RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 HEG1Q9ULI3 1381 aa22.24■■□□□ 1.15
SHOX-204ENST00000554971 ANP32AP39687 249 aaKnown RBP22.23■■□□□ 1.15
SHOX-204ENST00000554971 SLC27A3Q5K4L6 730 aa22.23■■□□□ 1.15
SHOX-204ENST00000554971 IL16Q14005 1332 aa22.23■■□□□ 1.15
SHOX-204ENST00000554971 PRAMEF22A3QJZ6 481 aa22.23■■□□□ 1.15
SHOX-204ENST00000554971 ATP6V1AP38606 617 aa22.23■■□□□ 1.15
SHOX-204ENST00000554971 EIF4A1P60842 406 aaKnown RBP22.23■■□□□ 1.15
SHOX-204ENST00000554971 CALD1Q05682 793 aaKnown RBP22.23■■□□□ 1.15
SHOX-204ENST00000554971 PLIN1O60240 522 aa22.22■■□□□ 1.15
SHOX-204ENST00000554971 C4BP0C0L5 1744 aa22.22■■□□□ 1.15
SHOX-204ENST00000554971 TUBGCP6Q96RT7 1819 aa22.22■■□□□ 1.15
SHOX-204ENST00000554971 GNAI1P63096 354 aa22.21■■□□□ 1.15
SHOX-204ENST00000554971 KRT24Q2M2I5 525 aa22.21■■□□□ 1.15
SHOX-204ENST00000554971 TSR2Q969E8 191 aaKnown RBP22.21■■□□□ 1.15
SHOX-204ENST00000554971 FMNL2Q96PY5 1086 aa22.21■■□□□ 1.15
SHOX-204ENST00000554971 LINC00116Q8NCU8 138 aa22.21■■□□□ 1.15
SHOX-204ENST00000554971 ANO8Q9HCE9 1232 aaPredicted RBP22.2■■□□□ 1.14
SHOX-204ENST00000554971 LAMB4A4D0S4 1761 aa22.2■■□□□ 1.14
SHOX-204ENST00000554971 DNAJC10Q8IXB1 793 aa22.19■■□□□ 1.14
SHOX-204ENST00000554971 VSIG10Q8N0Z9 540 aa22.19■■□□□ 1.14
SHOX-204ENST00000554971 UBR3Q6ZT12 1888 aa22.19■■□□□ 1.14
SHOX-204ENST00000554971 CENPQQ7L2Z9 268 aaPredicted RBP22.18■■□□□ 1.14
SHOX-204ENST00000554971 GIGYF1O75420 1035 aaPredicted RBP22.18■■□□□ 1.14
SHOX-204ENST00000554971 ZNF827Q17R98 1081 aa22.17■■□□□ 1.14
SHOX-204ENST00000554971 IPO9Q96P70 1041 aaKnown RBP22.17■■□□□ 1.14
SHOX-204ENST00000554971 AMIGO3Q86WK7 504 aa22.16■■□□□ 1.14
SHOX-204ENST00000554971 USP16Q9Y5T5 823 aa22.16■■□□□ 1.14
SHOX-204ENST00000554971 SNRPA1P09661 255 aaKnown RBP22.15■■□□□ 1.14
SHOX-204ENST00000554971 CYP19A1P11511 503 aaPredicted RBP22.15■■□□□ 1.14
SHOX-204ENST00000554971 AKT1S1Q96B36 256 aa22.15■■□□□ 1.14
SHOX-204ENST00000554971 NOP58Q9Y2X3 529 aaKnown RBP22.15■■□□□ 1.14
SHOX-204ENST00000554971 KDM2BQ8NHM5 1336 aa22.15■■□□□ 1.14
SHOX-204ENST00000554971 BACH2Q9BYV9 841 aa22.14■■□□□ 1.14
SHOX-204ENST00000554971 PDE4AP27815 886 aa22.14■■□□□ 1.13
SHOX-204ENST00000554971 PDE3AQ14432 1141 aa22.14■■□□□ 1.13
SHOX-204ENST00000554971 C8orf58Q8NAV2 365 aa22.14■■□□□ 1.13
SHOX-204ENST00000554971 AAMPQ13685 434 aa22.13■■□□□ 1.13
SHOX-204ENST00000554971 TSPYL6Q8N831 410 aa22.13■■□□□ 1.13
SHOX-204ENST00000554971 CRKLP46109 303 aaKnown RBP22.12■■□□□ 1.13
SHOX-204ENST00000554971 C20orf194Q5TEA3 1177 aa22.12■■□□□ 1.13
SHOX-204ENST00000554971 GOLGB1Q14789 3259 aaKnown RBP22.12■■□□□ 1.13
SHOX-204ENST00000554971 QSER1Q2KHR3 1735 aa22.12■■□□□ 1.13
SHOX-204ENST00000554971 INTS5Q6P9B9 1019 aaKnown RBP22.12■■□□□ 1.13
SHOX-204ENST00000554971 SMIM5Q71RC9 77 aa22.12■■□□□ 1.13
SHOX-204ENST00000554971 CNTNAP4Q9C0A0 1308 aa22.11■■□□□ 1.13
SHOX-204ENST00000554971 ELL2O00472 640 aaPredicted RBP22.1■■□□□ 1.13
SHOX-204ENST00000554971 SLC15A2Q16348 729 aa22.1■■□□□ 1.13
SHOX-204ENST00000554971 MYH16Q9H6N6 1097 aa22.1■■□□□ 1.13
SHOX-204ENST00000554971 TEX13AQ9BXU3 409 aaPredicted RBP22.1■■□□□ 1.13
SHOX-204ENST00000554971 ZBTB1Q9Y2K1 713 aa22.1■■□□□ 1.13
SHOX-204ENST00000554971 A1BGP04217 495 aa22.09■■□□□ 1.13
SHOX-204ENST00000554971 RC3H1Q5TC82 1133 aaKnown RBP22.09■■□□□ 1.13
SHOX-204ENST00000554971 C4AP0C0L4 1744 aa22.08■■□□□ 1.13
SHOX-204ENST00000554971 STARD3NLO95772 234 aa22.08■■□□□ 1.13
SHOX-204ENST00000554971 PIP4K2AP48426 406 aaPredicted RBP22.08■■□□□ 1.13
SHOX-204ENST00000554971 EXOSC9Q06265 439 aaKnown RBP22.08■■□□□ 1.13
SHOX-204ENST00000554971 CCDC87Q9NVE4 849 aa22.08■■□□□ 1.12
SHOX-204ENST00000554971 NBPF26B4DH59 902 aa22.07■■□□□ 1.12
SHOX-204ENST00000554971 GNPATO15228 680 aa22.07■■□□□ 1.12
SHOX-204ENST00000554971 NBPF14Q5TI25 921 aa22.07■■□□□ 1.12
SHOX-204ENST00000554971 NBPF10Q6P3W6 841 aaKnown RBP22.07■■□□□ 1.12
SHOX-204ENST00000554971 NBPF15Q8N660 670 aa22.07■■□□□ 1.12
SHOX-204ENST00000554971 PDGFDQ9GZP0 370 aaPredicted RBP22.07■■□□□ 1.12
SHOX-204ENST00000554971 HOXB7P09629 217 aa22.06■■□□□ 1.12
SHOX-204ENST00000554971 EIF2S2P20042 333 aaKnown RBP22.06■■□□□ 1.12
SHOX-204ENST00000554971 AK7Q96M32 723 aa22.06■■□□□ 1.12
SHOX-204ENST00000554971 STK32BQ9NY57 414 aa22.06■■□□□ 1.12
SHOX-204ENST00000554971 ZBTB47Q9UFB7 747 aaPredicted RBP22.06■■□□□ 1.12
SHOX-204ENST00000554971 PNPLA7Q6ZV29 1317 aa22.05■■□□□ 1.12
SHOX-204ENST00000554971 R3HDM1Q15032 1099 aaKnown RBP22.05■■□□□ 1.12
SHOX-204ENST00000554971 PDIA6Q15084 440 aa22.05■■□□□ 1.12
SHOX-204ENST00000554971 NECTIN2Q92692 538 aa22.05■■□□□ 1.12
SHOX-204ENST00000554971 TFCP2L1Q9NZI6 479 aa22.05■■□□□ 1.12
SHOX-204ENST00000554971 CASZ1Q86V15 1759 aa22.05■■□□□ 1.12
SHOX-204ENST00000554971 TWISTNBQ3B726 338 aaPredicted RBP22.04■■□□□ 1.12
SHOX-204ENST00000554971 CANXP27824 592 aaKnown RBP22.04■■□□□ 1.12
SHOX-204ENST00000554971 SOS1Q07889 1333 aaPredicted RBP22.03■■□□□ 1.12
SHOX-204ENST00000554971 PSDA5PKW4 1024 aaPredicted RBP22.03■■□□□ 1.12
SHOX-204ENST00000554971 VAMP4O75379 141 aa22.03■■□□□ 1.12
SHOX-204ENST00000554971 RPS6KA4O75676 772 aa22.03■■□□□ 1.12
SHOX-204ENST00000554971 CT47B1P0C2W7 299 aaPredicted RBP22.03■■□□□ 1.12
SHOX-204ENST00000554971 PROSER3Q2NL68 480 aa22.03■■□□□ 1.12
SHOX-204ENST00000554971 LRP10Q7Z4F1 713 aa22.03■■□□□ 1.12
SHOX-204ENST00000554971 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.02■■□□□ 1.12
SHOX-204ENST00000554971 HDGFL1Q5TGJ6 251 aa22.02■■□□□ 1.12
SHOX-204ENST00000554971 CACNA1FO60840 1977 aa22.02■■□□□ 1.12
SHOX-204ENST00000554971 PHF14O94880 888 aa22.02■■□□□ 1.11
SHOX-204ENST00000554971 ANXA1P04083 346 aa22.02■■□□□ 1.11
SHOX-204ENST00000554971 EIF5P55010 431 aaKnown RBP22.02■■□□□ 1.11
SHOX-204ENST00000554971 RTCBQ9Y3I0 505 aaKnown RBP22.02■■□□□ 1.11
SHOX-204ENST00000554971 BCAR3O75815 825 aa22.01■■□□□ 1.11
SHOX-204ENST00000554971 HMGB2P26583 209 aaKnown RBP22.01■■□□□ 1.11
SHOX-204ENST00000554971 SSFA2P28290 1259 aa22.01■■□□□ 1.11
SHOX-204ENST00000554971 COL23A1Q86Y22 540 aaPredicted RBP22.01■■□□□ 1.11
SHOX-204ENST00000554971 UTRNP46939 3433 aa22■■□□□ 1.11
SHOX-204ENST00000554971 CHPF2Q9P2E5 772 aa22■■□□□ 1.11
SHOX-204ENST00000554971 COL15A1P39059 1388 aa22■■□□□ 1.11
SHOX-204ENST00000554971 IL6STP40189 918 aaPredicted RBP22■■□□□ 1.11
SHOX-204ENST00000554971 ARHGEF1Q92888 912 aaKnown RBP21.99■■□□□ 1.11
SHOX-204ENST00000554971 MYL6BP14649 208 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms