RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 DDX54Q8TDD1 881 aaKnown RBP20.66■□□□□ 0.9
VPS53-215ENST00000573028 SYAP1Q96A49 352 aaPredicted RBP20.66■□□□□ 0.9
VPS53-215ENST00000573028 STAP2Q9UGK3 403 aa20.66■□□□□ 0.9
VPS53-215ENST00000573028 ZKSCAN5Q9Y2L8 839 aa20.66■□□□□ 0.9
VPS53-215ENST00000573028 NBPF7P0C2Y1 421 aaPredicted RBP20.66■□□□□ 0.9
VPS53-215ENST00000573028 RHPN1Q8TCX5 695 aa20.66■□□□□ 0.9
VPS53-215ENST00000573028 INTS4Q96HW7 963 aaKnown RBP20.66■□□□□ 0.9
VPS53-215ENST00000573028 PLCB2Q00722 1185 aa20.65■□□□□ 0.9
VPS53-215ENST00000573028 ABTB2Q8N961 1025 aa20.65■□□□□ 0.9
VPS53-215ENST00000573028 TTC21AQ8NDW8 1320 aa20.65■□□□□ 0.9
VPS53-215ENST00000573028 EID1Q9Y6B2 187 aa20.65■□□□□ 0.9
VPS53-215ENST00000573028 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.64■□□□□ 0.9
VPS53-215ENST00000573028 WDR33Q9C0J8 1336 aaKnown RBP20.64■□□□□ 0.9
VPS53-215ENST00000573028 HOXC9P31274 260 aa20.64■□□□□ 0.89
VPS53-215ENST00000573028 HS1BP3Q53T59 392 aa20.64■□□□□ 0.89
VPS53-215ENST00000573028 CCDC39Q9UFE4 941 aa20.64■□□□□ 0.89
VPS53-215ENST00000573028 CNPY2Q9Y2B0 182 aa20.64■□□□□ 0.89
VPS53-215ENST00000573028 KDRP35968 1356 aa20.63■□□□□ 0.89
VPS53-215ENST00000573028 HSPA4P34932 840 aa20.63■□□□□ 0.89
VPS53-215ENST00000573028 RASEFQ8IZ41 740 aa20.63■□□□□ 0.89
VPS53-215ENST00000573028 FIBPO43427 364 aa20.63■□□□□ 0.89
VPS53-215ENST00000573028 SSH3Q8TE77 659 aa20.63■□□□□ 0.89
VPS53-215ENST00000573028 PI4KAP2A4QPH2 592 aa20.62■□□□□ 0.89
VPS53-215ENST00000573028 PI4KAP1Q8N8J0 262 aa20.62■□□□□ 0.89
VPS53-215ENST00000573028 ZNF830Q96NB3 372 aaPredicted RBP20.62■□□□□ 0.89
VPS53-215ENST00000573028 CHPF2Q9P2E5 772 aa20.62■□□□□ 0.89
VPS53-215ENST00000573028 SNX14Q9Y5W7 946 aa20.62■□□□□ 0.89
VPS53-215ENST00000573028 AK2P54819 239 aa20.61■□□□□ 0.89
VPS53-215ENST00000573028 MAP3K5Q99683 1374 aa20.61■□□□□ 0.89
VPS53-215ENST00000573028 DNTTIP2Q5QJE6 756 aaKnown RBP20.61■□□□□ 0.89
VPS53-215ENST00000573028 UQCRHLA0A096LP55 91 aa20.61■□□□□ 0.89
VPS53-215ENST00000573028 UQCRHP07919 91 aa20.61■□□□□ 0.89
VPS53-215ENST00000573028 ZNF500O60304 480 aaPredicted RBP20.6■□□□□ 0.89
VPS53-215ENST00000573028 CNTROBQ8N137 903 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 USP25Q9UHP3 1055 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 PTPRUQ92729 1446 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 SGSM2O43147 1006 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 KCNQ3O43525 872 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 HTATSF1O43719 755 aaKnown RBP20.6■□□□□ 0.89
VPS53-215ENST00000573028 PI4K2BQ8TCG2 481 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 KIF1BPQ96EK5 621 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 LGR6Q9HBX8 967 aa20.6■□□□□ 0.89
VPS53-215ENST00000573028 CASTP20810 708 aaKnown RBP20.59■□□□□ 0.89
VPS53-215ENST00000573028 RBM33Q96EV2 1170 aaKnown RBP20.59■□□□□ 0.89
VPS53-215ENST00000573028 SMC3Q9UQE7 1217 aa20.59■□□□□ 0.89
VPS53-215ENST00000573028 PHF14O94880 888 aa20.59■□□□□ 0.89
VPS53-215ENST00000573028 DIAPH3Q9NSV4 1193 aa20.59■□□□□ 0.89
VPS53-215ENST00000573028 DIP2BQ9P265 1576 aa20.59■□□□□ 0.89
VPS53-215ENST00000573028 RAB11FIP3O75154 756 aa20.58■□□□□ 0.89
VPS53-215ENST00000573028 RAD50Q92878 1312 aa20.58■□□□□ 0.89
VPS53-215ENST00000573028 CCDC83Q8IWF9 413 aa20.58■□□□□ 0.88
VPS53-215ENST00000573028 RGPD1P0DJD0 1748 aa20.57■□□□□ 0.88
VPS53-215ENST00000573028 HCLS1P14317 486 aaPredicted RBP20.57■□□□□ 0.88
VPS53-215ENST00000573028 SSH2Q76I76 1423 aa20.57■□□□□ 0.88
VPS53-215ENST00000573028 SYT1P21579 422 aa20.57■□□□□ 0.88
VPS53-215ENST00000573028 RUFY3Q7L099 469 aa20.57■□□□□ 0.88
VPS53-215ENST00000573028 DNAAF4Q8WXU2 420 aa20.57■□□□□ 0.88
VPS53-215ENST00000573028 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.57■□□□□ 0.88
VPS53-215ENST00000573028 STX6O43752 255 aa20.56■□□□□ 0.88
VPS53-215ENST00000573028 ZSCAN22P10073 491 aaPredicted RBP20.56■□□□□ 0.88
VPS53-215ENST00000573028 LIMCH1Q9UPQ0 1083 aa20.56■□□□□ 0.88
VPS53-215ENST00000573028 CHMP3Q9Y3E7 222 aa20.56■□□□□ 0.88
VPS53-215ENST00000573028 LARGE1O95461 756 aa20.56■□□□□ 0.88
VPS53-215ENST00000573028 PRPF40BQ6NWY9 871 aaKnown RBP20.56■□□□□ 0.88
VPS53-215ENST00000573028 LSG1Q9H089 658 aaKnown RBP20.56■□□□□ 0.88
VPS53-215ENST00000573028 PA2G4Q9UQ80 394 aaKnown RBP20.56■□□□□ 0.88
VPS53-215ENST00000573028 VPS37CA5D8V6 355 aaPredicted RBP20.55■□□□□ 0.88
VPS53-215ENST00000573028 KCNJ4P48050 445 aa20.55■□□□□ 0.88
VPS53-215ENST00000573028 JAKMIP1Q96N16 626 aaKnown RBP20.55■□□□□ 0.88
VPS53-215ENST00000573028 PDCL3Q9H2J4 239 aa20.55■□□□□ 0.88
VPS53-215ENST00000573028 PLEKHG1Q9ULL1 1385 aa20.55■□□□□ 0.88
VPS53-215ENST00000573028 TEFQ10587 303 aa20.55■□□□□ 0.88
VPS53-215ENST00000573028 C9orf78Q9NZ63 289 aaPredicted RBP20.55■□□□□ 0.88
VPS53-215ENST00000573028 RPAP1Q9BWH6 1393 aaPredicted RBP20.54■□□□□ 0.88
VPS53-215ENST00000573028 CSPP1Q1MSJ5 1256 aa20.54■□□□□ 0.88
VPS53-215ENST00000573028 MPRIPQ6WCQ1 1025 aa20.54■□□□□ 0.88
VPS53-215ENST00000573028 AOX1Q06278 1338 aa20.54■□□□□ 0.88
VPS53-215ENST00000573028 PTH1RQ03431 593 aa20.54■□□□□ 0.88
VPS53-215ENST00000573028 POLA2Q14181 598 aa20.54■□□□□ 0.88
VPS53-215ENST00000573028 C17orf53Q8N3J3 647 aaPredicted RBP20.53■□□□□ 0.88
VPS53-215ENST00000573028 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.53■□□□□ 0.88
VPS53-215ENST00000573028 ADCK5Q3MIX3 580 aa20.53■□□□□ 0.88
VPS53-215ENST00000573028 CCDC183Q5T5S1 534 aa20.53■□□□□ 0.88
VPS53-215ENST00000573028 GIMAP6Q6P9H5 292 aa20.53■□□□□ 0.88
VPS53-215ENST00000573028 CLASRPQ8N2M8 674 aaKnown RBP20.53■□□□□ 0.88
VPS53-215ENST00000573028 ZMYND15Q9H091 742 aa20.53■□□□□ 0.88
VPS53-215ENST00000573028 TTC12Q9H892 705 aaPredicted RBP20.53■□□□□ 0.88
VPS53-215ENST00000573028 TCHHQ07283 1943 aa20.53■□□□□ 0.88
VPS53-215ENST00000573028 KIAA2012Q0VF49 1180 aa20.53■□□□□ 0.88
VPS53-215ENST00000573028 NECAB1Q8N987 351 aa20.53■□□□□ 0.88
VPS53-215ENST00000573028 BEND3Q5T5X7 828 aa20.52■□□□□ 0.88
VPS53-215ENST00000573028 SETD1BQ9UPS6 1966 aaKnown RBP20.52■□□□□ 0.88
VPS53-215ENST00000573028 GJB2P29033 226 aa20.52■□□□□ 0.88
VPS53-215ENST00000573028 EIF4A1P60842 406 aaKnown RBP20.52■□□□□ 0.88
VPS53-215ENST00000573028 DNM1Q05193 864 aaKnown RBP20.52■□□□□ 0.88
VPS53-215ENST00000573028 TTC14Q96N46 770 aa20.52■□□□□ 0.88
VPS53-215ENST00000573028 ADCY5O95622 1261 aa20.51■□□□□ 0.87
VPS53-215ENST00000573028 IFIT2P09913 472 aaKnown RBP20.51■□□□□ 0.87
VPS53-215ENST00000573028 MCM5P33992 734 aa20.51■□□□□ 0.87
VPS53-215ENST00000573028 NBPF6Q5VWK0 638 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 615.2 ms