RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 PLEKHG5O94827 1062 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 HSP90AB2PQ58FF8 381 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 C14orf37Q86TY3 774 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 TMEM87AQ8NBN3 555 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 ADGRL3Q9HAR2 1447 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 FMN2Q9NZ56 1722 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 LETM1O95202 739 aaPredicted RBP19.72■□□□□ 0.75
SHMT2-232ENST00000557487 G2E3Q7L622 706 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 ANO2Q9NQ90 1003 aa19.72■□□□□ 0.75
SHMT2-232ENST00000557487 RAB11FIP3O75154 756 aa19.71■□□□□ 0.75
SHMT2-232ENST00000557487 CADPS2Q86UW7 1296 aa19.71■□□□□ 0.75
SHMT2-232ENST00000557487 EXOC6BQ9Y2D4 811 aa19.71■□□□□ 0.75
SHMT2-232ENST00000557487 FAM208AQ9UK61 1670 aaKnown RBP19.71■□□□□ 0.75
SHMT2-232ENST00000557487 MAP3K19Q56UN5 1328 aa19.71■□□□□ 0.75
SHMT2-232ENST00000557487 F6X3S4 739 aa19.7■□□□□ 0.74
SHMT2-232ENST00000557487 FLIIQ13045 1269 aa19.7■□□□□ 0.74
SHMT2-232ENST00000557487 MTHFSDQ2M296 383 aaKnown RBP19.7■□□□□ 0.74
SHMT2-232ENST00000557487 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.7■□□□□ 0.74
SHMT2-232ENST00000557487 DYNC1I1O14576 645 aa19.7■□□□□ 0.74
SHMT2-232ENST00000557487 R3HCC1Q9Y3T6 440 aaKnown RBP19.7■□□□□ 0.74
SHMT2-232ENST00000557487 IGSF1Q8N6C5 1336 aa19.69■□□□□ 0.74
SHMT2-232ENST00000557487 PIP4K2BP78356 416 aa19.69■□□□□ 0.74
SHMT2-232ENST00000557487 TRIM6-TRIM34B2RNG4 842 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 ATF3P18847 181 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 HSPA4P34932 840 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 SASS6Q6UVJ0 657 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 VSIG10Q8N0Z9 540 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 SLAIN2Q9P270 581 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 NSFL1CQ9UNZ2 370 aaKnown RBP19.68■□□□□ 0.74
SHMT2-232ENST00000557487 RILPL2Q969X0 211 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 PALD1Q9ULE6 856 aa19.68■□□□□ 0.74
SHMT2-232ENST00000557487 FKBP5Q13451 457 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-232ENST00000557487 CHMP4AQ9BY43 222 aa19.67■□□□□ 0.74
SHMT2-232ENST00000557487 XPCQ01831 940 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-232ENST00000557487 KIAA2012Q0VF49 1180 aa19.66■□□□□ 0.74
SHMT2-232ENST00000557487 SSH3Q8TE77 659 aa19.66■□□□□ 0.74
SHMT2-232ENST00000557487 ATP6V1DQ9Y5K8 247 aa19.66■□□□□ 0.74
SHMT2-232ENST00000557487 PNMA6EA0A0J9YXQ4 647 aa19.65■□□□□ 0.74
SHMT2-232ENST00000557487 UQCRHLA0A096LP55 91 aa19.64■□□□□ 0.74
SHMT2-232ENST00000557487 PTMAP06454 111 aaKnown RBP19.64■□□□□ 0.74
SHMT2-232ENST00000557487 UQCRHP07919 91 aa19.64■□□□□ 0.74
SHMT2-232ENST00000557487 CCDC183Q5T5S1 534 aa19.64■□□□□ 0.74
SHMT2-232ENST00000557487 MIS18AQ9NYP9 233 aa19.64■□□□□ 0.74
SHMT2-232ENST00000557487 UBTFL1P0CB47 393 aaPredicted RBP19.64■□□□□ 0.73
SHMT2-232ENST00000557487 RAD50Q92878 1312 aa19.64■□□□□ 0.73
SHMT2-232ENST00000557487 GNAT3A8MTJ3 354 aa19.63■□□□□ 0.73
SHMT2-232ENST00000557487 FOXD4L5Q5VV16 416 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-232ENST00000557487 FOXD4L4Q8WXT5 416 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-232ENST00000557487 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-232ENST00000557487 RPAP1Q9BWH6 1393 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-232ENST00000557487 MST1RQ04912 1400 aa19.63■□□□□ 0.73
SHMT2-232ENST00000557487 FOXO3O43524 673 aa19.63■□□□□ 0.73
SHMT2-232ENST00000557487 PDIA4P13667 645 aaKnown RBP19.63■□□□□ 0.73
SHMT2-232ENST00000557487 USP48Q86UV5 1035 aa19.63■□□□□ 0.73
SHMT2-232ENST00000557487 LRRFIP2Q9Y608 721 aaKnown RBP19.63■□□□□ 0.73
SHMT2-232ENST00000557487 HSP90AB4PQ58FF6 505 aa19.62■□□□□ 0.73
SHMT2-232ENST00000557487 ZMYND15Q9H091 742 aa19.62■□□□□ 0.73
SHMT2-232ENST00000557487 SGSM2O43147 1006 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 POLA2Q14181 598 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 TSHZ3Q63HK5 1081 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 RNF214Q8ND24 703 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 EYA1Q99502 592 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 USP44Q9H0E7 712 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 UBE2HP62256 183 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 CNTROBQ8N137 903 aa19.61■□□□□ 0.73
SHMT2-232ENST00000557487 MAP3K5Q99683 1374 aa19.6■□□□□ 0.73
SHMT2-232ENST00000557487 ZSCAN22P10073 491 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-232ENST00000557487 AMPHP49418 695 aa19.6■□□□□ 0.73
SHMT2-232ENST00000557487 KIF1BPQ96EK5 621 aa19.6■□□□□ 0.73
SHMT2-232ENST00000557487 CHAMP1Q96JM3 812 aa19.6■□□□□ 0.73
SHMT2-232ENST00000557487 HSPA1LP34931 641 aa19.59■□□□□ 0.73
SHMT2-232ENST00000557487 TAF7Q15545 349 aaPredicted RBP19.59■□□□□ 0.73
SHMT2-232ENST00000557487 PRIMPOLQ96LW4 560 aa19.59■□□□□ 0.73
SHMT2-232ENST00000557487 TTC14Q96N46 770 aa19.59■□□□□ 0.73
SHMT2-232ENST00000557487 UPF3BQ9BZI7 483 aaKnown RBP19.59■□□□□ 0.73
SHMT2-232ENST00000557487 LIMCH1Q9UPQ0 1083 aa19.59■□□□□ 0.73
SHMT2-232ENST00000557487 USP42Q9H9J4 1324 aaKnown RBP19.59■□□□□ 0.73
SHMT2-232ENST00000557487 ROBO1Q9Y6N7 1651 aa19.59■□□□□ 0.73
SHMT2-232ENST00000557487 HMGN5P82970 282 aaKnown RBP19.59■□□□□ 0.73
SHMT2-232ENST00000557487 PKNOX2Q96KN3 472 aa19.59■□□□□ 0.73
SHMT2-232ENST00000557487 UNC5CLQ8IV45 518 aa19.58■□□□□ 0.72
SHMT2-232ENST00000557487 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.58■□□□□ 0.723e-7■■□□□ 13.1
SHMT2-232ENST00000557487 TTC41PQ6P2S7 1318 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 TPM3P06753 285 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 HOXB7P09629 217 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 PI4K2BQ8TCG2 481 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 RHPN1Q8TCX5 695 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 PIBF1Q8WXW3 757 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 C1orf167Q5SNV9 1468 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 CRYBG1Q9Y4K1 1723 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 GADD45BO75293 160 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-232ENST00000557487 RUFY2Q8WXA3 655 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 ZSCAN31Q96LW9 406 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-232ENST00000557487 LSG1Q9H089 658 aaKnown RBP19.57■□□□□ 0.72
SHMT2-232ENST00000557487 FAM13BQ9NYF5 915 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 SNX14Q9Y5W7 946 aa19.57■□□□□ 0.72
SHMT2-232ENST00000557487 STX6O43752 255 aa19.56■□□□□ 0.72
SHMT2-232ENST00000557487 BRINP3Q76B58 766 aa19.56■□□□□ 0.72
SHMT2-232ENST00000557487 NOL8Q76FK4 1167 aaKnown RBP19.56■□□□□ 0.72
SHMT2-232ENST00000557487 USP54Q70EL1 1684 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms