RNA–Protein interactions for RNA: ENST00000587201.5

TPM4-206, Transcript of tropomyosin 4, humanhuman

TSL 2

Gene TPM4, Length 877 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-206ENST00000587201 YBX3P16989 372 aaKnown RBP eCLIP23.47■■□□□ 1.35
TPM4-206ENST00000587201 CANXP27824 592 aaKnown RBP23.47■■□□□ 1.35
TPM4-206ENST00000587201 FKBP8Q14318 412 aa23.47■■□□□ 1.35
TPM4-206ENST00000587201 PLEKHF1Q96S99 279 aa23.47■■□□□ 1.35
TPM4-206ENST00000587201 MYBBP1AQ9BQG0 1328 aaKnown RBP23.47■■□□□ 1.35
TPM4-206ENST00000587201 GRIN3BO60391 1043 aa23.46■■□□□ 1.35
TPM4-206ENST00000587201 COL15A1P39059 1388 aa23.46■■□□□ 1.35
TPM4-206ENST00000587201 USPL1Q5W0Q7 1092 aa23.46■■□□□ 1.35
TPM4-206ENST00000587201 MAPK8IP3Q9UPT6 1336 aa23.45■■□□□ 1.34
TPM4-206ENST00000587201 NFE2L2Q16236 605 aa23.43■■□□□ 1.34
TPM4-206ENST00000587201 NARFQ9UHQ1 456 aa23.43■■□□□ 1.34
TPM4-206ENST00000587201 WWC3Q9ULE0 1092 aa23.43■■□□□ 1.34
TPM4-206ENST00000587201 CHD4Q14839 1912 aa23.42■■□□□ 1.34
TPM4-206ENST00000587201 TAF7Q15545 349 aaPredicted RBP23.41■■□□□ 1.34
TPM4-206ENST00000587201 C10orf71Q711Q0 1435 aa23.41■■□□□ 1.34
TPM4-206ENST00000587201 GOLGB1Q14789 3259 aaKnown RBP23.41■■□□□ 1.34
TPM4-206ENST00000587201 A0A087WZG4 1122 aa23.4■■□□□ 1.34
TPM4-206ENST00000587201 EIF5P55010 431 aaKnown RBP23.4■■□□□ 1.34
TPM4-206ENST00000587201 TGFB2P61812 414 aa23.4■■□□□ 1.34
TPM4-206ENST00000587201 DDR1Q08345 913 aa23.4■■□□□ 1.34
TPM4-206ENST00000587201 ZNF330Q9Y3S2 320 aaPredicted RBP23.4■■□□□ 1.34
TPM4-206ENST00000587201 A1BGP04217 495 aa23.39■■□□□ 1.33
TPM4-206ENST00000587201 TM4SF1P30408 202 aa23.39■■□□□ 1.33
TPM4-206ENST00000587201 PXDNLA1KZ92 1463 aa23.38■■□□□ 1.33
TPM4-206ENST00000587201 SNRPA1P09661 255 aaKnown RBP23.38■■□□□ 1.33
TPM4-206ENST00000587201 NPM2Q86SE8 214 aaKnown RBP23.38■■□□□ 1.33
TPM4-206ENST00000587201 MIS18AQ9NYP9 233 aa23.38■■□□□ 1.33
TPM4-206ENST00000587201 USP16Q9Y5T5 823 aa23.38■■□□□ 1.33
TPM4-206ENST00000587201 KIF13BQ9NQT8 1826 aa23.38■■□□□ 1.33
TPM4-206ENST00000587201 DLG5Q8TDM6 1919 aa23.37■■□□□ 1.33
TPM4-206ENST00000587201 A0A0G2JLW4 131 aa23.37■■□□□ 1.33
TPM4-206ENST00000587201 POLRMTO00411 1230 aaKnown RBP23.37■■□□□ 1.33
TPM4-206ENST00000587201 IL6STP40189 918 aaPredicted RBP23.37■■□□□ 1.33
TPM4-206ENST00000587201 PRKRIP1Q9H875 184 aaPredicted RBP23.37■■□□□ 1.33
TPM4-206ENST00000587201 BCL2L12Q9HB09 334 aa23.37■■□□□ 1.33
TPM4-206ENST00000587201 PRAMEF22A3QJZ6 481 aa23.36■■□□□ 1.33
TPM4-206ENST00000587201 ZNF784Q8NCA9 323 aaPredicted RBP23.36■■□□□ 1.33
TPM4-206ENST00000587201 PNISRQ8TF01 805 aaKnown RBP23.36■■□□□ 1.33
TPM4-206ENST00000587201 NFIXQ14938 502 aa23.35■■□□□ 1.33
TPM4-206ENST00000587201 WDR43Q15061 677 aaKnown RBP eCLIP23.35■■□□□ 1.331e-6■□□□□ 11.1
TPM4-206ENST00000587201 THUMPD2Q9BTF0 503 aaKnown RBP23.35■■□□□ 1.33
TPM4-206ENST00000587201 DPEP1P16444 411 aa23.34■■□□□ 1.33
TPM4-206ENST00000587201 TBC1D2BQ9UPU7 963 aa23.34■■□□□ 1.33
TPM4-206ENST00000587201 N4BP2Q86UW6 1770 aaPredicted RBP23.33■■□□□ 1.33
TPM4-206ENST00000587201 RIPK4P57078 832 aa23.33■■□□□ 1.33
TPM4-206ENST00000587201 PIP4K2AP48426 406 aaPredicted RBP23.32■■□□□ 1.32
TPM4-206ENST00000587201 BICDL1Q6ZP65 573 aa23.32■■□□□ 1.32
TPM4-206ENST00000587201 BCS1LQ9Y276 419 aa23.32■■□□□ 1.32
TPM4-206ENST00000587201 KIAA1551Q9HCM1 1747 aa23.32■■□□□ 1.32
TPM4-206ENST00000587201 SERPINB2P05120 415 aa23.31■■□□□ 1.32
TPM4-206ENST00000587201 CCDC146Q8IYE0 955 aa23.31■■□□□ 1.32
TPM4-206ENST00000587201 TMPOP42166 694 aaKnown RBP23.3■■□□□ 1.32
TPM4-206ENST00000587201 DZIP3Q86Y13 1208 aaKnown RBP23.3■■□□□ 1.32
TPM4-206ENST00000587201 LMOD3Q0VAK6 560 aa23.29■■□□□ 1.32
TPM4-206ENST00000587201 TBC1D9BQ66K14 1250 aa23.29■■□□□ 1.32
TPM4-206ENST00000587201 RUNDC1Q96C34 613 aa23.28■■□□□ 1.32
TPM4-206ENST00000587201 PIM2Q9P1W9 311 aa23.28■■□□□ 1.32
TPM4-206ENST00000587201 RRP7AQ9Y3A4 280 aaKnown RBP23.28■■□□□ 1.32
TPM4-206ENST00000587201 KDM3BQ7LBC6 1761 aa23.27■■□□□ 1.32
TPM4-206ENST00000587201 CAMTA2O94983 1202 aa23.27■■□□□ 1.32
TPM4-206ENST00000587201 KCNA3P22001 575 aa23.27■■□□□ 1.32
TPM4-206ENST00000587201 CHRNA5P30532 468 aa23.27■■□□□ 1.32
TPM4-206ENST00000587201 EIF4A1P60842 406 aaKnown RBP23.27■■□□□ 1.32
TPM4-206ENST00000587201 NEUROD2Q15784 382 aa23.27■■□□□ 1.32
TPM4-206ENST00000587201 ADAMTS8Q9UP79 889 aa23.27■■□□□ 1.32
TPM4-206ENST00000587201 SCN7AQ01118 1682 aa23.27■■□□□ 1.32
TPM4-206ENST00000587201 TSPYL4Q9UJ04 414 aa23.26■■□□□ 1.31
TPM4-206ENST00000587201 AFDNP55196 1824 aaKnown RBP23.25■■□□□ 1.31
TPM4-206ENST00000587201 NBPF26B4DH59 902 aa23.25■■□□□ 1.31
TPM4-206ENST00000587201 GIGYF1O75420 1035 aaPredicted RBP23.25■■□□□ 1.31
TPM4-206ENST00000587201 NBPF10Q6P3W6 841 aaKnown RBP23.25■■□□□ 1.31
TPM4-206ENST00000587201 NBPF15Q8N660 670 aa23.25■■□□□ 1.31
TPM4-206ENST00000587201 NRXN2Q9P2S2 1712 aa23.25■■□□□ 1.31
TPM4-206ENST00000587201 ZNF316A6NFI3 1004 aaPredicted RBP23.24■■□□□ 1.31
TPM4-206ENST00000587201 DALRD3Q5D0E6 543 aaKnown RBP23.23■■□□□ 1.31
TPM4-206ENST00000587201 SETDB2Q96T68 719 aa23.23■■□□□ 1.31
TPM4-206ENST00000587201 CARMIL3Q8ND23 1372 aa23.23■■□□□ 1.31
TPM4-206ENST00000587201 ARHGAP27Q6ZUM4 889 aa23.22■■□□□ 1.31
TPM4-206ENST00000587201 LAMB4A4D0S4 1761 aa23.22■■□□□ 1.31
TPM4-206ENST00000587201 BRCA1P38398 1863 aaKnown RBP23.22■■□□□ 1.31
TPM4-206ENST00000587201 CLEC4GQ6UXB4 293 aa23.21■■□□□ 1.31
TPM4-206ENST00000587201 ZNF652Q9Y2D9 606 aa23.21■■□□□ 1.31
TPM4-206ENST00000587201 BCORQ6W2J9 1755 aa23.2■■□□□ 1.3
TPM4-206ENST00000587201 NPHP1O15259 732 aa23.2■■□□□ 1.3
TPM4-206ENST00000587201 NGEFQ8N5V2 710 aa23.2■■□□□ 1.3
TPM4-206ENST00000587201 BABAM1Q9NWV8 329 aa23.2■■□□□ 1.3
TPM4-206ENST00000587201 ATP10DQ9P241 1426 aa23.19■■□□□ 1.3
TPM4-206ENST00000587201 PRR5LQ6MZQ0 368 aa23.19■■□□□ 1.3
TPM4-206ENST00000587201 C2CD5Q86YS7 1000 aa23.19■■□□□ 1.3
TPM4-206ENST00000587201 H0YIN7 160 aa23.18■■□□□ 1.3
TPM4-206ENST00000587201 CCDC24Q8N4L8 307 aa23.18■■□□□ 1.3
TPM4-206ENST00000587201 TRIM35Q9UPQ4 493 aa23.18■■□□□ 1.3
TPM4-206ENST00000587201 MYL6BP14649 208 aa23.17■■□□□ 1.3
TPM4-206ENST00000587201 CNBD1Q8NA66 436 aa23.17■■□□□ 1.3
TPM4-206ENST00000587201 LAS1LQ9Y4W2 734 aaKnown RBP23.17■■□□□ 1.3
TPM4-206ENST00000587201 ADCY9O60503 1353 aa23.16■■□□□ 1.3
TPM4-206ENST00000587201 PDE6BP35913 854 aa23.16■■□□□ 1.3
TPM4-206ENST00000587201 ST5P78524 1137 aa23.16■■□□□ 1.3
TPM4-206ENST00000587201 BRIP1Q9BX63 1249 aa23.16■■□□□ 1.3
TPM4-206ENST00000587201 ARFGEF1Q9Y6D6 1849 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms