RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GNAI1P63096 354 aa16.96■□□□□ 0.31
NEDD8-208ENST00000560427 INTS5Q6P9B9 1019 aaKnown RBP16.96■□□□□ 0.31
NEDD8-208ENST00000560427 WWC1Q8IX03 1113 aa16.96■□□□□ 0.31
NEDD8-208ENST00000560427 MIER1Q8N108 512 aa16.96■□□□□ 0.31
NEDD8-208ENST00000560427 MIS18AQ9NYP9 233 aa16.96■□□□□ 0.31
NEDD8-208ENST00000560427 IL16Q14005 1332 aa16.96■□□□□ 0.3
NEDD8-208ENST00000560427 PHF14O94880 888 aa16.95■□□□□ 0.3
NEDD8-208ENST00000560427 ZNF853P0CG23 659 aa16.95■□□□□ 0.3
NEDD8-208ENST00000560427 PDGFDQ9GZP0 370 aaPredicted RBP16.95■□□□□ 0.3
NEDD8-208ENST00000560427 SOS1Q07889 1333 aaPredicted RBP16.95■□□□□ 0.3
NEDD8-208ENST00000560427 COL24A1Q17RW2 1714 aa16.94■□□□□ 0.3
NEDD8-208ENST00000560427 GIGYF1O75420 1035 aaPredicted RBP16.94■□□□□ 0.3
NEDD8-208ENST00000560427 TRAPPC3LQ5T215 181 aa16.94■□□□□ 0.3
NEDD8-208ENST00000560427 AMIGO3Q86WK7 504 aa16.94■□□□□ 0.3
NEDD8-208ENST00000560427 ZBTB1Q9Y2K1 713 aa16.94■□□□□ 0.3
NEDD8-208ENST00000560427 MYH14Q7Z406 1995 aaKnown RBP16.94■□□□□ 0.3
NEDD8-208ENST00000560427 MSH5O43196 834 aa16.93■□□□□ 0.3
NEDD8-208ENST00000560427 ZBTB7AO95365 584 aa16.93■□□□□ 0.3
NEDD8-208ENST00000560427 HOXB7P09629 217 aa16.93■□□□□ 0.3
NEDD8-208ENST00000560427 WDR63Q8IWG1 891 aa16.93■□□□□ 0.3
NEDD8-208ENST00000560427 ERBB4Q15303 1308 aa16.93■□□□□ 0.3
NEDD8-208ENST00000560427 COL15A1P39059 1388 aa16.92■□□□□ 0.3
NEDD8-208ENST00000560427 A0A087WZG4 1122 aa16.92■□□□□ 0.3
NEDD8-208ENST00000560427 IL6STP40189 918 aaPredicted RBP16.92■□□□□ 0.3
NEDD8-208ENST00000560427 LAS1LQ9Y4W2 734 aaKnown RBP16.92■□□□□ 0.3
NEDD8-208ENST00000560427 USP16Q9Y5T5 823 aa16.92■□□□□ 0.3
NEDD8-208ENST00000560427 C4AP0C0L4 1744 aa16.92■□□□□ 0.3
NEDD8-208ENST00000560427 RFC4P35249 363 aa16.91■□□□□ 0.3
NEDD8-208ENST00000560427 ARHGEF1Q92888 912 aaKnown RBP16.91■□□□□ 0.3
NEDD8-208ENST00000560427 MBIPQ9NS73 344 aa16.91■□□□□ 0.3
NEDD8-208ENST00000560427 PRAMEF22A3QJZ6 481 aa16.9■□□□□ 0.3
NEDD8-208ENST00000560427 POLD1P28340 1107 aa16.9■□□□□ 0.3
NEDD8-208ENST00000560427 EIF5P55010 431 aaKnown RBP16.9■□□□□ 0.3
NEDD8-208ENST00000560427 SGIP1Q9BQI5 828 aa16.9■□□□□ 0.3
NEDD8-208ENST00000560427 USP42Q9H9J4 1324 aaKnown RBP16.9■□□□□ 0.3
NEDD8-208ENST00000560427 CANXP27824 592 aaKnown RBP16.89■□□□□ 0.29
NEDD8-208ENST00000560427 PTGER2P43116 358 aa16.89■□□□□ 0.29
NEDD8-208ENST00000560427 NPM2Q86SE8 214 aaKnown RBP16.89■□□□□ 0.29
NEDD8-208ENST00000560427 A1BGP04217 495 aa16.88■□□□□ 0.29
NEDD8-208ENST00000560427 NLGN1Q8N2Q7 840 aa16.88■□□□□ 0.29
NEDD8-208ENST00000560427 CHMP4AQ9BY43 222 aa16.88■□□□□ 0.29
NEDD8-208ENST00000560427 ATF5Q9Y2D1 282 aaPredicted RBP16.88■□□□□ 0.29
NEDD8-208ENST00000560427 ZNF521Q96K83 1311 aa16.88■□□□□ 0.29
NEDD8-208ENST00000560427 RGL2O15211 777 aa16.87■□□□□ 0.29
NEDD8-208ENST00000560427 NARFQ9UHQ1 456 aa16.87■□□□□ 0.29
NEDD8-208ENST00000560427 SCN7AQ01118 1682 aa16.86■□□□□ 0.29
NEDD8-208ENST00000560427 ZPR1O75312 459 aa16.86■□□□□ 0.29
NEDD8-208ENST00000560427 GYS1P13807 737 aa16.86■□□□□ 0.29
NEDD8-208ENST00000560427 SMIM5Q71RC9 77 aa16.86■□□□□ 0.29
NEDD8-208ENST00000560427 SALL2Q9Y467 1007 aaPredicted RBP16.86■□□□□ 0.29
NEDD8-208ENST00000560427 NBPF26B4DH59 902 aa16.85■□□□□ 0.29
NEDD8-208ENST00000560427 NBPF10Q6P3W6 841 aaKnown RBP16.85■□□□□ 0.29
NEDD8-208ENST00000560427 NBPF15Q8N660 670 aa16.85■□□□□ 0.29
NEDD8-208ENST00000560427 MYH16Q9H6N6 1097 aa16.85■□□□□ 0.29
NEDD8-208ENST00000560427 PPP1R1BQ9UD71 204 aaPredicted RBP16.85■□□□□ 0.29
NEDD8-208ENST00000560427 SENP3-EIF4A1A0A087X0R7 540 aa16.84■□□□□ 0.29
NEDD8-208ENST00000560427 DUSP27Q5VZP5 1158 aa16.84■□□□□ 0.29
NEDD8-208ENST00000560427 MSL1Q68DK7 614 aa16.84■□□□□ 0.29
NEDD8-208ENST00000560427 ARXQ96QS3 562 aa16.84■□□□□ 0.29
NEDD8-208ENST00000560427 FANCIQ9NVI1 1328 aa16.84■□□□□ 0.29
NEDD8-208ENST00000560427 HDGFL1Q5TGJ6 251 aa16.83■□□□□ 0.28
NEDD8-208ENST00000560427 USPL1Q5W0Q7 1092 aa16.83■□□□□ 0.28
NEDD8-208ENST00000560427 DZIP3Q86Y13 1208 aaKnown RBP16.83■□□□□ 0.28
NEDD8-208ENST00000560427 ZNF330Q9Y3S2 320 aaPredicted RBP16.83■□□□□ 0.28
NEDD8-208ENST00000560427 BCORQ6W2J9 1755 aa16.82■□□□□ 0.28
NEDD8-208ENST00000560427 EIF2S2P20042 333 aaKnown RBP16.82■□□□□ 0.28
NEDD8-208ENST00000560427 GOLGA2Q08379 1002 aa16.82■□□□□ 0.28
NEDD8-208ENST00000560427 KRT24Q2M2I5 525 aa16.82■□□□□ 0.28
NEDD8-208ENST00000560427 TSR2Q969E8 191 aaKnown RBP16.82■□□□□ 0.28
NEDD8-208ENST00000560427 SRP68Q9UHB9 627 aaKnown RBP16.82■□□□□ 0.28
NEDD8-208ENST00000560427 DDX21Q9NR30 783 aaKnown RBP eCLIP16.81■□□□□ 0.28
NEDD8-208ENST00000560427 DBF4Q9UBU7 674 aaPredicted RBP16.81■□□□□ 0.28
NEDD8-208ENST00000560427 ZNF652Q9Y2D9 606 aa16.81■□□□□ 0.28
NEDD8-208ENST00000560427 E9PSI1 815 aa16.8■□□□□ 0.28
NEDD8-208ENST00000560427 CAMTA2O94983 1202 aa16.8■□□□□ 0.28
NEDD8-208ENST00000560427 MMP10P09238 476 aa16.8■□□□□ 0.28
NEDD8-208ENST00000560427 PIP4K2AP48426 406 aaPredicted RBP16.8■□□□□ 0.28
NEDD8-208ENST00000560427 FKBP8Q14318 412 aa16.8■□□□□ 0.28
NEDD8-208ENST00000560427 PDIA6Q15084 440 aa16.8■□□□□ 0.28
NEDD8-208ENST00000560427 CLEC4GQ6UXB4 293 aa16.8■□□□□ 0.28
NEDD8-208ENST00000560427 C8orf58Q8NAV2 365 aa16.8■□□□□ 0.28
NEDD8-208ENST00000560427 KIF6Q6ZMV9 814 aa16.79■□□□□ 0.28
NEDD8-208ENST00000560427 LRP10Q7Z4F1 713 aa16.79■□□□□ 0.28
NEDD8-208ENST00000560427 BCL2L12Q9HB09 334 aa16.79■□□□□ 0.28
NEDD8-208ENST00000560427 TBC1D2BQ9UPU7 963 aa16.79■□□□□ 0.28
NEDD8-208ENST00000560427 ERVV-1B6SEH8 477 aa16.78■□□□□ 0.28
NEDD8-208ENST00000560427 MYL6BP14649 208 aa16.78■□□□□ 0.28
NEDD8-208ENST00000560427 TWISTNBQ3B726 338 aaPredicted RBP16.78■□□□□ 0.28
NEDD8-208ENST00000560427 CCDC30Q5VVM6 783 aa16.78■□□□□ 0.28
NEDD8-208ENST00000560427 PARP3Q9Y6F1 533 aa16.78■□□□□ 0.28
NEDD8-208ENST00000560427 MAP3K15Q6ZN16 1313 aa16.77■□□□□ 0.28
NEDD8-208ENST00000560427 TM4SF1P30408 202 aa16.77■□□□□ 0.28
NEDD8-208ENST00000560427 SPINK5Q9NQ38 1064 aaPredicted RBP16.77■□□□□ 0.28
NEDD8-208ENST00000560427 HYPKQ9NX55 129 aa16.77■□□□□ 0.28
NEDD8-208ENST00000560427 CHPF2Q9P2E5 772 aa16.77■□□□□ 0.28
NEDD8-208ENST00000560427 ELL2O00472 640 aaPredicted RBP16.76■□□□□ 0.27
NEDD8-208ENST00000560427 NFIXQ14938 502 aa16.76■□□□□ 0.27
NEDD8-208ENST00000560427 FHDC1Q9C0D6 1143 aaPredicted RBP16.76■□□□□ 0.27
NEDD8-208ENST00000560427 CD2APQ9Y5K6 639 aa16.76■□□□□ 0.27
NEDD8-208ENST00000560427 SRCAPQ6ZRS2 3230 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms