RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 RC3H1Q5TC82 1133 aaKnown RBP28.17■■■□□ 2.1
SNX1-206ENST00000559389 AK7Q96M32 723 aa28.17■■■□□ 2.1
SNX1-206ENST00000559389 CASZ1Q86V15 1759 aa28.16■■■□□ 2.1
SNX1-206ENST00000559389 STARD3NLO95772 234 aa28.15■■■□□ 2.1
SNX1-206ENST00000559389 MYH16Q9H6N6 1097 aa28.15■■■□□ 2.1
SNX1-206ENST00000559389 CCDC87Q9NVE4 849 aa28.15■■■□□ 2.1
SNX1-206ENST00000559389 USP16Q9Y5T5 823 aa28.15■■■□□ 2.1
SNX1-206ENST00000559389 GNPATO15228 680 aa28.14■■■□□ 2.1
SNX1-206ENST00000559389 INTS5Q6P9B9 1019 aaKnown RBP28.14■■■□□ 2.1
SNX1-206ENST00000559389 ZBED9Q6R2W3 1325 aa28.14■■■□□ 2.09
SNX1-206ENST00000559389 C4AP0C0L4 1744 aa28.13■■■□□ 2.09
SNX1-206ENST00000559389 E9PSI1 815 aa28.12■■■□□ 2.09
SNX1-206ENST00000559389 HOXB7P09629 217 aa28.12■■■□□ 2.09
SNX1-206ENST00000559389 R3HDM1Q15032 1099 aaKnown RBP28.12■■■□□ 2.09
SNX1-206ENST00000559389 AMIGO3Q86WK7 504 aa28.12■■■□□ 2.09
SNX1-206ENST00000559389 TFCP2L1Q9NZI6 479 aa28.12■■■□□ 2.09
SNX1-206ENST00000559389 ZBTB1Q9Y2K1 713 aa28.12■■■□□ 2.09
SNX1-206ENST00000559389 PNPLA7Q6ZV29 1317 aa28.11■■■□□ 2.09
SNX1-206ENST00000559389 SLFN5Q08AF3 891 aa28.1■■■□□ 2.09
SNX1-206ENST00000559389 DUSP27Q5VZP5 1158 aa28.1■■■□□ 2.09
SNX1-206ENST00000559389 RPS6KA4O75676 772 aa28.09■■■□□ 2.09
SNX1-206ENST00000559389 SSFA2P28290 1259 aa28.09■■■□□ 2.09
SNX1-206ENST00000559389 C8orf58Q8NAV2 365 aa28.09■■■□□ 2.09
SNX1-206ENST00000559389 SOS1Q07889 1333 aaPredicted RBP28.09■■■□□ 2.09
SNX1-206ENST00000559389 PSDA5PKW4 1024 aaPredicted RBP28.08■■■□□ 2.09
SNX1-206ENST00000559389 CDCA7LQ96GN5 454 aa28.08■■■□□ 2.09
SNX1-206ENST00000559389 RTCBQ9Y3I0 505 aaKnown RBP28.08■■■□□ 2.09
SNX1-206ENST00000559389 A1BGP04217 495 aa28.07■■■□□ 2.08
SNX1-206ENST00000559389 ERBB4Q15303 1308 aa28.07■■■□□ 2.08
SNX1-206ENST00000559389 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.06■■■□□ 2.08
SNX1-206ENST00000559389 TSPYL6Q8N831 410 aa28.06■■■□□ 2.08
SNX1-206ENST00000559389 PHF14O94880 888 aa28.05■■■□□ 2.08
SNX1-206ENST00000559389 ADRA2BP18089 450 aa28.05■■■□□ 2.08
SNX1-206ENST00000559389 CANXP27824 592 aaKnown RBP28.05■■■□□ 2.08
SNX1-206ENST00000559389 COL15A1P39059 1388 aa28.05■■■□□ 2.08
SNX1-206ENST00000559389 SMIM5Q71RC9 77 aa28.05■■■□□ 2.08
SNX1-206ENST00000559389 TRMT2AQ8IZ69 625 aaKnown RBP28.05■■■□□ 2.08
SNX1-206ENST00000559389 FLAD1Q8NFF5 587 aa28.05■■■□□ 2.08
SNX1-206ENST00000559389 SCN7AQ01118 1682 aa28.04■■■□□ 2.08
SNX1-206ENST00000559389 NBPF26B4DH59 902 aa28.04■■■□□ 2.08
SNX1-206ENST00000559389 EXOSC9Q06265 439 aaKnown RBP28.04■■■□□ 2.08
SNX1-206ENST00000559389 NBPF10Q6P3W6 841 aaKnown RBP28.04■■■□□ 2.08
SNX1-206ENST00000559389 NBPF15Q8N660 670 aa28.04■■■□□ 2.08
SNX1-206ENST00000559389 ELL2O00472 640 aaPredicted RBP28.03■■■□□ 2.08
SNX1-206ENST00000559389 IL6STP40189 918 aaPredicted RBP28.03■■■□□ 2.08
SNX1-206ENST00000559389 TWISTNBQ3B726 338 aaPredicted RBP28.03■■■□□ 2.08
SNX1-206ENST00000559389 HDGFL1Q5TGJ6 251 aa28.03■■■□□ 2.08
SNX1-206ENST00000559389 COL23A1Q86Y22 540 aaPredicted RBP28.03■■■□□ 2.08
SNX1-206ENST00000559389 EIF2S2P20042 333 aaKnown RBP28.02■■■□□ 2.08
SNX1-206ENST00000559389 PIP4K2AP48426 406 aaPredicted RBP28.02■■■□□ 2.08
SNX1-206ENST00000559389 EIF5P55010 431 aaKnown RBP28.02■■■□□ 2.08
SNX1-206ENST00000559389 PDGFDQ9GZP0 370 aaPredicted RBP28.02■■■□□ 2.08
SNX1-206ENST00000559389 BCORQ6W2J9 1755 aa28.01■■■□□ 2.07
SNX1-206ENST00000559389 PDIA6Q15084 440 aa27.99■■■□□ 2.07
SNX1-206ENST00000559389 TRAPPC3LQ5T215 181 aa27.99■■■□□ 2.07
SNX1-206ENST00000559389 NECTIN2Q92692 538 aa27.99■■■□□ 2.07
SNX1-206ENST00000559389 ARHGEF1Q92888 912 aaKnown RBP27.99■■■□□ 2.07
SNX1-206ENST00000559389 COL24A1Q17RW2 1714 aa27.98■■■□□ 2.07
SNX1-206ENST00000559389 LRP10Q7Z4F1 713 aa27.97■■■□□ 2.07
SNX1-206ENST00000559389 CHPF2Q9P2E5 772 aa27.97■■■□□ 2.07
SNX1-206ENST00000559389 ZNF330Q9Y3S2 320 aaPredicted RBP27.97■■■□□ 2.07
SNX1-206ENST00000559389 VAMP4O75379 141 aa27.96■■■□□ 2.07
SNX1-206ENST00000559389 PROSER3Q2NL68 480 aa27.96■■■□□ 2.07
SNX1-206ENST00000559389 DDX21Q9NR30 783 aaKnown RBP eCLIP27.96■■■□□ 2.07
SNX1-206ENST00000559389 USP42Q9H9J4 1324 aaKnown RBP27.95■■■□□ 2.07
SNX1-206ENST00000559389 MYL6BP14649 208 aa27.95■■■□□ 2.06
SNX1-206ENST00000559389 CHMP4AQ9BY43 222 aa27.95■■■□□ 2.06
SNX1-206ENST00000559389 DBF4Q9UBU7 674 aaPredicted RBP27.95■■■□□ 2.06
SNX1-206ENST00000559389 A0A087WZG4 1122 aa27.94■■■□□ 2.06
SNX1-206ENST00000559389 MSH5O43196 834 aa27.94■■■□□ 2.06
SNX1-206ENST00000559389 RFC4P35249 363 aa27.94■■■□□ 2.06
SNX1-206ENST00000559389 CCDC30Q5VVM6 783 aa27.94■■■□□ 2.06
SNX1-206ENST00000559389 SLC16A10Q8TF71 515 aa27.94■■■□□ 2.06
SNX1-206ENST00000559389 ANXA1P04083 346 aa27.93■■■□□ 2.06
SNX1-206ENST00000559389 SRP68Q9UHB9 627 aaKnown RBP27.92■■■□□ 2.06
SNX1-206ENST00000559389 NPM2Q86SE8 214 aaKnown RBP27.91■■■□□ 2.06
SNX1-206ENST00000559389 DZIP3Q86Y13 1208 aaKnown RBP27.91■■■□□ 2.06
SNX1-206ENST00000559389 YTHDC1Q96MU7 727 aaKnown RBP27.91■■■□□ 2.06
SNX1-206ENST00000559389 NARFQ9UHQ1 456 aa27.91■■■□□ 2.06
SNX1-206ENST00000559389 MTFR1LQ9H019 292 aa27.9■■■□□ 2.06
SNX1-206ENST00000559389 ZBTB7AO95365 584 aa27.89■■■□□ 2.06
SNX1-206ENST00000559389 TBC1D2BQ9UPU7 963 aa27.89■■■□□ 2.06
SNX1-206ENST00000559389 CAMTA2O94983 1202 aa27.88■■■□□ 2.05
SNX1-206ENST00000559389 CT47B1P0C2W7 299 aaPredicted RBP27.88■■■□□ 2.05
SNX1-206ENST00000559389 GYS1P13807 737 aa27.88■■■□□ 2.05
SNX1-206ENST00000559389 STK31Q9BXU1 1019 aa27.88■■■□□ 2.05
SNX1-206ENST00000559389 HYPKQ9NX55 129 aa27.88■■■□□ 2.05
SNX1-206ENST00000559389 LRP5O75197 1615 aa27.88■■■□□ 2.05
SNX1-206ENST00000559389 TCERG1O14776 1098 aaKnown RBP27.87■■■□□ 2.05
SNX1-206ENST00000559389 ZPR1O75312 459 aa27.87■■■□□ 2.05
SNX1-206ENST00000559389 USPL1Q5W0Q7 1092 aa27.87■■■□□ 2.05
SNX1-206ENST00000559389 CACNA1FO60840 1977 aa27.87■■■□□ 2.05
SNX1-206ENST00000559389 MSL1Q68DK7 614 aa27.86■■■□□ 2.05
SNX1-206ENST00000559389 TTLL7Q6ZT98 887 aa27.86■■■□□ 2.05
SNX1-206ENST00000559389 XAGE3Q8WTP9 111 aa27.86■■■□□ 2.05
SNX1-206ENST00000559389 BCL2L12Q9HB09 334 aa27.86■■■□□ 2.05
SNX1-206ENST00000559389 ZNF428Q96B54 188 aa27.85■■■□□ 2.05
SNX1-206ENST00000559389 MAP3K15Q6ZN16 1313 aa27.85■■■□□ 2.05
SNX1-206ENST00000559389 ARFGEF2Q9Y6D5 1785 aa27.84■■■□□ 2.05
SNX1-206ENST00000559389 RGL2O15211 777 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 337.5 ms