RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SYAP1Q96A49 352 aaPredicted RBP15.96■□□□□ 0.15
CLN3-210ENST00000563874 ZNF830Q96NB3 372 aaPredicted RBP15.96■□□□□ 0.15
CLN3-210ENST00000563874 CNPY2Q9Y2B0 182 aa15.96■□□□□ 0.15
CLN3-210ENST00000563874 CPA1P15085 419 aa15.96■□□□□ 0.15
CLN3-210ENST00000563874 LTKP29376 864 aa15.96■□□□□ 0.15
CLN3-210ENST00000563874 SOS1Q07889 1333 aaPredicted RBP15.96■□□□□ 0.14
CLN3-210ENST00000563874 WDR33Q9C0J8 1336 aaKnown RBP15.96■□□□□ 0.14
CLN3-210ENST00000563874 EIF2S2P20042 333 aaKnown RBP15.96■□□□□ 0.14
CLN3-210ENST00000563874 HSPA4P34932 840 aa15.96■□□□□ 0.14
CLN3-210ENST00000563874 DIP2BQ9P265 1576 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 RGPD1P0DJD0 1748 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 IGSF1Q8N6C5 1336 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.95■□□□□ 0.14
CLN3-210ENST00000563874 HDGFL1Q5TGJ6 251 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 RASEFQ8IZ41 740 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 USHBP1Q8N6Y0 703 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 USP25Q9UHP3 1055 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 SPG7Q9UQ90 795 aa15.95■□□□□ 0.14
CLN3-210ENST00000563874 SBNO1A3KN83 1393 aa15.94■□□□□ 0.14
CLN3-210ENST00000563874 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.94■□□□□ 0.14
CLN3-210ENST00000563874 KDRP35968 1356 aa15.94■□□□□ 0.14
CLN3-210ENST00000563874 TMEM2Q9UHN6 1383 aa15.94■□□□□ 0.14
CLN3-210ENST00000563874 AGLP35573 1532 aa15.94■□□□□ 0.14
CLN3-210ENST00000563874 SRGAP3O43295 1099 aa15.94■□□□□ 0.14
CLN3-210ENST00000563874 NLRP6P59044 892 aa15.94■□□□□ 0.14
CLN3-210ENST00000563874 CWC27Q6UX04 472 aaKnown RBP15.94■□□□□ 0.14
CLN3-210ENST00000563874 TERF1P54274 439 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 RHPN1Q8TCX5 695 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 SNX14Q9Y5W7 946 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 NBPF7P0C2Y1 421 aaPredicted RBP15.93■□□□□ 0.14
CLN3-210ENST00000563874 AK2P54819 239 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 SSH2Q76I76 1423 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 ADAMTS13Q76LX8 1427 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 PI4K2BQ8TCG2 481 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 SSH3Q8TE77 659 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 RPAP1Q9BWH6 1393 aaPredicted RBP15.93■□□□□ 0.14
CLN3-210ENST00000563874 MCM5P33992 734 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 CSPP1Q1MSJ5 1256 aa15.93■□□□□ 0.14
CLN3-210ENST00000563874 SGSM2O43147 1006 aa15.92■□□□□ 0.14
CLN3-210ENST00000563874 FIBPO43427 364 aa15.92■□□□□ 0.14
CLN3-210ENST00000563874 PHF14O94880 888 aa15.92■□□□□ 0.14
CLN3-210ENST00000563874 ANXA1P04083 346 aa15.92■□□□□ 0.14
CLN3-210ENST00000563874 HCLS1P14317 486 aaPredicted RBP15.92■□□□□ 0.14
CLN3-210ENST00000563874 DDX54Q8TDD1 881 aaKnown RBP15.92■□□□□ 0.14
CLN3-210ENST00000563874 TNRQ92752 1358 aa15.92■□□□□ 0.14
CLN3-210ENST00000563874 RAD50Q92878 1312 aa15.92■□□□□ 0.14
CLN3-210ENST00000563874 PLCB2Q00722 1185 aa15.91■□□□□ 0.14
CLN3-210ENST00000563874 TAF7Q15545 349 aaPredicted RBP15.91■□□□□ 0.14
CLN3-210ENST00000563874 DNTTIP2Q5QJE6 756 aaKnown RBP15.91■□□□□ 0.14
CLN3-210ENST00000563874 RUFY3Q7L099 469 aa15.91■□□□□ 0.14
CLN3-210ENST00000563874 C17orf53Q8N3J3 647 aaPredicted RBP15.91■□□□□ 0.14
CLN3-210ENST00000563874 SYT1P21579 422 aa15.91■□□□□ 0.14
CLN3-210ENST00000563874 JARID2Q92833 1246 aaPredicted RBP15.91■□□□□ 0.14
CLN3-210ENST00000563874 TCHHQ07283 1943 aa15.9■□□□□ 0.14
CLN3-210ENST00000563874 LARGE1O95461 756 aa15.9■□□□□ 0.14
CLN3-210ENST00000563874 ZSCAN22P10073 491 aaPredicted RBP15.9■□□□□ 0.14
CLN3-210ENST00000563874 KIAA2012Q0VF49 1180 aa15.9■□□□□ 0.14
CLN3-210ENST00000563874 LSG1Q9H089 658 aaKnown RBP15.9■□□□□ 0.14
CLN3-210ENST00000563874 TTC12Q9H892 705 aaPredicted RBP15.9■□□□□ 0.14
CLN3-210ENST00000563874 AMOTL2Q9Y2J4 779 aa15.9■□□□□ 0.14
CLN3-210ENST00000563874 STX6O43752 255 aa15.9■□□□□ 0.14
CLN3-210ENST00000563874 TTC21AQ8NDW8 1320 aa15.9■□□□□ 0.14
CLN3-210ENST00000563874 CASTP20810 708 aaKnown RBP15.89■□□□□ 0.13
CLN3-210ENST00000563874 TTC14Q96N46 770 aa15.89■□□□□ 0.13
CLN3-210ENST00000563874 TUBGCP6Q96RT7 1819 aa15.89■□□□□ 0.13
CLN3-210ENST00000563874 HOXC9P31274 260 aa15.89■□□□□ 0.13
CLN3-210ENST00000563874 OS9Q13438 667 aaPredicted RBP15.89■□□□□ 0.13
CLN3-210ENST00000563874 CCDC183Q5T5S1 534 aa15.89■□□□□ 0.13
CLN3-210ENST00000563874 C14orf37Q86TY3 774 aa15.89■□□□□ 0.13
CLN3-210ENST00000563874 SMC3Q9UQE7 1217 aa15.89■□□□□ 0.13
CLN3-210ENST00000563874 AOX1Q06278 1338 aa15.89■□□□□ 0.13
CLN3-210ENST00000563874 HTATSF1O43719 755 aaKnown RBP15.88■□□□□ 0.13
CLN3-210ENST00000563874 ADCY5O95622 1261 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 SASS6Q6UVJ0 657 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 CNTROBQ8N137 903 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 IL17RAQ96F46 866 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 MAP3K5Q99683 1374 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 NALCNQ8IZF0 1738 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 PI4KAP2A4QPH2 592 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 RAB11FIP3O75154 756 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 CCDC83Q8IWF9 413 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 PI4KAP1Q8N8J0 262 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 KIF1BPQ96EK5 621 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 LIMCH1Q9UPQ0 1083 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 PTPRUQ92729 1446 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 XRN1Q8IZH2 1706 aaKnown RBP15.88■□□□□ 0.13
CLN3-210ENST00000563874 POLA2Q14181 598 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 GIMAP6Q6P9H5 292 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 TSC1Q92574 1164 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 CHPF2Q9P2E5 772 aa15.88■□□□□ 0.13
CLN3-210ENST00000563874 CEBPAP49715 358 aaPredicted RBP15.87■□□□□ 0.13
CLN3-210ENST00000563874 DHX37Q8IY37 1157 aaKnown RBP15.87■□□□□ 0.13
CLN3-210ENST00000563874 ADCK5Q3MIX3 580 aa15.87■□□□□ 0.13
CLN3-210ENST00000563874 F13A1P00488 732 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 DNM1Q05193 864 aaKnown RBP15.86■□□□□ 0.13
CLN3-210ENST00000563874 PAXIP1Q6ZW49 1069 aaPredicted RBP15.86■□□□□ 0.13
CLN3-210ENST00000563874 KCNQ3O43525 872 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 PTH1RQ03431 593 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 FAM208AQ9UK61 1670 aaKnown RBP15.86■□□□□ 0.13
CLN3-210ENST00000563874 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 144.4 ms