RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 NRKQ7Z2Y5 1582 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 AKAP12Q02952 1782 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 CRB1P82279 1406 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 PEAK1Q9H792 1746 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 RBM10P98175 930 aaKnown RBP6.63□□□□□ -1.35
LIMA1-212ENST00000552491 HS1BP3Q53T59 392 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 SLC4A10Q6U841 1118 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 LRSAM1Q6UWE0 723 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 C3orf67Q6ZVT6 689 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 NOL8Q76FK4 1167 aaKnown RBP6.63□□□□□ -1.35
LIMA1-212ENST00000552491 RNF214Q8ND24 703 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 IL25Q9H293 177 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 R3HCC1Q9Y3T6 440 aaKnown RBP6.63□□□□□ -1.35
LIMA1-212ENST00000552491 KIAA0232Q92628 1395 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 PTPRCP08575 1304 aa6.62□□□□□ -1.35
LIMA1-212ENST00000552491 RIMS1Q86UR5 1692 aaKnown RBP6.62□□□□□ -1.35
LIMA1-212ENST00000552491 ZNF500O60304 480 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-212ENST00000552491 HAP1P54257 671 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-212ENST00000552491 FAM69CQ0P6D2 419 aa6.62□□□□□ -1.35
LIMA1-212ENST00000552491 CASC1Q6TDU7 716 aa6.62□□□□□ -1.35
LIMA1-212ENST00000552491 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.62□□□□□ -1.35
LIMA1-212ENST00000552491 TSPOAP1O95153 1857 aa6.62□□□□□ -1.35
LIMA1-212ENST00000552491 BRD1O95696 1058 aa6.62□□□□□ -1.35
LIMA1-212ENST00000552491 UNC5CLQ8IV45 518 aa6.62□□□□□ -1.35
LIMA1-212ENST00000552491 ESYT1Q9BSJ8 1104 aa6.62□□□□□ -1.35
LIMA1-212ENST00000552491 PNMA6EA0A0J9YXQ4 647 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 CUL4AQ13619 759 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 FOXD4L6Q3SYB3 417 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-212ENST00000552491 FOXD4L3Q6VB84 417 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-212ENST00000552491 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-212ENST00000552491 GDPD2Q9HCC8 539 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 ZKSCAN5Q9Y2L8 839 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 RGPD1P0DJD0 1748 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 NUTM2FA1L443 756 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 SOX12O15370 315 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 GADD45BO75293 160 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-212ENST00000552491 TERF1P54274 439 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 UPF3BQ9BZI7 483 aaKnown RBP6.61□□□□□ -1.35
LIMA1-212ENST00000552491 PDCL3Q9H2J4 239 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 ITSN1Q15811 1721 aa6.61□□□□□ -1.35
LIMA1-212ENST00000552491 CHMLP26374 656 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 MTHFSDQ2M296 383 aaKnown RBP6.6□□□□□ -1.35
LIMA1-212ENST00000552491 DCAF8Q5TAQ9 597 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 PKNOX2Q96KN3 472 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 MAP3K19Q56UN5 1328 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 TTC21BQ7Z4L5 1316 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 OVOS2A0A0J9YW53 1432 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 OVOS2Q6IE36 1432 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 MPNDQ8N594 471 aa6.6□□□□□ -1.35
LIMA1-212ENST00000552491 SPATA31D1Q6ZQQ2 1576 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 HMMRO75330 724 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 MLECQ14165 292 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 RILPL2Q969X0 211 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 ANO2Q9NQ90 1003 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 TSPYL4Q9UJ04 414 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 GNAI2P04899 355 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 MX1P20591 662 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 CCT4P50991 539 aaKnown RBP6.59□□□□□ -1.35
LIMA1-212ENST00000552491 NECTIN2Q92692 538 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 LRRCC1Q9C099 1032 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 FAM13BQ9NYF5 915 aa6.59□□□□□ -1.35
LIMA1-212ENST00000552491 ACEP12821 1306 aa6.59□□□□□ -1.36
LIMA1-212ENST00000552491 ROBO2Q9HCK4 1378 aa6.59□□□□□ -1.36
LIMA1-212ENST00000552491 UQCRHLA0A096LP55 91 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 TRIM6-TRIM34B2RNG4 842 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 DTNBO60941 627 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 MBD3O95983 291 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 UQCRHP07919 91 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 JARID2Q92833 1246 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-212ENST00000552491 XRN1Q8IZH2 1706 aaKnown RBP6.58□□□□□ -1.36
LIMA1-212ENST00000552491 TECPR2O15040 1411 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 ZBTB7CA1YPR0 619 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 ATP8B2P98198 1209 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 USP48Q86UV5 1035 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 INTS4Q96HW7 963 aaKnown RBP6.58□□□□□ -1.36
LIMA1-212ENST00000552491 IL1RAPL2Q9NP60 686 aa6.58□□□□□ -1.36
LIMA1-212ENST00000552491 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-212ENST00000552491 NALCNQ8IZF0 1738 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 MAP4K4O95819 1239 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 MCM5P33992 734 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 MCM2P49736 904 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 FLIIQ13045 1269 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 IL17RAQ96F46 866 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 ZNF830Q96NB3 372 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 LARP6Q9BRS8 491 aaKnown RBP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 TSPY26PQ9H489 355 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 CCDC39Q9UFE4 941 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 STAP2Q9UGK3 403 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 LRRFIP2Q9Y608 721 aaKnown RBP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 RPAP1Q9BWH6 1393 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 CEP170BQ9Y4F5 1589 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 ANAPC15P60006 121 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 FKBP5Q13451 457 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-212ENST00000552491 TPRNQ4KMQ1 711 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 SRCIN1Q9C0H9 1055 aa6.57□□□□□ -1.36
LIMA1-212ENST00000552491 USP6P35125 1406 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 USP31Q70CQ4 1352 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 NUTM1Q86Y26 1132 aa6.56□□□□□ -1.36
LIMA1-212ENST00000552491 EYA1Q99502 592 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms