RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 FOXD4L4Q8WXT5 416 aaPredicted RBP17.23■□□□□ 0.35
CDK5RAP3-237ENST00000585163 LTV1Q96GA3 475 aaPredicted RBP17.23■□□□□ 0.35
CDK5RAP3-237ENST00000585163 IL25Q9H293 177 aa17.23■□□□□ 0.35
CDK5RAP3-237ENST00000585163 SURF6O75683 361 aaKnown RBP17.22■□□□□ 0.35
CDK5RAP3-237ENST00000585163 NUTM1Q86Y26 1132 aa17.22■□□□□ 0.35
CDK5RAP3-237ENST00000585163 THEMISQ8N1K5 641 aaPredicted RBP17.22■□□□□ 0.35
CDK5RAP3-237ENST00000585163 UPF3BQ9BZI7 483 aaKnown RBP17.22■□□□□ 0.35
CDK5RAP3-237ENST00000585163 PDE4CQ08493 712 aa17.22■□□□□ 0.35
CDK5RAP3-237ENST00000585163 PI4K2BQ8TCG2 481 aa17.22■□□□□ 0.35
CDK5RAP3-237ENST00000585163 RHPN1Q8TCX5 695 aa17.22■□□□□ 0.35
CDK5RAP3-237ENST00000585163 SYCE3A1L190 88 aa17.21■□□□□ 0.35
CDK5RAP3-237ENST00000585163 PDIA4P13667 645 aaKnown RBP17.21■□□□□ 0.35
CDK5RAP3-237ENST00000585163 NOL8Q76FK4 1167 aaKnown RBP17.21■□□□□ 0.35
CDK5RAP3-237ENST00000585163 MED1Q15648 1581 aaPredicted RBP17.21■□□□□ 0.34
CDK5RAP3-237ENST00000585163 KCNA6P17658 529 aa17.2■□□□□ 0.34
CDK5RAP3-237ENST00000585163 USHBP1Q8N6Y0 703 aa17.2■□□□□ 0.34
CDK5RAP3-237ENST00000585163 KIF1BPQ96EK5 621 aa17.2■□□□□ 0.34
CDK5RAP3-237ENST00000585163 SRGAP3O43295 1099 aa17.2■□□□□ 0.34
CDK5RAP3-237ENST00000585163 HOXB7P09629 217 aa17.2■□□□□ 0.34
CDK5RAP3-237ENST00000585163 MSNP26038 577 aaKnown RBP17.2■□□□□ 0.34
CDK5RAP3-237ENST00000585163 EIF4A1P60842 406 aaKnown RBP17.2■□□□□ 0.34
CDK5RAP3-237ENST00000585163 NBPF7P0C2Y1 421 aaPredicted RBP17.19■□□□□ 0.34
CDK5RAP3-237ENST00000585163 RAD50Q92878 1312 aa17.19■□□□□ 0.34
CDK5RAP3-237ENST00000585163 LTN1O94822 1766 aa17.19■□□□□ 0.34
CDK5RAP3-237ENST00000585163 SGSM2O43147 1006 aa17.19■□□□□ 0.34
CDK5RAP3-237ENST00000585163 EIF2S2P20042 333 aaKnown RBP17.18■□□□□ 0.34
CDK5RAP3-237ENST00000585163 BEND3Q5T5X7 828 aa17.18■□□□□ 0.34
CDK5RAP3-237ENST00000585163 CHMP4AQ9BY43 222 aa17.18■□□□□ 0.34
CDK5RAP3-237ENST00000585163 NOL7Q9UMY1 257 aaKnown RBP17.18■□□□□ 0.34
CDK5RAP3-237ENST00000585163 IP6K1Q92551 441 aa17.18■□□□□ 0.34
CDK5RAP3-237ENST00000585163 KDM3BQ7LBC6 1761 aa17.17■□□□□ 0.34
CDK5RAP3-237ENST00000585163 DNAAF4Q8WXU2 420 aa17.17■□□□□ 0.34
CDK5RAP3-237ENST00000585163 CHPF2Q9P2E5 772 aa17.17■□□□□ 0.34
CDK5RAP3-237ENST00000585163 WDR33Q9C0J8 1336 aaKnown RBP17.17■□□□□ 0.34
CDK5RAP3-237ENST00000585163 MAP4K4O95819 1239 aaPredicted RBP17.17■□□□□ 0.34
CDK5RAP3-237ENST00000585163 CNTROBQ8N137 903 aa17.17■□□□□ 0.34
CDK5RAP3-237ENST00000585163 LGR6Q9HBX8 967 aa17.17■□□□□ 0.34
CDK5RAP3-237ENST00000585163 PI4KAP2A4QPH2 592 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 OFD1O75665 1012 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 NBPF6Q5VWK0 638 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 KLHL34Q8N239 644 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 PI4KAP1Q8N8J0 262 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 NBPF4Q96M43 638 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 HSP90AB4PQ58FF6 505 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 LSG1Q9H089 658 aaKnown RBP17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 SNX14Q9Y5W7 946 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 CRYBG1Q9Y4K1 1723 aa17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 USP42Q9H9J4 1324 aaKnown RBP17.16■□□□□ 0.34
CDK5RAP3-237ENST00000585163 SYAP1Q96A49 352 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-237ENST00000585163 TTC14Q96N46 770 aa17.15■□□□□ 0.34
CDK5RAP3-237ENST00000585163 TPM2P07951 284 aa17.15■□□□□ 0.34
CDK5RAP3-237ENST00000585163 PLPPR3Q6T4P5 718 aa17.15■□□□□ 0.34
CDK5RAP3-237ENST00000585163 C14orf37Q86TY3 774 aa17.15■□□□□ 0.34
CDK5RAP3-237ENST00000585163 NFAT5O94916 1531 aa17.14■□□□□ 0.34
CDK5RAP3-237ENST00000585163 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.14■□□□□ 0.33
CDK5RAP3-237ENST00000585163 PHF8Q9UPP1 1060 aa17.14■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ZNF500O60304 480 aaPredicted RBP17.14■□□□□ 0.33
CDK5RAP3-237ENST00000585163 TTC41PQ6P2S7 1318 aa17.14■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ADCY9O60503 1353 aa17.14■□□□□ 0.33
CDK5RAP3-237ENST00000585163 MTX1Q13505 466 aa17.13■□□□□ 0.33
CDK5RAP3-237ENST00000585163 KIAA1211Q6ZU35 1233 aa17.13■□□□□ 0.33
CDK5RAP3-237ENST00000585163 RPAP1Q9BWH6 1393 aaPredicted RBP17.13■□□□□ 0.33
CDK5RAP3-237ENST00000585163 KCNQ3O43525 872 aa17.13■□□□□ 0.33
CDK5RAP3-237ENST00000585163 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.13■□□□□ 0.33
CDK5RAP3-237ENST00000585163 RASEFQ8IZ41 740 aa17.13■□□□□ 0.33
CDK5RAP3-237ENST00000585163 FER1L4A9Z1Z3 1794 aa17.13■□□□□ 0.33
CDK5RAP3-237ENST00000585163 LMO7Q8WWI1 1683 aa17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 GLRX3O76003 335 aaKnown RBP17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 USP48Q86UV5 1035 aa17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 TMEM87AQ8NBN3 555 aa17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 TSPY26PQ9H489 355 aa17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 RRP9O43818 475 aaKnown RBP17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 GADD45BO75293 160 aaPredicted RBP17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 CWC27Q6UX04 472 aaKnown RBP17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 GDPD2Q9HCC8 539 aa17.12■□□□□ 0.33
CDK5RAP3-237ENST00000585163 BTBD11A6QL63 1104 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 PHF14O94880 888 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 MCM5P33992 734 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 AK2P54819 239 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 TEFQ10587 303 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 AKAP4Q5JQC9 854 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 RNF214Q8ND24 703 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 LIMCH1Q9UPQ0 1083 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ZKSCAN5Q9Y2L8 839 aa17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 FOXD4L6Q3SYB3 417 aaPredicted RBP17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 FOXD4L3Q6VB84 417 aaPredicted RBP17.11■□□□□ 0.33
CDK5RAP3-237ENST00000585163 TCHHQ07283 1943 aa17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ANXA1P04083 346 aa17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 RUFY3Q7L099 469 aa17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 DBF4Q9UBU7 674 aaPredicted RBP17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ADGRL3Q9HAR2 1447 aa17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 TERF1P54274 439 aa17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 HSP90AA2PQ14568 343 aaPredicted RBP17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 CCDC39Q9UFE4 941 aa17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 SPG7Q9UQ90 795 aa17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 PHRF1Q9P1Y6 1649 aaKnown RBP17.1■□□□□ 0.33
CDK5RAP3-237ENST00000585163 SETD1BQ9UPS6 1966 aaKnown RBP17.09■□□□□ 0.33
CDK5RAP3-237ENST00000585163 OS9Q13438 667 aaPredicted RBP17.09■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ZNF530Q6P9A1 599 aaPredicted RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms