RNA–Protein interactions for RNA: ENST00000580784.5

CSNK1D-215, Transcript of casein kinase 1 delta, humanhuman

TSL 1 (best)

Gene CSNK1D, Length 1,081 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-215ENST00000580784 DDR1Q08345 913 aa28.41■■■□□ 2.14
CSNK1D-215ENST00000580784 CANXP27824 592 aaKnown RBP28.4■■■□□ 2.14
CSNK1D-215ENST00000580784 COL15A1P39059 1388 aa28.39■■■□□ 2.14
CSNK1D-215ENST00000580784 HEG1Q9ULI3 1381 aa28.39■■■□□ 2.14
CSNK1D-215ENST00000580784 STARD3NLO95772 234 aa28.39■■■□□ 2.14
CSNK1D-215ENST00000580784 TM4SF1P30408 202 aa28.39■■■□□ 2.14
CSNK1D-215ENST00000580784 BTBD11A6QL63 1104 aa28.38■■■□□ 2.13
CSNK1D-215ENST00000580784 KCNQ3O43525 872 aa28.38■■■□□ 2.13
CSNK1D-215ENST00000580784 MCM10Q7L590 875 aa28.38■■■□□ 2.13
CSNK1D-215ENST00000580784 NARFQ9UHQ1 456 aa28.38■■■□□ 2.13
CSNK1D-215ENST00000580784 DPEP1P16444 411 aa28.37■■■□□ 2.13
CSNK1D-215ENST00000580784 RTF1Q92541 710 aaKnown RBP28.37■■■□□ 2.13
CSNK1D-215ENST00000580784 FMNL2Q96PY5 1086 aa28.36■■■□□ 2.13
CSNK1D-215ENST00000580784 TEX13AQ9BXU3 409 aaPredicted RBP28.36■■■□□ 2.13
CSNK1D-215ENST00000580784 POLRMTO00411 1230 aaKnown RBP28.35■■■□□ 2.13
CSNK1D-215ENST00000580784 DCTN1Q14203 1278 aa28.35■■■□□ 2.13
CSNK1D-215ENST00000580784 EIF5P55010 431 aaKnown RBP28.34■■■□□ 2.13
CSNK1D-215ENST00000580784 BCL2L12Q9HB09 334 aa28.34■■■□□ 2.13
CSNK1D-215ENST00000580784 BCS1LQ9Y276 419 aa28.34■■■□□ 2.13
CSNK1D-215ENST00000580784 BRCA1P38398 1863 aaKnown RBP28.32■■■□□ 2.12
CSNK1D-215ENST00000580784 KCNA3P22001 575 aa28.32■■■□□ 2.12
CSNK1D-215ENST00000580784 NFIXQ14938 502 aa28.32■■■□□ 2.12
CSNK1D-215ENST00000580784 HTATSF1O43719 755 aaKnown RBP28.31■■■□□ 2.12
CSNK1D-215ENST00000580784 DDX10Q13206 875 aaKnown RBP28.31■■■□□ 2.12
CSNK1D-215ENST00000580784 AFDNP55196 1824 aaKnown RBP28.31■■■□□ 2.12
CSNK1D-215ENST00000580784 DLG5Q8TDM6 1919 aa28.31■■■□□ 2.12
CSNK1D-215ENST00000580784 A1BGP04217 495 aa28.3■■■□□ 2.12
CSNK1D-215ENST00000580784 A0A087WZG4 1122 aa28.29■■■□□ 2.12
CSNK1D-215ENST00000580784 ZNF330Q9Y3S2 320 aaPredicted RBP28.29■■■□□ 2.12
CSNK1D-215ENST00000580784 NEFMP07197 916 aa28.28■■■□□ 2.12
CSNK1D-215ENST00000580784 PLEKHF1Q96S99 279 aa28.28■■■□□ 2.12
CSNK1D-215ENST00000580784 USP16Q9Y5T5 823 aa28.28■■■□□ 2.12
CSNK1D-215ENST00000580784 ATP10DQ9P241 1426 aa28.27■■■□□ 2.12
CSNK1D-215ENST00000580784 TBC1D2BQ9UPU7 963 aa28.27■■■□□ 2.12
CSNK1D-215ENST00000580784 PRAMEF22A3QJZ6 481 aa28.26■■■□□ 2.11
CSNK1D-215ENST00000580784 CHRNA5P30532 468 aa28.26■■■□□ 2.11
CSNK1D-215ENST00000580784 IL6STP40189 918 aaPredicted RBP28.26■■■□□ 2.11
CSNK1D-215ENST00000580784 RALBP1Q15311 655 aa28.26■■■□□ 2.11
CSNK1D-215ENST00000580784 PIM2Q9P1W9 311 aa28.26■■■□□ 2.11
CSNK1D-215ENST00000580784 ADCY9O60503 1353 aa28.25■■■□□ 2.11
CSNK1D-215ENST00000580784 SERPINB2P05120 415 aa28.25■■■□□ 2.11
CSNK1D-215ENST00000580784 TAF7Q15545 349 aaPredicted RBP28.25■■■□□ 2.11
CSNK1D-215ENST00000580784 BICDL1Q6ZP65 573 aa28.25■■■□□ 2.11
CSNK1D-215ENST00000580784 NRXN2Q9P2S2 1712 aa28.24■■■□□ 2.11
CSNK1D-215ENST00000580784 GIGYF1O75420 1035 aaPredicted RBP28.24■■■□□ 2.11
CSNK1D-215ENST00000580784 C1QTNF8P60827 252 aa28.24■■■□□ 2.11
CSNK1D-215ENST00000580784 ARHGAP27Q6ZUM4 889 aa28.24■■■□□ 2.11
CSNK1D-215ENST00000580784 MIS18AQ9NYP9 233 aa28.24■■■□□ 2.11
CSNK1D-215ENST00000580784 ARFGEF1Q9Y6D6 1849 aa28.23■■■□□ 2.11
CSNK1D-215ENST00000580784 SNRPA1P09661 255 aaKnown RBP28.22■■■□□ 2.11
CSNK1D-215ENST00000580784 PIP4K2AP48426 406 aaPredicted RBP28.22■■■□□ 2.11
CSNK1D-215ENST00000580784 NFE2L2Q16236 605 aa28.21■■■□□ 2.11
CSNK1D-215ENST00000580784 DALRD3Q5D0E6 543 aaKnown RBP28.21■■■□□ 2.11
CSNK1D-215ENST00000580784 TBC1D9BQ66K14 1250 aa28.21■■■□□ 2.11
CSNK1D-215ENST00000580784 ZNF526Q8TF50 670 aaPredicted RBP28.21■■■□□ 2.11
CSNK1D-215ENST00000580784 NPM2Q86SE8 214 aaKnown RBP28.2■■■□□ 2.1
CSNK1D-215ENST00000580784 PNNQ9H307 717 aaKnown RBP28.2■■■□□ 2.1
CSNK1D-215ENST00000580784 SCN7AQ01118 1682 aa28.19■■■□□ 2.1
CSNK1D-215ENST00000580784 GPBP1L1Q9HC44 474 aaPredicted RBP28.19■■■□□ 2.1
CSNK1D-215ENST00000580784 MAPK8IP3Q9UPT6 1336 aa28.18■■■□□ 2.1
CSNK1D-215ENST00000580784 CAMTA2O94983 1202 aa28.17■■■□□ 2.1
CSNK1D-215ENST00000580784 THUMPD2Q9BTF0 503 aaKnown RBP28.17■■■□□ 2.1
CSNK1D-215ENST00000580784 DZIP3Q86Y13 1208 aaKnown RBP28.16■■■□□ 2.1
CSNK1D-215ENST00000580784 CARMIL3Q8ND23 1372 aa28.15■■■□□ 2.1
CSNK1D-215ENST00000580784 NBPF26B4DH59 902 aa28.14■■■□□ 2.1
CSNK1D-215ENST00000580784 NBPF10Q6P3W6 841 aaKnown RBP28.14■■■□□ 2.1
CSNK1D-215ENST00000580784 NBPF15Q8N660 670 aa28.14■■■□□ 2.1
CSNK1D-215ENST00000580784 PNISRQ8TF01 805 aaKnown RBP28.14■■■□□ 2.1
CSNK1D-215ENST00000580784 MYBBP1AQ9BQG0 1328 aaKnown RBP28.14■■■□□ 2.09
CSNK1D-215ENST00000580784 KDM3BQ7LBC6 1761 aa28.14■■■□□ 2.09
CSNK1D-215ENST00000580784 BCORQ6W2J9 1755 aa28.13■■■□□ 2.09
CSNK1D-215ENST00000580784 DLEC1Q9Y238 1755 aa28.12■■■□□ 2.09
CSNK1D-215ENST00000580784 C2CD5Q86YS7 1000 aa28.12■■■□□ 2.09
CSNK1D-215ENST00000580784 CCDC24Q8N4L8 307 aa28.12■■■□□ 2.09
CSNK1D-215ENST00000580784 SETDB2Q96T68 719 aa28.12■■■□□ 2.09
CSNK1D-215ENST00000580784 ANKRD31Q8N7Z5 1873 aa28.12■■■□□ 2.09
CSNK1D-215ENST00000580784 H0YIN7 160 aa28.1■■■□□ 2.09
CSNK1D-215ENST00000580784 PRR5LQ6MZQ0 368 aa28.1■■■□□ 2.09
CSNK1D-215ENST00000580784 RIPK4P57078 832 aa28.09■■■□□ 2.09
CSNK1D-215ENST00000580784 EIF4A1P60842 406 aaKnown RBP28.09■■■□□ 2.09
CSNK1D-215ENST00000580784 LAMB4A4D0S4 1761 aa28.09■■■□□ 2.09
CSNK1D-215ENST00000580784 SENP3-EIF4A1A0A087X0R7 540 aa28.08■■■□□ 2.09
CSNK1D-215ENST00000580784 C9orf131Q5VYM1 1079 aa28.08■■■□□ 2.09
CSNK1D-215ENST00000580784 BRIP1Q9BX63 1249 aa28.08■■■□□ 2.09
CSNK1D-215ENST00000580784 SBF1O95248 1867 aa28.08■■■□□ 2.09
CSNK1D-215ENST00000580784 TTLL6Q8N841 843 aa28.07■■■□□ 2.08
CSNK1D-215ENST00000580784 CLEC4GQ6UXB4 293 aa28.06■■■□□ 2.08
CSNK1D-215ENST00000580784 PDE6BP35913 854 aa28.05■■■□□ 2.08
CSNK1D-215ENST00000580784 TMPOP42166 694 aaKnown RBP28.05■■■□□ 2.08
CSNK1D-215ENST00000580784 CNBD1Q8NA66 436 aa28.05■■■□□ 2.08
CSNK1D-215ENST00000580784 NPHP1O15259 732 aa28.04■■■□□ 2.08
CSNK1D-215ENST00000580784 CCDC146Q8IYE0 955 aa28.04■■■□□ 2.08
CSNK1D-215ENST00000580784 ZNF652Q9Y2D9 606 aa28.04■■■□□ 2.08
CSNK1D-215ENST00000580784 NGEFQ8N5V2 710 aa28.03■■■□□ 2.08
CSNK1D-215ENST00000580784 ZNF622Q969S3 477 aaKnown RBP eCLIP28.03■■■□□ 2.08
CSNK1D-215ENST00000580784 RRP7AQ9Y3A4 280 aaKnown RBP28.03■■■□□ 2.08
CSNK1D-215ENST00000580784 COL11A2P13942 1736 aaPredicted RBP28.02■■■□□ 2.08
CSNK1D-215ENST00000580784 KIF3CO14782 793 aa28.02■■■□□ 2.08
CSNK1D-215ENST00000580784 RNF181Q9P0P0 153 aa28.02■■■□□ 2.08
CSNK1D-215ENST00000580784 HLFQ16534 295 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms