RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	PPP4R3B	Q5MIZ7	849 aa		10.64	□□□□□ -0.71
SNHG1-223	ENST00000545440	IP6K1	Q92551	441 aa		10.64	□□□□□ -0.71
SNHG1-223	ENST00000545440	POTEJ	P0CG39	1038 aa		10.63	□□□□□ -0.71
SNHG1-223	ENST00000545440	ANKRD24	Q8TF21	1146 aa		10.63	□□□□□ -0.71
SNHG1-223	ENST00000545440	SMG6	Q86US8	1419 aa	Known RBP	10.63	□□□□□ -0.71
SNHG1-223	ENST00000545440	LY75	O60449	1722 aa		10.62	□□□□□ -0.71
SNHG1-223	ENST00000545440	IRF6	O14896	467 aa		10.62	□□□□□ -0.71
SNHG1-223	ENST00000545440	HOXB3	P14651	431 aa	Predicted RBP	10.62	□□□□□ -0.71
SNHG1-223	ENST00000545440	FOSB	P53539	338 aa		10.62	□□□□□ -0.71
SNHG1-223	ENST00000545440	GGNBP2	Q9H3C7	697 aa		10.62	□□□□□ -0.71
SNHG1-223	ENST00000545440	NLRP2	Q9NX02	1062 aa		10.62	□□□□□ -0.71
SNHG1-223	ENST00000545440	FLT4	P35916	1363 aa		10.62	□□□□□ -0.71
SNHG1-223	ENST00000545440	CGNL1	Q0VF96	1302 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	ITGB4	P16144	1822 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	TRIM66	O15016	1216 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	HSPA5	P11021	654 aa	Known RBP	10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	IL2RB	P14784	551 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	HOXC9	P31274	260 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	CARD14	Q9BXL6	1004 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	CASZ1	Q86V15	1759 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	QSER1	Q2KHR3	1735 aa		10.61	□□□□□ -0.71
SNHG1-223	ENST00000545440	MEGF6	O75095	1541 aa		10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	PAPPA	Q13219	1627 aa		10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	GPR37	O15354	613 aa		10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	AMPH	P49418	695 aa		10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	MARCH10	Q8NA82	808 aa	Predicted RBP	10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	CCDC102A	Q96A19	550 aa		10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	CAMKK2	Q96RR4	588 aa		10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	INSR	P06213	1382 aa		10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	VIRMA	Q69YN4	1812 aa	Known RBP	10.6	□□□□□ -0.71
SNHG1-223	ENST00000545440	EXOC5	O00471	708 aa		10.59	□□□□□ -0.71
SNHG1-223	ENST00000545440	APBA3	O96018	575 aa		10.59	□□□□□ -0.71
SNHG1-223	ENST00000545440	PDE4D	Q08499	809 aa		10.59	□□□□□ -0.71
SNHG1-223	ENST00000545440	RRS1	Q15050	365 aa	Known RBP	10.59	□□□□□ -0.71
SNHG1-223	ENST00000545440	EZH2	Q15910	746 aa	Known RBP	10.59	□□□□□ -0.71
SNHG1-223	ENST00000545440	GPR153	Q6NV75	609 aa		10.59	□□□□□ -0.71
SNHG1-223	ENST00000545440	NSD2	O96028	1365 aa		10.59	□□□□□ -0.71
SNHG1-223	ENST00000545440	NCAPD2	Q15021	1401 aa		10.58	□□□□□ -0.72
SNHG1-223	ENST00000545440	TOGARAM1	Q9Y4F4	1720 aa		10.58	□□□□□ -0.72
SNHG1-223	ENST00000545440	TUBGCP6	Q96RT7	1819 aa		10.58	□□□□□ -0.72
SNHG1-223	ENST00000545440	C6orf132	Q5T0Z8	1188 aa		10.58	□□□□□ -0.72
SNHG1-223	ENST00000545440	ERICH6	Q7L0X2	663 aa		10.58	□□□□□ -0.72
SNHG1-223	ENST00000545440	TAF1L	Q8IZX4	1826 aa		10.57	□□□□□ -0.72
SNHG1-223	ENST00000545440	FBLN1	P23142	703 aa		10.57	□□□□□ -0.72
SNHG1-223	ENST00000545440	TTLL12	Q14166	644 aa	Predicted RBP	10.57	□□□□□ -0.72
SNHG1-223	ENST00000545440	LTV1	Q96GA3	475 aa	Predicted RBP	10.57	□□□□□ -0.72
SNHG1-223	ENST00000545440	PLSCR1	O15162	318 aa		10.56	□□□□□ -0.72
SNHG1-223	ENST00000545440	TSR1	Q2NL82	804 aa	Known RBP	10.56	□□□□□ -0.72
SNHG1-223	ENST00000545440	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.56	□□□□□ -0.72	2e-12	■■■□□ 16.9
SNHG1-223	ENST00000545440	POLR3GL	Q9BT43	218 aa		10.56	□□□□□ -0.72
SNHG1-223	ENST00000545440	SRCAP	Q6ZRS2	3230 aa		10.55	□□□□□ -0.72
SNHG1-223	ENST00000545440	C5	P01031	1676 aa		10.55	□□□□□ -0.72
SNHG1-223	ENST00000545440	OAT	P04181	439 aa		10.55	□□□□□ -0.72
SNHG1-223	ENST00000545440	PRIM1	P49642	420 aa	Known RBP	10.55	□□□□□ -0.72
SNHG1-223	ENST00000545440	CDHR5	Q9HBB8	845 aa		10.55	□□□□□ -0.72
SNHG1-223	ENST00000545440	LHX6	Q9UPM6	363 aa		10.55	□□□□□ -0.72
SNHG1-223	ENST00000545440	HOXB1	P14653	301 aa	Predicted RBP	10.54	□□□□□ -0.72
SNHG1-223	ENST00000545440	PTPRE	P23469	700 aa		10.54	□□□□□ -0.72
SNHG1-223	ENST00000545440	HSP90AB2P	Q58FF8	381 aa		10.54	□□□□□ -0.72
SNHG1-223	ENST00000545440	KDM4C	Q9H3R0	1056 aa		10.54	□□□□□ -0.72
SNHG1-223	ENST00000545440	EMILIN1	Q9Y6C2	1016 aa		10.54	□□□□□ -0.72
SNHG1-223	ENST00000545440	PLEKHG2	Q9H7P9	1386 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	COL24A1	Q17RW2	1714 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	R3HDM1	Q15032	1099 aa	Known RBP	10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	NBPF6	Q5VWK0	638 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	LHX8	Q68G74	356 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	PTF1A	Q7RTS3	328 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	NBPF4	Q96M43	638 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	PANK3	Q9H999	370 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	KIF7	Q2M1P5	1343 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	WASHC2A	Q641Q2	1341 aa		10.53	□□□□□ -0.72
SNHG1-223	ENST00000545440	AMHR2	Q16671	573 aa		10.52	□□□□□ -0.73
SNHG1-223	ENST00000545440	NBPF14	Q5TI25	921 aa		10.52	□□□□□ -0.73
SNHG1-223	ENST00000545440	RBM27	Q9P2N5	1060 aa	Known RBP	10.52	□□□□□ -0.73
SNHG1-223	ENST00000545440	GTF3C3	Q9Y5Q9	886 aa		10.52	□□□□□ -0.73
SNHG1-223	ENST00000545440	FECH	P22830	423 aa		10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	ZCRB1	Q8TBF4	217 aa	Known RBP	10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	RAPGEF4	Q8WZA2	1011 aa		10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	ADAM33	Q9BZ11	813 aa		10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	POLK	Q9UBT6	870 aa		10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	SCN11A	Q9UI33	1791 aa		10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	PCDH11X	Q9BZA7	1347 aa		10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	PCDH11Y	Q9BZA8	1340 aa		10.51	□□□□□ -0.73
SNHG1-223	ENST00000545440	KCNQ2	O43526	872 aa		10.5	□□□□□ -0.73
SNHG1-223	ENST00000545440	CLCN1	P35523	988 aa		10.5	□□□□□ -0.73
SNHG1-223	ENST00000545440	USHBP1	Q8N6Y0	703 aa		10.5	□□□□□ -0.73
SNHG1-223	ENST00000545440	ACSBG1	Q96GR2	724 aa		10.5	□□□□□ -0.73
SNHG1-223	ENST00000545440	DDRGK1	Q96HY6	314 aa		10.5	□□□□□ -0.73
SNHG1-223	ENST00000545440	BCL2L12	Q9HB09	334 aa		10.5	□□□□□ -0.73
SNHG1-223	ENST00000545440	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.5	□□□□□ -0.73
SNHG1-223	ENST00000545440	PPM1G	O15355	546 aa	Predicted RBP	10.49	□□□□□ -0.73
SNHG1-223	ENST00000545440	TAT	P17735	454 aa	Predicted RBP	10.49	□□□□□ -0.73
SNHG1-223	ENST00000545440	PRSS12	P56730	875 aa		10.49	□□□□□ -0.73
SNHG1-223	ENST00000545440	TXNRD1	Q16881	649 aa		10.49	□□□□□ -0.73
SNHG1-223	ENST00000545440	RBM46	Q8TBY0	533 aa	Known RBP	10.49	□□□□□ -0.73
SNHG1-223	ENST00000545440	DDX54	Q8TDD1	881 aa	Known RBP	10.49	□□□□□ -0.73
SNHG1-223	ENST00000545440	KNSTRN	Q9Y448	316 aa		10.49	□□□□□ -0.73
SNHG1-223	ENST00000545440	ZNF831	Q5JPB2	1677 aa		10.48	□□□□□ -0.73
SNHG1-223	ENST00000545440	PADI6	Q6TGC4	694 aa		10.48	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms