RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 ADGRB3O60242 1522 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 GLI2P10070 1586 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 PPRC1Q5VV67 1664 aaKnown RBP13.85□□□□□ -0.19
CDH1-210ENST00000566612 BECN2A8MW95 431 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 DTNBO60941 627 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 ZNF853P0CG23 659 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 RAB3GAP1Q15042 981 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 LRRFIP1Q32MZ4 808 aaKnown RBP13.85□□□□□ -0.19
CDH1-210ENST00000566612 IP6K1Q92551 441 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 TCEANC2Q96MN5 208 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 AKAP4Q5JQC9 854 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 COPS6Q7L5N1 327 aa13.85□□□□□ -0.19
CDH1-210ENST00000566612 ARHGAP31Q2M1Z3 1444 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 GOLGA6L19H0YKK7 550 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 NRDCO43847 1150 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 NBPF7P0C2Y1 421 aaPredicted RBP13.84□□□□□ -0.19
CDH1-210ENST00000566612 NFATC2IPQ8NCF5 419 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 R3HCC1Q9Y3T6 440 aaKnown RBP13.84□□□□□ -0.19
CDH1-210ENST00000566612 LAMC1P11047 1609 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 KCNQ3O43525 872 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 HSP90AA2PQ14568 343 aaPredicted RBP13.84□□□□□ -0.19
CDH1-210ENST00000566612 XAGE3Q8WTP9 111 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 SIRT1Q96EB6 747 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 DDX11Q96FC9 970 aa13.84□□□□□ -0.19
CDH1-210ENST00000566612 CHMLP26374 656 aa13.83□□□□□ -0.19
CDH1-210ENST00000566612 TRDNQ13061 729 aa13.83□□□□□ -0.19
CDH1-210ENST00000566612 RALYLQ86SE5 291 aaKnown RBP13.83□□□□□ -0.19
CDH1-210ENST00000566612 ZBTB3Q9H5J0 574 aa13.83□□□□□ -0.19
CDH1-210ENST00000566612 PDCP20941 246 aa13.83□□□□□ -0.2
CDH1-210ENST00000566612 LIMCH1Q9UPQ0 1083 aa13.83□□□□□ -0.2
CDH1-210ENST00000566612 FAM135BQ49AJ0 1406 aa13.83□□□□□ -0.2
CDH1-210ENST00000566612 RTL1A6NKG5 1358 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 AATKQ6ZMQ8 1374 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 TULP4Q9NRJ4 1543 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 CD2BP2O95400 341 aaKnown RBP13.82□□□□□ -0.2
CDH1-210ENST00000566612 CCDC57Q2TAC2 916 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 KLHL40Q2TBA0 621 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 KSR2Q6VAB6 950 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 INO80Q9ULG1 1556 aaPredicted RBP13.82□□□□□ -0.2
CDH1-210ENST00000566612 PPFIA3O75145 1194 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 SASS6Q6UVJ0 657 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 ANKRD13DQ6ZTN6 518 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 IFNL2Q8IZJ0 200 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 FAM13BQ9NYF5 915 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 CEP126Q9P2H0 1117 aa13.82□□□□□ -0.2
CDH1-210ENST00000566612 SOS1Q07889 1333 aaPredicted RBP13.82□□□□□ -0.2
CDH1-210ENST00000566612 CPA1P15085 419 aa13.81□□□□□ -0.2
CDH1-210ENST00000566612 GRM8O00222 908 aa13.81□□□□□ -0.2
CDH1-210ENST00000566612 NFXL1Q6ZNB6 911 aa13.81□□□□□ -0.2
CDH1-210ENST00000566612 NECAB1Q8N987 351 aa13.81□□□□□ -0.2
CDH1-210ENST00000566612 FMNL2Q96PY5 1086 aa13.81□□□□□ -0.2
CDH1-210ENST00000566612 DDX17Q92841 729 aaKnown RBP13.8□□□□□ -0.2
CDH1-210ENST00000566612 USP44Q9H0E7 712 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 CNNM1Q9NRU3 951 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 ATP7BP35670 1465 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 QRICH2Q9H0J4 1663 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 TTC39AQ5SRH9 613 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 KIF6Q6ZMV9 814 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 RNMTO43148 476 aaKnown RBP13.8□□□□□ -0.2
CDH1-210ENST00000566612 KRT85P78386 507 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 CCDC158Q5M9N0 1113 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 CPLX2Q6PUV4 134 aaKnown RBP13.8□□□□□ -0.2
CDH1-210ENST00000566612 STK11IPQ8N1F8 1099 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 SPC24Q8NBT2 197 aa13.8□□□□□ -0.2
CDH1-210ENST00000566612 KLHDC4Q8TBB5 520 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 EVI5LQ96CN4 794 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 ZSCAN31Q96LW9 406 aaPredicted RBP13.79□□□□□ -0.2
CDH1-210ENST00000566612 BCL11BQ9C0K0 894 aaPredicted RBP13.79□□□□□ -0.2
CDH1-210ENST00000566612 A2ML1A8K2U0 1454 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 KIAA0232Q92628 1395 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 ANKRD1Q15327 319 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 CCDC73Q6ZRK6 1079 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 BRPF1P55201 1214 aaPredicted RBP13.79□□□□□ -0.2
CDH1-210ENST00000566612 CCDC39Q9UFE4 941 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 ZSCAN23Q3MJ62 389 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 KIDINS220Q9ULH0 1771 aa13.79□□□□□ -0.2
CDH1-210ENST00000566612 CAMK4Q16566 473 aa13.78□□□□□ -0.2
CDH1-210ENST00000566612 LINS1Q8NG48 757 aa13.78□□□□□ -0.2
CDH1-210ENST00000566612 SDF4Q9BRK5 362 aa13.78□□□□□ -0.2
CDH1-210ENST00000566612 ANTXR1Q9H6X2 564 aa13.78□□□□□ -0.2
CDH1-210ENST00000566612 LMTK2Q8IWU2 1503 aa13.78□□□□□ -0.2
CDH1-210ENST00000566612 SNRPA1P09661 255 aaKnown RBP13.78□□□□□ -0.2
CDH1-210ENST00000566612 SNRKQ9NRH2 765 aa13.78□□□□□ -0.2
CDH1-210ENST00000566612 TFIP11Q9UBB9 837 aaKnown RBP13.78□□□□□ -0.2
CDH1-210ENST00000566612 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.78□□□□□ -0.2
CDH1-210ENST00000566612 SYNE3Q6ZMZ3 975 aa13.78□□□□□ -0.2
CDH1-210ENST00000566612 DDX46Q7L014 1031 aaKnown RBP13.78□□□□□ -0.2
CDH1-210ENST00000566612 IQGAP1P46940 1657 aa13.77□□□□□ -0.2
CDH1-210ENST00000566612 STX6O43752 255 aa13.77□□□□□ -0.2
CDH1-210ENST00000566612 GJB2P29033 226 aa13.77□□□□□ -0.2
CDH1-210ENST00000566612 CREBRFQ8IUR6 639 aa13.77□□□□□ -0.2
CDH1-210ENST00000566612 ALKQ9UM73 1620 aa13.77□□□□□ -0.21
CDH1-210ENST00000566612 EIF4A1P60842 406 aaKnown RBP13.77□□□□□ -0.21
CDH1-210ENST00000566612 CHAMP1Q96JM3 812 aa13.77□□□□□ -0.21
CDH1-210ENST00000566612 ALDH1L1O75891 902 aa13.77□□□□□ -0.21
CDH1-210ENST00000566612 ZNF592Q92610 1267 aa13.77□□□□□ -0.21
CDH1-210ENST00000566612 PNPLA6Q8IY17 1366 aa13.77□□□□□ -0.21
CDH1-210ENST00000566612 SETBP1Q9Y6X0 1596 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 GOLIM4O00461 696 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 PKP1Q13835 747 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms