RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 SYTL4Q96C24 671 aaPredicted RBP28.38■■■□□ 2.13
ATG4D-209ENST00000588857 TNNQ9UQP3 1299 aa28.37■■■□□ 2.13
ATG4D-209ENST00000588857 BCL9O00512 1426 aa28.37■■■□□ 2.13
ATG4D-209ENST00000588857 SNRPA1P09661 255 aaKnown RBP28.37■■■□□ 2.13
ATG4D-209ENST00000588857 EN1Q05925 392 aaPredicted RBP28.37■■■□□ 2.13
ATG4D-209ENST00000588857 API5Q9BZZ5 524 aaKnown RBP28.37■■■□□ 2.13
ATG4D-209ENST00000588857 PRIM1P49642 420 aaKnown RBP28.36■■■□□ 2.13
ATG4D-209ENST00000588857 PTPRCP08575 1304 aa28.35■■■□□ 2.13
ATG4D-209ENST00000588857 APBA3O96018 575 aa28.35■■■□□ 2.13
ATG4D-209ENST00000588857 RLBP1P12271 317 aa28.35■■■□□ 2.13
ATG4D-209ENST00000588857 COG6Q9Y2V7 657 aa28.35■■■□□ 2.13
ATG4D-209ENST00000588857 KCPQ6ZWJ8 1503 aa28.34■■■□□ 2.13
ATG4D-209ENST00000588857 LAMB4A4D0S4 1761 aa28.34■■■□□ 2.13
ATG4D-209ENST00000588857 PRAMEF22A3QJZ6 481 aa28.33■■■□□ 2.13
ATG4D-209ENST00000588857 ACSBG1Q96GR2 724 aa28.32■■■□□ 2.12
ATG4D-209ENST00000588857 ATG3Q9NT62 314 aa28.32■■■□□ 2.12
ATG4D-209ENST00000588857 CHPF2Q9P2E5 772 aa28.32■■■□□ 2.12
ATG4D-209ENST00000588857 DBF4Q9UBU7 674 aaPredicted RBP28.32■■■□□ 2.12
ATG4D-209ENST00000588857 ASAP1Q9ULH1 1129 aa28.32■■■□□ 2.12
ATG4D-209ENST00000588857 PTCD1O75127 700 aaKnown RBP28.31■■■□□ 2.12
ATG4D-209ENST00000588857 MVPQ14764 893 aaKnown RBP28.3■■■□□ 2.12
ATG4D-209ENST00000588857 G2E3Q7L622 706 aa28.3■■■□□ 2.12
ATG4D-209ENST00000588857 CAMKK2Q96RR4 588 aa28.3■■■□□ 2.12
ATG4D-209ENST00000588857 FLIIQ13045 1269 aa28.28■■■□□ 2.12
ATG4D-209ENST00000588857 EZH2Q15910 746 aaKnown RBP28.28■■■□□ 2.12
ATG4D-209ENST00000588857 BCL11BQ9C0K0 894 aaPredicted RBP28.28■■■□□ 2.12
ATG4D-209ENST00000588857 ABCC4O15439 1325 aa28.28■■■□□ 2.12
ATG4D-209ENST00000588857 ITPRIPQ8IWB1 547 aa28.28■■■□□ 2.12
ATG4D-209ENST00000588857 TMEM57Q8N5G2 664 aa28.27■■■□□ 2.12
ATG4D-209ENST00000588857 FKBP5Q13451 457 aaPredicted RBP28.26■■■□□ 2.11
ATG4D-209ENST00000588857 USP16Q9Y5T5 823 aa28.26■■■□□ 2.11
ATG4D-209ENST00000588857 TNS1Q9HBL0 1735 aaKnown RBP28.25■■■□□ 2.11
ATG4D-209ENST00000588857 PTF1AQ7RTS3 328 aa28.25■■■□□ 2.11
ATG4D-209ENST00000588857 CCDC136Q96JN2 1154 aa28.25■■■□□ 2.11
ATG4D-209ENST00000588857 DDX21Q9NR30 783 aaKnown RBP eCLIP28.25■■■□□ 2.11
ATG4D-209ENST00000588857 HYPKQ9NX55 129 aa28.25■■■□□ 2.11
ATG4D-209ENST00000588857 DDX19BQ9UMR2 479 aa28.25■■■□□ 2.11
ATG4D-209ENST00000588857 AAMPQ13685 434 aa28.24■■■□□ 2.11
ATG4D-209ENST00000588857 VSIG10Q8N0Z9 540 aa28.24■■■□□ 2.11
ATG4D-209ENST00000588857 RBM42Q9BTD8 480 aaKnown RBP28.24■■■□□ 2.11
ATG4D-209ENST00000588857 PHAXQ9H814 394 aaKnown RBP28.24■■■□□ 2.11
ATG4D-209ENST00000588857 B4GALNT3Q6L9W6 998 aa28.23■■■□□ 2.11
ATG4D-209ENST00000588857 TEX13AQ9BXU3 409 aaPredicted RBP28.23■■■□□ 2.11
ATG4D-209ENST00000588857 ANXA1P04083 346 aa28.22■■■□□ 2.11
ATG4D-209ENST00000588857 PLSCR1O15162 318 aa28.21■■■□□ 2.11
ATG4D-209ENST00000588857 KCNQ2O43526 872 aa28.21■■■□□ 2.11
ATG4D-209ENST00000588857 SBF2Q86WG5 1849 aa28.2■■■□□ 2.11
ATG4D-209ENST00000588857 PROSER3Q2NL68 480 aa28.2■■■□□ 2.11
ATG4D-209ENST00000588857 NHSQ6T4R5 1651 aa28.2■■■□□ 2.11
ATG4D-209ENST00000588857 ERBB4Q15303 1308 aa28.2■■■□□ 2.1
ATG4D-209ENST00000588857 PDIA6Q15084 440 aa28.2■■■□□ 2.1
ATG4D-209ENST00000588857 CHMP4BQ9H444 224 aaKnown RBP28.2■■■□□ 2.1
ATG4D-209ENST00000588857 INTS3Q68E01 1043 aaKnown RBP28.19■■■□□ 2.1
ATG4D-209ENST00000588857 SMARCC1Q92922 1105 aaPredicted RBP28.19■■■□□ 2.1
ATG4D-209ENST00000588857 MYL6BP14649 208 aa28.18■■■□□ 2.1
ATG4D-209ENST00000588857 F6X3S4 739 aa28.17■■■□□ 2.1
ATG4D-209ENST00000588857 SLC4A10Q6U841 1118 aa28.17■■■□□ 2.1
ATG4D-209ENST00000588857 STARD3NLO95772 234 aa28.16■■■□□ 2.1
ATG4D-209ENST00000588857 BTAF1O14981 1849 aa28.16■■■□□ 2.1
ATG4D-209ENST00000588857 N4BP2Q86UW6 1770 aaPredicted RBP28.16■■■□□ 2.1
ATG4D-209ENST00000588857 CCT4P50991 539 aaKnown RBP28.16■■■□□ 2.1
ATG4D-209ENST00000588857 DNAJC10Q8IXB1 793 aa28.16■■■□□ 2.1
ATG4D-209ENST00000588857 DDX58O95786 925 aaKnown RBP28.15■■■□□ 2.1
ATG4D-209ENST00000588857 PALLDQ8WX93 1383 aa28.14■■■□□ 2.1
ATG4D-209ENST00000588857 TJP1Q07157 1748 aa28.14■■■□□ 2.1
ATG4D-209ENST00000588857 PXDNLA1KZ92 1463 aa28.14■■■□□ 2.09
ATG4D-209ENST00000588857 PI4KAP2A4QPH2 592 aa28.12■■■□□ 2.09
ATG4D-209ENST00000588857 A1BGP04217 495 aa28.12■■■□□ 2.09
ATG4D-209ENST00000588857 PIP4K2AP48426 406 aaPredicted RBP28.12■■■□□ 2.09
ATG4D-209ENST00000588857 AIMP1Q12904 312 aaKnown RBP28.12■■■□□ 2.09
ATG4D-209ENST00000588857 PI4KAP1Q8N8J0 262 aa28.12■■■□□ 2.09
ATG4D-209ENST00000588857 SLC4A9Q96Q91 983 aa28.12■■■□□ 2.09
ATG4D-209ENST00000588857 ZBTB7BO15156 539 aaPredicted RBP28.11■■■□□ 2.09
ATG4D-209ENST00000588857 LOC102724428A0A0B4J2F2 783 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 NBPF26B4DH59 902 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 SIK1P57059 783 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 NBPF14Q5TI25 921 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 NBPF10Q6P3W6 841 aaKnown RBP28.11■■■□□ 2.09
ATG4D-209ENST00000588857 KSR2Q6VAB6 950 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 COPS6Q7L5N1 327 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 NBPF15Q8N660 670 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 XAGE3Q8WTP9 111 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 DNAAF4Q8WXU2 420 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 ZBTB40Q9NUA8 1239 aa28.11■■■□□ 2.09
ATG4D-209ENST00000588857 PROM2Q8N271 834 aa28.1■■■□□ 2.09
ATG4D-209ENST00000588857 ADCY9O60503 1353 aa28.1■■■□□ 2.09
ATG4D-209ENST00000588857 ZNF831Q5JPB2 1677 aa28.09■■■□□ 2.09
ATG4D-209ENST00000588857 PSDA5PKW4 1024 aaPredicted RBP28.09■■■□□ 2.09
ATG4D-209ENST00000588857 ATP6V1AP38606 617 aa28.09■■■□□ 2.09
ATG4D-209ENST00000588857 LRP10Q7Z4F1 713 aa28.09■■■□□ 2.09
ATG4D-209ENST00000588857 CICQ96RK0 1608 aaPredicted RBP28.09■■■□□ 2.09
ATG4D-209ENST00000588857 CYP19A1P11511 503 aaPredicted RBP28.08■■■□□ 2.09
ATG4D-209ENST00000588857 MAP3K2Q9Y2U5 619 aa28.08■■■□□ 2.09
ATG4D-209ENST00000588857 R3HDM1Q15032 1099 aaKnown RBP28.07■■■□□ 2.08
ATG4D-209ENST00000588857 RIC3Q7Z5B4 369 aa28.07■■■□□ 2.08
ATG4D-209ENST00000588857 TXNRD1Q16881 649 aa28.05■■■□□ 2.08
ATG4D-209ENST00000588857 ANKRD13DQ6ZTN6 518 aa28.05■■■□□ 2.08
ATG4D-209ENST00000588857 SRCIN1Q9C0H9 1055 aa28.05■■■□□ 2.08
ATG4D-209ENST00000588857 PCDHB15Q9Y5E8 787 aa28.04■■■□□ 2.08
ATG4D-209ENST00000588857 SRCAPQ6ZRS2 3230 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms