RNA–Protein interactions for RNA: ENST00000573895.1

ABR-223, Transcript of ABR, RhoGEF and GTPase activating protein, human

TSL 3

Gene ABR, Length 1,010 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABR-223	ENST00000573895	SOS1	Q07889	1333 aa	Predicted RBP	18.95	■□□□□ 0.62
ABR-223	ENST00000573895	TAF7	Q15545	349 aa	Predicted RBP	18.94	■□□□□ 0.62
ABR-223	ENST00000573895	KLHL34	Q8N239	644 aa		18.94	■□□□□ 0.62
ABR-223	ENST00000573895	USP42	Q9H9J4	1324 aa	Known RBP	18.94	■□□□□ 0.62
ABR-223	ENST00000573895	CHD4	Q14839	1912 aa		18.94	■□□□□ 0.62
ABR-223	ENST00000573895	KIF13B	Q9NQT8	1826 aa		18.93	■□□□□ 0.62
ABR-223	ENST00000573895	PNISR	Q8TF01	805 aa	Known RBP	18.93	■□□□□ 0.62
ABR-223	ENST00000573895	MMP10	P09238	476 aa		18.92	■□□□□ 0.62
ABR-223	ENST00000573895	DCTN1	Q14203	1278 aa		18.92	■□□□□ 0.62
ABR-223	ENST00000573895	NLGN2	Q8NFZ4	835 aa		18.92	■□□□□ 0.62
ABR-223	ENST00000573895	ZBTB1	Q9Y2K1	713 aa		18.92	■□□□□ 0.62
ABR-223	ENST00000573895	COL15A1	P39059	1388 aa		18.91	■□□□□ 0.62
ABR-223	ENST00000573895	KDM3B	Q7LBC6	1761 aa		18.91	■□□□□ 0.62
ABR-223	ENST00000573895	KCNQ3	O43525	872 aa		18.9	■□□□□ 0.62
ABR-223	ENST00000573895	ZPR1	O75312	459 aa		18.9	■□□□□ 0.62
ABR-223	ENST00000573895	WDR43	Q15061	677 aa	Known RBP eCLIP	18.9	■□□□□ 0.62
ABR-223	ENST00000573895	NARF	Q9UHQ1	456 aa		18.9	■□□□□ 0.62
ABR-223	ENST00000573895		A0A087WZG4	1122 aa		18.89	■□□□□ 0.61
ABR-223	ENST00000573895	EIF5	P55010	431 aa	Known RBP	18.89	■□□□□ 0.61
ABR-223	ENST00000573895	SNRPA1	P09661	255 aa	Known RBP	18.88	■□□□□ 0.61
ABR-223	ENST00000573895	IL6ST	P40189	918 aa	Predicted RBP	18.88	■□□□□ 0.61
ABR-223	ENST00000573895	SRP68	Q9UHB9	627 aa	Known RBP	18.88	■□□□□ 0.61
ABR-223	ENST00000573895	PARP3	Q9Y6F1	533 aa		18.88	■□□□□ 0.61
ABR-223	ENST00000573895	TMPO	P42166	694 aa	Known RBP	18.87	■□□□□ 0.61
ABR-223	ENST00000573895	RIPK4	P57078	832 aa		18.87	■□□□□ 0.61
ABR-223	ENST00000573895	LMOD3	Q0VAK6	560 aa		18.87	■□□□□ 0.61
ABR-223	ENST00000573895	FKBP8	Q14318	412 aa		18.87	■□□□□ 0.61
ABR-223	ENST00000573895	GPR162	Q16538	588 aa		18.87	■□□□□ 0.61
ABR-223	ENST00000573895	RUNDC1	Q96C34	613 aa		18.87	■□□□□ 0.61
ABR-223	ENST00000573895	CANX	P27824	592 aa	Known RBP	18.86	■□□□□ 0.61
ABR-223	ENST00000573895	TM4SF1	P30408	202 aa		18.86	■□□□□ 0.61
ABR-223	ENST00000573895	USPL1	Q5W0Q7	1092 aa		18.86	■□□□□ 0.61
ABR-223	ENST00000573895	FAM9B	Q8IZU0	186 aa		18.86	■□□□□ 0.61
ABR-223	ENST00000573895	ADAMTS8	Q9UP79	889 aa		18.86	■□□□□ 0.61
ABR-223	ENST00000573895	C10orf71	Q711Q0	1435 aa		18.85	■□□□□ 0.61
ABR-223	ENST00000573895	GRIN3B	O60391	1043 aa		18.85	■□□□□ 0.61
ABR-223	ENST00000573895	TGFB2	P61812	414 aa		18.85	■□□□□ 0.61
ABR-223	ENST00000573895	BABAM1	Q9NWV8	329 aa		18.85	■□□□□ 0.61
ABR-223	ENST00000573895	LAMB4	A4D0S4	1761 aa		18.85	■□□□□ 0.61
ABR-223	ENST00000573895	KIAA1551	Q9HCM1	1747 aa		18.84	■□□□□ 0.61
ABR-223	ENST00000573895	USP16	Q9Y5T5	823 aa		18.84	■□□□□ 0.61
ABR-223	ENST00000573895	YY1	P25490	414 aa		18.83	■□□□□ 0.6
ABR-223	ENST00000573895	NPM2	Q86SE8	214 aa	Known RBP	18.83	■□□□□ 0.6
ABR-223	ENST00000573895	SCN7A	Q01118	1682 aa		18.82	■□□□□ 0.6
ABR-223	ENST00000573895	AFDN	P55196	1824 aa	Known RBP	18.82	■□□□□ 0.6
ABR-223	ENST00000573895	A1BG	P04217	495 aa		18.82	■□□□□ 0.6
ABR-223	ENST00000573895	DDR1	Q08345	913 aa		18.82	■□□□□ 0.6
ABR-223	ENST00000573895	THUMPD2	Q9BTF0	503 aa	Known RBP	18.82	■□□□□ 0.6
ABR-223	ENST00000573895	MIS18A	Q9NYP9	233 aa		18.82	■□□□□ 0.6
ABR-223	ENST00000573895	NRXN2	Q9P2S2	1712 aa		18.82	■□□□□ 0.6
ABR-223	ENST00000573895	PRAMEF22	A3QJZ6	481 aa		18.81	■□□□□ 0.6
ABR-223	ENST00000573895	POLRMT	O00411	1230 aa	Known RBP	18.81	■□□□□ 0.6
ABR-223	ENST00000573895	EIF4A1	P60842	406 aa	Known RBP	18.81	■□□□□ 0.6
ABR-223	ENST00000573895	CCDC146	Q8IYE0	955 aa		18.81	■□□□□ 0.6
ABR-223	ENST00000573895	BCL2L12	Q9HB09	334 aa		18.81	■□□□□ 0.6
ABR-223	ENST00000573895	N4BP2	Q86UW6	1770 aa	Predicted RBP	18.81	■□□□□ 0.6
ABR-223	ENST00000573895	BRCA1	P38398	1863 aa	Known RBP	18.8	■□□□□ 0.6
ABR-223	ENST00000573895	PXDNL	A1KZ92	1463 aa		18.8	■□□□□ 0.6
ABR-223	ENST00000573895	GIGYF1	O75420	1035 aa	Predicted RBP	18.8	■□□□□ 0.6
ABR-223	ENST00000573895	YBX3	P16989	372 aa	Known RBP eCLIP	18.8	■□□□□ 0.6
ABR-223	ENST00000573895	PELP1	Q8IZL8	1130 aa	Known RBP	18.8	■□□□□ 0.6
ABR-223	ENST00000573895	BCOR	Q6W2J9	1755 aa		18.8	■□□□□ 0.6
ABR-223	ENST00000573895	RGL2	O15211	777 aa		18.79	■□□□□ 0.6
ABR-223	ENST00000573895	NFIX	Q14938	502 aa		18.79	■□□□□ 0.6
ABR-223	ENST00000573895	TSPYL4	Q9UJ04	414 aa		18.78	■□□□□ 0.6
ABR-223	ENST00000573895	TRIM35	Q9UPQ4	493 aa		18.78	■□□□□ 0.6
ABR-223	ENST00000573895	TBC1D2B	Q9UPU7	963 aa		18.78	■□□□□ 0.6
ABR-223	ENST00000573895	CAMTA2	O94983	1202 aa		18.77	■□□□□ 0.6
ABR-223	ENST00000573895	CLEC4G	Q6UXB4	293 aa		18.77	■□□□□ 0.6
ABR-223	ENST00000573895	RRP7A	Q9Y3A4	280 aa	Known RBP	18.77	■□□□□ 0.6
ABR-223	ENST00000573895	NBPF26	B4DH59	902 aa		18.76	■□□□□ 0.59
ABR-223	ENST00000573895	NEUROD2	Q15784	382 aa		18.76	■□□□□ 0.59
ABR-223	ENST00000573895	NBPF10	Q6P3W6	841 aa	Known RBP	18.76	■□□□□ 0.59
ABR-223	ENST00000573895	DZIP3	Q86Y13	1208 aa	Known RBP	18.76	■□□□□ 0.59
ABR-223	ENST00000573895	NBPF15	Q8N660	670 aa		18.76	■□□□□ 0.59
ABR-223	ENST00000573895	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.76	■□□□□ 0.59
ABR-223	ENST00000573895	SERPINB2	P05120	415 aa		18.75	■□□□□ 0.59
ABR-223	ENST00000573895	ERBB4	Q15303	1308 aa		18.74	■□□□□ 0.59
ABR-223	ENST00000573895	ARFGEF1	Q9Y6D6	1849 aa		18.74	■□□□□ 0.59
ABR-223	ENST00000573895		A0A0G2JLW4	131 aa		18.74	■□□□□ 0.59
ABR-223	ENST00000573895	CHL1	O00533	1208 aa		18.74	■□□□□ 0.59
ABR-223	ENST00000573895	DPEP1	P16444	411 aa		18.74	■□□□□ 0.59
ABR-223	ENST00000573895	KCNA3	P22001	575 aa		18.74	■□□□□ 0.59
ABR-223	ENST00000573895	CARMIL3	Q8ND23	1372 aa		18.73	■□□□□ 0.59
ABR-223	ENST00000573895	TBC1D9B	Q66K14	1250 aa		18.73	■□□□□ 0.59
ABR-223	ENST00000573895	ZNF652	Q9Y2D9	606 aa		18.73	■□□□□ 0.59
ABR-223	ENST00000573895	PIP4K2A	P48426	406 aa	Predicted RBP	18.72	■□□□□ 0.59
ABR-223	ENST00000573895	NGEF	Q8N5V2	710 aa		18.72	■□□□□ 0.59
ABR-223	ENST00000573895	SETDB2	Q96T68	719 aa		18.72	■□□□□ 0.59
ABR-223	ENST00000573895	DLEC1	Q9Y238	1755 aa		18.72	■□□□□ 0.59
ABR-223	ENST00000573895	APAF1	O14727	1248 aa		18.71	■□□□□ 0.59
ABR-223	ENST00000573895	CFAP44	Q96MT7	982 aa		18.71	■□□□□ 0.59
ABR-223	ENST00000573895	PIM2	Q9P1W9	311 aa		18.71	■□□□□ 0.59
ABR-223	ENST00000573895	PDZRN3	Q9UPQ7	1066 aa		18.71	■□□□□ 0.59
ABR-223	ENST00000573895	NUP98	P52948	1817 aa		18.7	■□□□□ 0.58
ABR-223	ENST00000573895	CALD1	Q05682	793 aa	Known RBP	18.7	■□□□□ 0.58
ABR-223	ENST00000573895	BICDL1	Q6ZP65	573 aa		18.7	■□□□□ 0.58
ABR-223	ENST00000573895	ERVV-1	B6SEH8	477 aa		18.69	■□□□□ 0.58
ABR-223	ENST00000573895	NCBP3	Q53F19	620 aa	Known RBP	18.69	■□□□□ 0.58
ABR-223	ENST00000573895	BCS1L	Q9Y276	419 aa		18.69	■□□□□ 0.58

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