RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 KIF13BQ9NQT8 1826 aa24.8■■□□□ 1.56
CHMP1A-207ENST00000549328 NEFMP07197 916 aa24.8■■□□□ 1.56
CHMP1A-207ENST00000549328 NARFQ9UHQ1 456 aa24.8■■□□□ 1.56
CHMP1A-207ENST00000549328 C10orf71Q711Q0 1435 aa24.79■■□□□ 1.56
CHMP1A-207ENST00000549328 DDX10Q13206 875 aaKnown RBP24.79■■□□□ 1.56
CHMP1A-207ENST00000549328 COL15A1P39059 1388 aa24.79■■□□□ 1.56
CHMP1A-207ENST00000549328 TM4SF1P30408 202 aa24.78■■□□□ 1.56
CHMP1A-207ENST00000549328 USPL1Q5W0Q7 1092 aa24.78■■□□□ 1.56
CHMP1A-207ENST00000549328 MCM10Q7L590 875 aa24.78■■□□□ 1.56
CHMP1A-207ENST00000549328 PNNQ9H307 717 aaKnown RBP24.78■■□□□ 1.56
CHMP1A-207ENST00000549328 EIF5P55010 431 aaKnown RBP24.77■■□□□ 1.56
CHMP1A-207ENST00000549328 PXDNLA1KZ92 1463 aa24.77■■□□□ 1.56
CHMP1A-207ENST00000549328 CANXP27824 592 aaKnown RBP24.76■■□□□ 1.55
CHMP1A-207ENST00000549328 PLEKHF1Q96S99 279 aa24.76■■□□□ 1.55
CHMP1A-207ENST00000549328 A0A087WZG4 1122 aa24.75■■□□□ 1.55
CHMP1A-207ENST00000549328 DDR1Q08345 913 aa24.75■■□□□ 1.55
CHMP1A-207ENST00000549328 KCNQ3O43525 872 aa24.74■■□□□ 1.55
CHMP1A-207ENST00000549328 A0A0G2JLW4 131 aa24.73■■□□□ 1.55
CHMP1A-207ENST00000549328 POLRMTO00411 1230 aaKnown RBP24.73■■□□□ 1.55
CHMP1A-207ENST00000549328 DCTN1Q14203 1278 aa24.73■■□□□ 1.55
CHMP1A-207ENST00000549328 IL6STP40189 918 aaPredicted RBP24.72■■□□□ 1.55
CHMP1A-207ENST00000549328 TAF7Q15545 349 aaPredicted RBP24.72■■□□□ 1.55
CHMP1A-207ENST00000549328 BCL2L12Q9HB09 334 aa24.72■■□□□ 1.55
CHMP1A-207ENST00000549328 WWC3Q9ULE0 1092 aa24.72■■□□□ 1.55
CHMP1A-207ENST00000549328 KIAA1551Q9HCM1 1747 aa24.72■■□□□ 1.55
CHMP1A-207ENST00000549328 DPEP1P16444 411 aa24.71■■□□□ 1.55
CHMP1A-207ENST00000549328 SNRPA1P09661 255 aaKnown RBP24.7■■□□□ 1.54
CHMP1A-207ENST00000549328 NFIXQ14938 502 aa24.7■■□□□ 1.54
CHMP1A-207ENST00000549328 NFE2L2Q16236 605 aa24.7■■□□□ 1.54
CHMP1A-207ENST00000549328 MYBBP1AQ9BQG0 1328 aaKnown RBP24.69■■□□□ 1.54
CHMP1A-207ENST00000549328 A1BGP04217 495 aa24.69■■□□□ 1.54
CHMP1A-207ENST00000549328 N4BP2Q86UW6 1770 aaPredicted RBP24.69■■□□□ 1.54
CHMP1A-207ENST00000549328 MAPK8IP3Q9UPT6 1336 aa24.68■■□□□ 1.54
CHMP1A-207ENST00000549328 KCNA3P22001 575 aa24.68■■□□□ 1.54
CHMP1A-207ENST00000549328 NPM2Q86SE8 214 aaKnown RBP24.68■■□□□ 1.54
CHMP1A-207ENST00000549328 USP16Q9Y5T5 823 aa24.68■■□□□ 1.54
CHMP1A-207ENST00000549328 PNISRQ8TF01 805 aaKnown RBP24.67■■□□□ 1.54
CHMP1A-207ENST00000549328 BCS1LQ9Y276 419 aa24.67■■□□□ 1.54
CHMP1A-207ENST00000549328 PIM2Q9P1W9 311 aa24.66■■□□□ 1.54
CHMP1A-207ENST00000549328 DLG5Q8TDM6 1919 aa24.66■■□□□ 1.54
CHMP1A-207ENST00000549328 SERPINB2P05120 415 aa24.65■■□□□ 1.54
CHMP1A-207ENST00000549328 TBC1D2BQ9UPU7 963 aa24.65■■□□□ 1.54
CHMP1A-207ENST00000549328 ZNF330Q9Y3S2 320 aaPredicted RBP24.65■■□□□ 1.54
CHMP1A-207ENST00000549328 PRAMEF22A3QJZ6 481 aa24.63■■□□□ 1.53
CHMP1A-207ENST00000549328 BRCA1P38398 1863 aaKnown RBP24.63■■□□□ 1.53
CHMP1A-207ENST00000549328 NRXN2Q9P2S2 1712 aa24.63■■□□□ 1.53
CHMP1A-207ENST00000549328 MIS18AQ9NYP9 233 aa24.62■■□□□ 1.53
CHMP1A-207ENST00000549328 AFDNP55196 1824 aaKnown RBP24.61■■□□□ 1.53
CHMP1A-207ENST00000549328 ADCY9O60503 1353 aa24.61■■□□□ 1.53
CHMP1A-207ENST00000549328 CAMTA2O94983 1202 aa24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 CHRNA5P30532 468 aa24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 ZEB1P37275 1124 aaPredicted RBP24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 DALRD3Q5D0E6 543 aaKnown RBP24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 TBC1D9BQ66K14 1250 aa24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 BICDL1Q6ZP65 573 aa24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 DZIP3Q86Y13 1208 aaKnown RBP24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 ATP10DQ9P241 1426 aa24.6■■□□□ 1.53
CHMP1A-207ENST00000549328 SCN7AQ01118 1682 aa24.59■■□□□ 1.53
CHMP1A-207ENST00000549328 RIPK4P57078 832 aa24.58■■□□□ 1.53
CHMP1A-207ENST00000549328 CLEC4GQ6UXB4 293 aa24.58■■□□□ 1.53
CHMP1A-207ENST00000549328 ARHGAP27Q6ZUM4 889 aa24.58■■□□□ 1.53
CHMP1A-207ENST00000549328 THUMPD2Q9BTF0 503 aaKnown RBP24.58■■□□□ 1.53
CHMP1A-207ENST00000549328 PRKRIP1Q9H875 184 aaPredicted RBP24.58■■□□□ 1.53
CHMP1A-207ENST00000549328 NBPF26B4DH59 902 aa24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 RGL2O15211 777 aa24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 GIGYF1O75420 1035 aaPredicted RBP24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 PIP4K2AP48426 406 aaPredicted RBP24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 EIF4A1P60842 406 aaKnown RBP24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 NBPF10Q6P3W6 841 aaKnown RBP24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 NBPF15Q8N660 670 aa24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 SETDB2Q96T68 719 aa24.57■■□□□ 1.52
CHMP1A-207ENST00000549328 ARFGEF1Q9Y6D6 1849 aa24.56■■□□□ 1.52
CHMP1A-207ENST00000549328 CARMIL3Q8ND23 1372 aa24.56■■□□□ 1.52
CHMP1A-207ENST00000549328 TMPOP42166 694 aaKnown RBP24.56■■□□□ 1.52
CHMP1A-207ENST00000549328 LMOD3Q0VAK6 560 aa24.56■■□□□ 1.52
CHMP1A-207ENST00000549328 KDM3BQ7LBC6 1761 aa24.56■■□□□ 1.52
CHMP1A-207ENST00000549328 WDR43Q15061 677 aaKnown RBP eCLIP24.55■■□□□ 1.52
CHMP1A-207ENST00000549328 PDZRN3Q9UPQ7 1066 aa24.55■■□□□ 1.52
CHMP1A-207ENST00000549328 C1QTNF8P60827 252 aa24.54■■□□□ 1.52
CHMP1A-207ENST00000549328 BRIP1Q9BX63 1249 aa24.54■■□□□ 1.52
CHMP1A-207ENST00000549328 BABAM1Q9NWV8 329 aa24.54■■□□□ 1.52
CHMP1A-207ENST00000549328 ZNF652Q9Y2D9 606 aa24.54■■□□□ 1.52
CHMP1A-207ENST00000549328 H0YIN7 160 aa24.53■■□□□ 1.52
CHMP1A-207ENST00000549328 PRR5LQ6MZQ0 368 aa24.53■■□□□ 1.52
CHMP1A-207ENST00000549328 GPBP1L1Q9HC44 474 aaPredicted RBP24.53■■□□□ 1.52
CHMP1A-207ENST00000549328 RUNDC1Q96C34 613 aa24.52■■□□□ 1.52
CHMP1A-207ENST00000549328 BCORQ6W2J9 1755 aa24.52■■□□□ 1.52
CHMP1A-207ENST00000549328 PDE6BP35913 854 aa24.51■■□□□ 1.51
CHMP1A-207ENST00000549328 C2CD5Q86YS7 1000 aa24.51■■□□□ 1.51
CHMP1A-207ENST00000549328 LAMB4A4D0S4 1761 aa24.5■■□□□ 1.51
CHMP1A-207ENST00000549328 TTLL6Q8N841 843 aa24.5■■□□□ 1.51
CHMP1A-207ENST00000549328 CNBD1Q8NA66 436 aa24.5■■□□□ 1.51
CHMP1A-207ENST00000549328 TSPYL4Q9UJ04 414 aa24.5■■□□□ 1.51
CHMP1A-207ENST00000549328 ADAMTS8Q9UP79 889 aa24.5■■□□□ 1.51
CHMP1A-207ENST00000549328 CCDC146Q8IYE0 955 aa24.49■■□□□ 1.51
CHMP1A-207ENST00000549328 DLEC1Q9Y238 1755 aa24.48■■□□□ 1.51
CHMP1A-207ENST00000549328 NPHP1O15259 732 aa24.47■■□□□ 1.51
CHMP1A-207ENST00000549328 ST5P78524 1137 aa24.47■■□□□ 1.51
CHMP1A-207ENST00000549328 ZNF526Q8TF50 670 aaPredicted RBP24.47■■□□□ 1.51
CHMP1A-207ENST00000549328 ERBB4Q15303 1308 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms