RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 WDR63Q8IWG1 891 aa15.83■□□□□ 0.12
SF3B3-208ENST00000567250 DNAJC10Q8IXB1 793 aa15.83■□□□□ 0.12
SF3B3-208ENST00000567250 SALL2Q9Y467 1007 aaPredicted RBP15.83■□□□□ 0.12
SF3B3-208ENST00000567250 PSDA5PKW4 1024 aaPredicted RBP15.82■□□□□ 0.12
SF3B3-208ENST00000567250 GNPATO15228 680 aa15.82■□□□□ 0.12
SF3B3-208ENST00000567250 SSFA2P28290 1259 aa15.82■□□□□ 0.12
SF3B3-208ENST00000567250 CRKLP46109 303 aaKnown RBP15.82■□□□□ 0.12
SF3B3-208ENST00000567250 EIF4A1P60842 406 aaKnown RBP15.82■□□□□ 0.12
SF3B3-208ENST00000567250 SENP3-EIF4A1A0A087X0R7 540 aa15.81■□□□□ 0.12
SF3B3-208ENST00000567250 ZNF853P0CG23 659 aa15.81■□□□□ 0.12
SF3B3-208ENST00000567250 SCN7AQ01118 1682 aa15.81■□□□□ 0.12
SF3B3-208ENST00000567250 MBIPQ9NS73 344 aa15.81■□□□□ 0.12
SF3B3-208ENST00000567250 CCDC87Q9NVE4 849 aa15.81■□□□□ 0.12
SF3B3-208ENST00000567250 RTCBQ9Y3I0 505 aaKnown RBP15.81■□□□□ 0.12
SF3B3-208ENST00000567250 CYP19A1P11511 503 aaPredicted RBP15.8■□□□□ 0.12
SF3B3-208ENST00000567250 BCORQ6W2J9 1755 aa15.8■□□□□ 0.12
SF3B3-208ENST00000567250 LRP5O75197 1615 aa15.79■□□□□ 0.12
SF3B3-208ENST00000567250 PNPLA7Q6ZV29 1317 aa15.79■□□□□ 0.12
SF3B3-208ENST00000567250 GIGYF1O75420 1035 aaPredicted RBP15.79■□□□□ 0.12
SF3B3-208ENST00000567250 HOXB7P09629 217 aa15.79■□□□□ 0.12
SF3B3-208ENST00000567250 NPM2Q86SE8 214 aaKnown RBP15.79■□□□□ 0.12
SF3B3-208ENST00000567250 MYH16Q9H6N6 1097 aa15.79■□□□□ 0.12
SF3B3-208ENST00000567250 COL24A1Q17RW2 1714 aa15.79■□□□□ 0.12
SF3B3-208ENST00000567250 COL15A1P39059 1388 aa15.78■□□□□ 0.12
SF3B3-208ENST00000567250 SOS1Q07889 1333 aaPredicted RBP15.78■□□□□ 0.12
SF3B3-208ENST00000567250 ZNF521Q96K83 1311 aa15.78■□□□□ 0.12
SF3B3-208ENST00000567250 RPS6KA4O75676 772 aa15.78■□□□□ 0.12
SF3B3-208ENST00000567250 PHF14O94880 888 aa15.78■□□□□ 0.12
SF3B3-208ENST00000567250 CHMP4AQ9BY43 222 aa15.78■□□□□ 0.12
SF3B3-208ENST00000567250 ERBB4Q15303 1308 aa15.77■□□□□ 0.12
SF3B3-208ENST00000567250 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.77■□□□□ 0.12
SF3B3-208ENST00000567250 SLC16A10Q8TF71 515 aa15.77■□□□□ 0.12
SF3B3-208ENST00000567250 ZBTB1Q9Y2K1 713 aa15.77■□□□□ 0.12
SF3B3-208ENST00000567250 FANCIQ9NVI1 1328 aa15.76■□□□□ 0.11
SF3B3-208ENST00000567250 HNRNPUQ00839 825 aaKnown RBP eCLIP15.76■□□□□ 0.11
SF3B3-208ENST00000567250 GOLGA2Q08379 1002 aa15.76■□□□□ 0.11
SF3B3-208ENST00000567250 INTS5Q6P9B9 1019 aaKnown RBP15.76■□□□□ 0.11
SF3B3-208ENST00000567250 A0A087WZG4 1122 aa15.75■□□□□ 0.11
SF3B3-208ENST00000567250 PRAMEF22A3QJZ6 481 aa15.75■□□□□ 0.11
SF3B3-208ENST00000567250 IL6STP40189 918 aaPredicted RBP15.75■□□□□ 0.11
SF3B3-208ENST00000567250 TRAPPC3LQ5T215 181 aa15.75■□□□□ 0.11
SF3B3-208ENST00000567250 USP16Q9Y5T5 823 aa15.75■□□□□ 0.11
SF3B3-208ENST00000567250 CACNA1FO60840 1977 aa15.75■□□□□ 0.11
SF3B3-208ENST00000567250 E9PSI1 815 aa15.74■□□□□ 0.11
SF3B3-208ENST00000567250 CANXP27824 592 aaKnown RBP15.74■□□□□ 0.11
SF3B3-208ENST00000567250 COL23A1Q86Y22 540 aaPredicted RBP15.74■□□□□ 0.11
SF3B3-208ENST00000567250 TSR2Q969E8 191 aaKnown RBP15.74■□□□□ 0.11
SF3B3-208ENST00000567250 RFC4P35249 363 aa15.73■□□□□ 0.11
SF3B3-208ENST00000567250 HDGFL1Q5TGJ6 251 aa15.73■□□□□ 0.11
SF3B3-208ENST00000567250 DUSP27Q5VZP5 1158 aa15.73■□□□□ 0.11
SF3B3-208ENST00000567250 MTFR1LQ9H019 292 aa15.73■□□□□ 0.11
SF3B3-208ENST00000567250 ZNF330Q9Y3S2 320 aaPredicted RBP15.73■□□□□ 0.11
SF3B3-208ENST00000567250 A1BGP04217 495 aa15.72■□□□□ 0.11
SF3B3-208ENST00000567250 ZBED9Q6R2W3 1325 aa15.71■□□□□ 0.11
SF3B3-208ENST00000567250 USP42Q9H9J4 1324 aaKnown RBP15.71■□□□□ 0.11
SF3B3-208ENST00000567250 EIF2S2P20042 333 aaKnown RBP15.71■□□□□ 0.11
SF3B3-208ENST00000567250 EIF5P55010 431 aaKnown RBP15.71■□□□□ 0.11
SF3B3-208ENST00000567250 KRT24Q2M2I5 525 aa15.71■□□□□ 0.11
SF3B3-208ENST00000567250 AMIGO3Q86WK7 504 aa15.71■□□□□ 0.11
SF3B3-208ENST00000567250 ARHGEF1Q92888 912 aaKnown RBP15.71■□□□□ 0.11
SF3B3-208ENST00000567250 SPON1Q9HCB6 807 aa15.71■□□□□ 0.11
SF3B3-208ENST00000567250 ANKRD36CQ5JPF3 1778 aa15.7■□□□□ 0.1
SF3B3-208ENST00000567250 ZPR1O75312 459 aa15.7■□□□□ 0.1
SF3B3-208ENST00000567250 TWISTNBQ3B726 338 aaPredicted RBP15.7■□□□□ 0.1
SF3B3-208ENST00000567250 ZBTB7AO95365 584 aa15.69■□□□□ 0.1
SF3B3-208ENST00000567250 POLD1P28340 1107 aa15.69■□□□□ 0.1
SF3B3-208ENST00000567250 C8orf58Q8NAV2 365 aa15.69■□□□□ 0.1
SF3B3-208ENST00000567250 PDGFDQ9GZP0 370 aaPredicted RBP15.69■□□□□ 0.1
SF3B3-208ENST00000567250 DBF4Q9UBU7 674 aaPredicted RBP15.69■□□□□ 0.1
SF3B3-208ENST00000567250 NARFQ9UHQ1 456 aa15.69■□□□□ 0.1
SF3B3-208ENST00000567250 NUP98P52948 1817 aa15.68■□□□□ 0.1
SF3B3-208ENST00000567250 NBPF26B4DH59 902 aa15.68■□□□□ 0.1
SF3B3-208ENST00000567250 MYL6BP14649 208 aa15.68■□□□□ 0.1
SF3B3-208ENST00000567250 CCDC30Q5VVM6 783 aa15.68■□□□□ 0.1
SF3B3-208ENST00000567250 NBPF10Q6P3W6 841 aaKnown RBP15.68■□□□□ 0.1
SF3B3-208ENST00000567250 KIF6Q6ZMV9 814 aa15.68■□□□□ 0.1
SF3B3-208ENST00000567250 DZIP3Q86Y13 1208 aaKnown RBP15.68■□□□□ 0.1
SF3B3-208ENST00000567250 NBPF15Q8N660 670 aa15.68■□□□□ 0.1
SF3B3-208ENST00000567250 SPINK5Q9NQ38 1064 aaPredicted RBP15.68■□□□□ 0.1
SF3B3-208ENST00000567250 DDX21Q9NR30 783 aaKnown RBP eCLIP15.68■□□□□ 0.1
SF3B3-208ENST00000567250 ARFGEF2Q9Y6D5 1785 aa15.67■□□□□ 0.1
SF3B3-208ENST00000567250 ELL2O00472 640 aaPredicted RBP15.67■□□□□ 0.1
SF3B3-208ENST00000567250 PIP4K2AP48426 406 aaPredicted RBP15.67■□□□□ 0.1
SF3B3-208ENST00000567250 EXOSC9Q06265 439 aaKnown RBP15.67■□□□□ 0.1
SF3B3-208ENST00000567250 SLFN5Q08AF3 891 aa15.67■□□□□ 0.1
SF3B3-208ENST00000567250 NLGN1Q8N2Q7 840 aa15.67■□□□□ 0.1
SF3B3-208ENST00000567250 NECTIN2Q92692 538 aa15.67■□□□□ 0.1
SF3B3-208ENST00000567250 STK31Q9BXU1 1019 aa15.67■□□□□ 0.1
SF3B3-208ENST00000567250 ZNF652Q9Y2D9 606 aa15.67■□□□□ 0.1
SF3B3-208ENST00000567250 RGL2O15211 777 aa15.66■□□□□ 0.1
SF3B3-208ENST00000567250 GYS1P13807 737 aa15.66■□□□□ 0.1
SF3B3-208ENST00000567250 USPL1Q5W0Q7 1092 aa15.66■□□□□ 0.1
SF3B3-208ENST00000567250 SMIM5Q71RC9 77 aa15.66■□□□□ 0.1
SF3B3-208ENST00000567250 ARXQ96QS3 562 aa15.66■□□□□ 0.1
SF3B3-208ENST00000567250 HYPKQ9NX55 129 aa15.66■□□□□ 0.1
SF3B3-208ENST00000567250 CHPF2Q9P2E5 772 aa15.66■□□□□ 0.1
SF3B3-208ENST00000567250 MSL1Q68DK7 614 aa15.65■□□□□ 0.1
SF3B3-208ENST00000567250 TSPYL6Q8N831 410 aa15.65■□□□□ 0.1
SF3B3-208ENST00000567250 TBC1D2BQ9UPU7 963 aa15.65■□□□□ 0.1
SF3B3-208ENST00000567250 ATF5Q9Y2D1 282 aaPredicted RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms