RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 POTEAQ6S8J7 498 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 IFNLR1Q8IU57 520 aaPredicted RBP6.53□□□□□ -1.36
USP28-213ENST00000544967 WWC1Q8IX03 1113 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 TBC1D2Q9BYX2 928 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 UBR3Q6ZT12 1888 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 PPP2R1AP30153 589 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 CABLES1Q8TDN4 633 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 KCPQ6ZWJ8 1503 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 RIPK4P57078 832 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 GGNBP2Q9H3C7 697 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 RNF216Q9NWF9 866 aaPredicted RBP6.53□□□□□ -1.36
USP28-213ENST00000544967 USP21Q9UK80 565 aa6.53□□□□□ -1.36
USP28-213ENST00000544967 GBP4Q96PP9 640 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 C4AP0C0L4 1744 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 C4BP0C0L5 1744 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 SCN7AQ01118 1682 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 GOLGA2Q08379 1002 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 SLFN5Q08AF3 891 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 SMC5Q8IY18 1101 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 PANK2Q9BZ23 570 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 LETM1O95202 739 aaPredicted RBP6.52□□□□□ -1.37
USP28-213ENST00000544967 TMCO4Q5TGY1 634 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.52□□□□□ -1.37
USP28-213ENST00000544967 TCP11L2Q8N4U5 519 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 PRDM11Q9NQV5 511 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 BTG4Q9NY30 223 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 NOL7Q9UMY1 257 aaKnown RBP6.52□□□□□ -1.37
USP28-213ENST00000544967 CEMIPQ8WUJ3 1361 aa6.52□□□□□ -1.37
USP28-213ENST00000544967 KIF13BQ9NQT8 1826 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 KDM6AO15550 1401 aaPredicted RBP6.51□□□□□ -1.37
USP28-213ENST00000544967 HSP90AB1P08238 724 aaKnown RBP6.51□□□□□ -1.37
USP28-213ENST00000544967 EIF4A2Q14240 407 aaKnown RBP6.51□□□□□ -1.37
USP28-213ENST00000544967 ANP32BQ92688 251 aaKnown RBP6.51□□□□□ -1.37
USP28-213ENST00000544967 PDLIM2Q96JY6 352 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 ANKRD24Q8TF21 1146 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 CDCA7LQ96GN5 454 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 CCDC94Q9BW85 323 aaPredicted RBP6.51□□□□□ -1.37
USP28-213ENST00000544967 NRXN2Q9P2S2 1712 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 TNNT2P45379 298 aaPredicted RBP6.51□□□□□ -1.37
USP28-213ENST00000544967 ZNF445P59923 1031 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 GRIPAP1Q4V328 841 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 EMILIN1Q9Y6C2 1016 aa6.51□□□□□ -1.37
USP28-213ENST00000544967 MSNP26038 577 aaKnown RBP6.5□□□□□ -1.37
USP28-213ENST00000544967 LARP1Q6PKG0 1096 aaKnown RBP6.5□□□□□ -1.37
USP28-213ENST00000544967 PLEKHF1Q96S99 279 aa6.5□□□□□ -1.37
USP28-213ENST00000544967 E9PSI1 815 aa6.5□□□□□ -1.37
USP28-213ENST00000544967 C20orf194Q5TEA3 1177 aa6.5□□□□□ -1.37
USP28-213ENST00000544967 CCDC82Q8N4S0 544 aa6.5□□□□□ -1.37
USP28-213ENST00000544967 CACNA1FO60840 1977 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 GTF2F1P35269 517 aaKnown RBP eCLIP6.49□□□□□ -1.37
USP28-213ENST00000544967 ANAPC15P60006 121 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 SASS6Q6UVJ0 657 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 MORC1Q86VD1 984 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 CLUAP1Q96AJ1 413 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 C8orf37Q96NL8 207 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 CHMP4BQ9H444 224 aaKnown RBP6.49□□□□□ -1.37
USP28-213ENST00000544967 PLIN1O60240 522 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 RAB3GAP1Q15042 981 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 NGLY1Q96IV0 654 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 KIF16BQ96L93 1317 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 HSP90AB2PQ58FF8 381 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 NBPF6Q5VWK0 638 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 NBPF4Q96M43 638 aa6.49□□□□□ -1.37
USP28-213ENST00000544967 QTRT2Q9H974 415 aaKnown RBP6.49□□□□□ -1.37
USP28-213ENST00000544967 KIAA1551Q9HCM1 1747 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 ANKRD36CQ5JPF3 1778 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 RXRBP28702 533 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 FAM193AP78312 1265 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 KLHL40Q2TBA0 621 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 IPO4Q8TEX9 1081 aaKnown RBP6.48□□□□□ -1.37
USP28-213ENST00000544967 EYA1Q99502 592 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 GZF1Q9H116 711 aaPredicted RBP6.48□□□□□ -1.37
USP28-213ENST00000544967 RRS1Q15050 365 aaKnown RBP6.48□□□□□ -1.37
USP28-213ENST00000544967 CCDC125Q86Z20 511 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 PRIMPOLQ96LW4 560 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 LAMB2P55268 1798 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 VASPP50552 380 aaPredicted RBP6.48□□□□□ -1.37
USP28-213ENST00000544967 ZC3H6P61129 1189 aaKnown RBP6.48□□□□□ -1.37
USP28-213ENST00000544967 SLC20A2Q08357 652 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 SLKQ9H2G2 1235 aaPredicted RBP6.48□□□□□ -1.37
USP28-213ENST00000544967 DLEC1Q9Y238 1755 aa6.48□□□□□ -1.37
USP28-213ENST00000544967 HEG1Q9ULI3 1381 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 ADAMTS2O95450 1211 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 MTHFSP49914 203 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 NUTM2GQ5VZR2 741 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 HSCBQ8IWL3 235 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 PCDH11XQ9BZA7 1347 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 PCDH11YQ9BZA8 1340 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 HTATSF1O43719 755 aaKnown RBP6.47□□□□□ -1.37
USP28-213ENST00000544967 IL2RBP14784 551 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 NASPP49321 788 aaPredicted RBP6.47□□□□□ -1.37
USP28-213ENST00000544967 HMGN5P82970 282 aaKnown RBP6.47□□□□□ -1.37
USP28-213ENST00000544967 CHRNA2Q15822 529 aa6.47□□□□□ -1.37
USP28-213ENST00000544967 MEX3CQ5U5Q3 659 aaKnown RBP6.47□□□□□ -1.37
USP28-213ENST00000544967 ARFGEF2Q9Y6D5 1785 aa6.46□□□□□ -1.37
USP28-213ENST00000544967 GOLGA6L22H0YM25 854 aa6.46□□□□□ -1.37
USP28-213ENST00000544967 ZSCAN20P17040 1043 aaPredicted RBP6.46□□□□□ -1.37
USP28-213ENST00000544967 RGS3P49796 1198 aa6.46□□□□□ -1.37
USP28-213ENST00000544967 FCHSD2O94868 740 aa6.46□□□□□ -1.38
USP28-213ENST00000544967 ZKSCAN5Q9Y2L8 839 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms