 SPINK5Q9NQ38 1064 aaPredicted RBP27.52■■■□□ 2
ATG4D-212ENST00000590096 BCORQ6W2J9 1755 aa27.51■■□□□ 1.99
ATG4D-212ENST00000590096 CAMTA2O94983 1202 aa27.51■■□□□ 1.99
ATG4D-212ENST00000590096 PDIA6Q15084 440 aa27.51■■□□□ 1.99
ATG4D-212ENST00000590096 TWISTNBQ3B726 338 aaPredicted RBP27.5■■□□□ 1.99
ATG4D-212ENST00000590096 KIF6Q6ZMV9 814 aa27.5■■□□□ 1.99
ATG4D-212ENST00000590096 KLHL34Q8N239 644 aa27.5■■□□□ 1.99
ATG4D-212ENST00000590096 TSPYL6Q8N831 410 aa27.5■■□□□ 1.99
ATG4D-212ENST00000590096 BCL2L12Q9HB09 334 aa27.5■■□□□ 1.99
ATG4D-212ENST00000590096 DDX21Q9NR30 783 aaKnown RBP eCLIP27.5■■□□□ 1.99
ATG4D-212ENST00000590096 CHPF2Q9P2E5 772 aa27.5■■□□□ 1.99
ATG4D-212ENST00000590096 PARP3Q9Y6F1 533 aa27.5■■□□□ 1.99
ATG4D-212ENST00000590096 E9PSI1 815 aa27.49■■□□□ 1.99
ATG4D-212ENST00000590096 ANXA1P04083 346 aa27.49■■□□□ 1.99
ATG4D-212ENST00000590096 PROSER3Q2NL68 480 aa27.49■■□□□ 1.99
ATG4D-212ENST00000590096 DBF4Q9UBU7 674 aaPredicted RBP27.49■■□□□ 1.99
ATG4D-212ENST00000590096 ZNF652Q9Y2D9 606 aa27.49■■□□□ 1.99
ATG4D-212ENST00000590096 HNRNPUQ00839 825 aaKnown RBP eCLIP27.47■■□□□ 1.99
ATG4D-212ENST00000590096 EXOSC9Q06265 439 aaKnown RBP27.47■■□□□ 1.99
ATG4D-212ENST00000590096 CCDC30Q5VVM6 783 aa27.47■■□□□ 1.99
ATG4D-212ENST00000590096 FHDC1Q9C0D6 1143 aaPredicted RBP27.47■■□□□ 1.99
ATG4D-212ENST00000590096 CLEC4GQ6UXB4 293 aa27.46■■□□□ 1.99
ATG4D-212ENST00000590096 TTLL7Q6ZT98 887 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms