RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 C5P01031 1676 aa16.34■□□□□ 0.21
SF3B3-206ENST00000565990 VAMP4O75379 141 aa16.33■□□□□ 0.2
SF3B3-206ENST00000565990 RC3H1Q5TC82 1133 aaKnown RBP16.33■□□□□ 0.2
SF3B3-206ENST00000565990 TSPYL6Q8N831 410 aa16.33■□□□□ 0.2
SF3B3-206ENST00000565990 LINC00116Q8NCU8 138 aa16.33■□□□□ 0.2
SF3B3-206ENST00000565990 EXOSC9Q06265 439 aaKnown RBP16.32■□□□□ 0.2
SF3B3-206ENST00000565990 NUP188Q5SRE5 1749 aa16.32■□□□□ 0.2
SF3B3-206ENST00000565990 STARD3NLO95772 234 aa16.31■□□□□ 0.2
SF3B3-206ENST00000565990 NEFLP07196 543 aa16.31■□□□□ 0.2
SF3B3-206ENST00000565990 INTS5Q6P9B9 1019 aaKnown RBP16.31■□□□□ 0.2
SF3B3-206ENST00000565990 AKT1S1Q96B36 256 aa16.31■□□□□ 0.2
SF3B3-206ENST00000565990 CACNA1FO60840 1977 aa16.31■□□□□ 0.2
SF3B3-206ENST00000565990 LAMB4A4D0S4 1761 aa16.31■□□□□ 0.2
SF3B3-206ENST00000565990 CNTNAP4Q9C0A0 1308 aa16.3■□□□□ 0.2
SF3B3-206ENST00000565990 CHMP4AQ9BY43 222 aa16.3■□□□□ 0.2
SF3B3-206ENST00000565990 C4BP0C0L5 1744 aa16.3■□□□□ 0.2
SF3B3-206ENST00000565990 ELL2O00472 640 aaPredicted RBP16.29■□□□□ 0.2
SF3B3-206ENST00000565990 TWISTNBQ3B726 338 aaPredicted RBP16.29■□□□□ 0.2
SF3B3-206ENST00000565990 ERICH6BQ5W0A0 696 aa16.29■□□□□ 0.2
SF3B3-206ENST00000565990 ERBB4Q15303 1308 aa16.28■□□□□ 0.2
SF3B3-206ENST00000565990 A1BGP04217 495 aa16.28■□□□□ 0.2
SF3B3-206ENST00000565990 CT47B1P0C2W7 299 aaPredicted RBP16.28■□□□□ 0.2
SF3B3-206ENST00000565990 CRKLP46109 303 aaKnown RBP16.28■□□□□ 0.2
SF3B3-206ENST00000565990 UBR3Q6ZT12 1888 aa16.27■□□□□ 0.2
SF3B3-206ENST00000565990 RPS6KA4O75676 772 aa16.27■□□□□ 0.2
SF3B3-206ENST00000565990 PDIA6Q15084 440 aa16.27■□□□□ 0.2
SF3B3-206ENST00000565990 ZNF428Q96B54 188 aa16.27■□□□□ 0.2
SF3B3-206ENST00000565990 CCDC87Q9NVE4 849 aa16.27■□□□□ 0.2
SF3B3-206ENST00000565990 QSER1Q2KHR3 1735 aa16.26■□□□□ 0.19
SF3B3-206ENST00000565990 NBPF26B4DH59 902 aa16.26■□□□□ 0.19
SF3B3-206ENST00000565990 EIF5P55010 431 aaKnown RBP16.26■□□□□ 0.19
SF3B3-206ENST00000565990 SLC15A2Q16348 729 aa16.26■□□□□ 0.19
SF3B3-206ENST00000565990 NBPF14Q5TI25 921 aa16.26■□□□□ 0.19
SF3B3-206ENST00000565990 NBPF10Q6P3W6 841 aaKnown RBP16.26■□□□□ 0.19
SF3B3-206ENST00000565990 NBPF15Q8N660 670 aa16.26■□□□□ 0.19
SF3B3-206ENST00000565990 EIF2S2P20042 333 aaKnown RBP16.25■□□□□ 0.19
SF3B3-206ENST00000565990 IL6STP40189 918 aaPredicted RBP16.25■□□□□ 0.19
SF3B3-206ENST00000565990 ZNF827Q17R98 1081 aa16.25■□□□□ 0.19
SF3B3-206ENST00000565990 HDGFL1Q5TGJ6 251 aa16.25■□□□□ 0.19
SF3B3-206ENST00000565990 CCDC30Q5VVM6 783 aa16.25■□□□□ 0.19
SF3B3-206ENST00000565990 LRP10Q7Z4F1 713 aa16.25■□□□□ 0.19
SF3B3-206ENST00000565990 DDX21Q9NR30 783 aaKnown RBP eCLIP16.25■□□□□ 0.19
SF3B3-206ENST00000565990 DBF4Q9UBU7 674 aaPredicted RBP16.25■□□□□ 0.19
SF3B3-206ENST00000565990 ZBTB1Q9Y2K1 713 aa16.24■□□□□ 0.19
SF3B3-206ENST00000565990 AMIGO3Q86WK7 504 aa16.23■□□□□ 0.19
SF3B3-206ENST00000565990 ANO8Q9HCE9 1232 aaPredicted RBP16.23■□□□□ 0.19
SF3B3-206ENST00000565990 STK32BQ9NY57 414 aa16.23■□□□□ 0.19
SF3B3-206ENST00000565990 TUBGCP6Q96RT7 1819 aa16.23■□□□□ 0.19
SF3B3-206ENST00000565990 ADRA2BP18089 450 aa16.22■□□□□ 0.19
SF3B3-206ENST00000565990 CANXP27824 592 aaKnown RBP16.22■□□□□ 0.19
SF3B3-206ENST00000565990 TRAPPC3LQ5T215 181 aa16.22■□□□□ 0.19
SF3B3-206ENST00000565990 AK7Q96M32 723 aa16.22■□□□□ 0.19
SF3B3-206ENST00000565990 RTCBQ9Y3I0 505 aaKnown RBP16.22■□□□□ 0.19
SF3B3-206ENST00000565990 GNPATO15228 680 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 SSFA2P28290 1259 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 PROSER3Q2NL68 480 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 ALDH1L2Q3SY69 923 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 FLAD1Q8NFF5 587 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 NECTIN2Q92692 538 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 HYPKQ9NX55 129 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 TFCP2L1Q9NZI6 479 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 CHPF2Q9P2E5 772 aa16.21■□□□□ 0.19
SF3B3-206ENST00000565990 SLC4A2P04920 1241 aa16.2■□□□□ 0.18
SF3B3-206ENST00000565990 BRPF1P55201 1214 aaPredicted RBP16.2■□□□□ 0.18
SF3B3-206ENST00000565990 ARHGEF1Q92888 912 aaKnown RBP16.2■□□□□ 0.18
SF3B3-206ENST00000565990 PIP4K2AP48426 406 aaPredicted RBP16.19■□□□□ 0.18
SF3B3-206ENST00000565990 RARSP54136 660 aaKnown RBP16.19■□□□□ 0.18
SF3B3-206ENST00000565990 COL23A1Q86Y22 540 aaPredicted RBP16.19■□□□□ 0.18
SF3B3-206ENST00000565990 PNPLA7Q6ZV29 1317 aa16.19■□□□□ 0.18
SF3B3-206ENST00000565990 A0A087WZG4 1122 aa16.18■□□□□ 0.18
SF3B3-206ENST00000565990 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.18■□□□□ 0.18
SF3B3-206ENST00000565990 RGL2O15211 777 aa16.18■□□□□ 0.18
SF3B3-206ENST00000565990 MYL6BP14649 208 aa16.18■□□□□ 0.18
SF3B3-206ENST00000565990 SMIM5Q71RC9 77 aa16.18■□□□□ 0.18
SF3B3-206ENST00000565990 MRPL50Q8N5N7 158 aaKnown RBP16.18■□□□□ 0.18
SF3B3-206ENST00000565990 SSH1Q8WYL5 1049 aa16.18■□□□□ 0.18
SF3B3-206ENST00000565990 STK31Q9BXU1 1019 aa16.18■□□□□ 0.18
SF3B3-206ENST00000565990 ANXA1P04083 346 aa16.17■□□□□ 0.18
SF3B3-206ENST00000565990 COPS6Q7L5N1 327 aa16.17■□□□□ 0.18
SF3B3-206ENST00000565990 PHAXQ9H814 394 aaKnown RBP16.17■□□□□ 0.18
SF3B3-206ENST00000565990 NARFQ9UHQ1 456 aa16.17■□□□□ 0.18
SF3B3-206ENST00000565990 C4AP0C0L4 1744 aa16.16■□□□□ 0.18
SF3B3-206ENST00000565990 ERVV-1B6SEH8 477 aa16.16■□□□□ 0.18
SF3B3-206ENST00000565990 TCERG1O14776 1098 aaKnown RBP16.16■□□□□ 0.18
SF3B3-206ENST00000565990 G2E3Q7L622 706 aa16.16■□□□□ 0.18
SF3B3-206ENST00000565990 COL15A1P39059 1388 aa16.15■□□□□ 0.18
SF3B3-206ENST00000565990 NUP98P52948 1817 aa16.15■□□□□ 0.18
SF3B3-206ENST00000565990 RFC4P35249 363 aa16.15■□□□□ 0.18
SF3B3-206ENST00000565990 XAGE3Q8WTP9 111 aa16.15■□□□□ 0.18
SF3B3-206ENST00000565990 FKBP8Q14318 412 aa16.14■□□□□ 0.17
SF3B3-206ENST00000565990 R3HDM1Q15032 1099 aaKnown RBP16.14■□□□□ 0.17
SF3B3-206ENST00000565990 CLEC4GQ6UXB4 293 aa16.14■□□□□ 0.17
SF3B3-206ENST00000565990 TTLL7Q6ZT98 887 aa16.14■□□□□ 0.17
SF3B3-206ENST00000565990 ANKRD13DQ6ZTN6 518 aa16.14■□□□□ 0.17
SF3B3-206ENST00000565990 NPM2Q86SE8 214 aaKnown RBP16.14■□□□□ 0.17
SF3B3-206ENST00000565990 DZIP3Q86Y13 1208 aaKnown RBP16.14■□□□□ 0.17
SF3B3-206ENST00000565990 SLC16A10Q8TF71 515 aa16.14■□□□□ 0.17
SF3B3-206ENST00000565990 PDGFDQ9GZP0 370 aaPredicted RBP16.14■□□□□ 0.17
SF3B3-206ENST00000565990 BCL2L12Q9HB09 334 aa16.14■□□□□ 0.17
SF3B3-206ENST00000565990 TBC1D2BQ9UPU7 963 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms