RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GIGYF1O75420 1035 aaPredicted RBP12.12□□□□□ -0.47
SS18-205ENST00000542420 HSP90AB1P08238 724 aaKnown RBP12.12□□□□□ -0.47
SS18-205ENST00000542420 LRRC59Q96AG4 307 aaKnown RBP12.12□□□□□ -0.47
SS18-205ENST00000542420 SLKQ9H2G2 1235 aaPredicted RBP12.12□□□□□ -0.47
SS18-205ENST00000542420 UBR2Q8IWV8 1755 aa12.12□□□□□ -0.47
SS18-205ENST00000542420 UTYO14607 1347 aa12.12□□□□□ -0.47
SS18-205ENST00000542420 PAPPAQ13219 1627 aa12.12□□□□□ -0.47
SS18-205ENST00000542420 LRRFIP2Q9Y608 721 aaKnown RBP12.12□□□□□ -0.47
SS18-205ENST00000542420 ADCY9O60503 1353 aa12.12□□□□□ -0.47
SS18-205ENST00000542420 STRCQ7RTU9 1775 aa12.12□□□□□ -0.47
SS18-205ENST00000542420 SPATA31A3Q5VYP0 1347 aa12.12□□□□□ -0.47
SS18-205ENST00000542420 TATP17735 454 aaPredicted RBP12.11□□□□□ -0.47
SS18-205ENST00000542420 MX1P20591 662 aa12.11□□□□□ -0.47
SS18-205ENST00000542420 ANAPC15P60006 121 aa12.11□□□□□ -0.47
SS18-205ENST00000542420 CLEC17AQ6ZS10 378 aa12.11□□□□□ -0.47
SS18-205ENST00000542420 RAPGEF4Q8WZA2 1011 aa12.11□□□□□ -0.47
SS18-205ENST00000542420 COL15A1P39059 1388 aa12.11□□□□□ -0.47
SS18-205ENST00000542420 DDX58O95786 925 aaKnown RBP12.11□□□□□ -0.47
SS18-205ENST00000542420 KSR2Q6VAB6 950 aa12.11□□□□□ -0.47
SS18-205ENST00000542420 C16orf71Q8IYS4 520 aaPredicted RBP12.11□□□□□ -0.47
SS18-205ENST00000542420 MCM4P33991 863 aa12.1□□□□□ -0.47
SS18-205ENST00000542420 KIF1BPQ96EK5 621 aa12.1□□□□□ -0.47
SS18-205ENST00000542420 DDX21Q9NR30 783 aaKnown RBP eCLIP12.1□□□□□ -0.47
SS18-205ENST00000542420 CHPF2Q9P2E5 772 aa12.1□□□□□ -0.47
SS18-205ENST00000542420 KDM6AO15550 1401 aaPredicted RBP12.1□□□□□ -0.47
SS18-205ENST00000542420 NHSL1Q5SYE7 1610 aa12.1□□□□□ -0.47
SS18-205ENST00000542420 PNMA6EA0A0J9YXQ4 647 aa12.1□□□□□ -0.47
SS18-205ENST00000542420 MCM2P49736 904 aa12.1□□□□□ -0.47
SS18-205ENST00000542420 ERC1Q8IUD2 1116 aa12.1□□□□□ -0.47
SS18-205ENST00000542420 RBM33Q96EV2 1170 aaKnown RBP12.1□□□□□ -0.47
SS18-205ENST00000542420 PHAXQ9H814 394 aaKnown RBP12.1□□□□□ -0.47
SS18-205ENST00000542420 ISY1Q9ULR0 285 aaKnown RBP12.1□□□□□ -0.47
SS18-205ENST00000542420 GLI3P10071 1580 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 SMARCA5O60264 1052 aaPredicted RBP12.09□□□□□ -0.47
SS18-205ENST00000542420 MPRIPQ6WCQ1 1025 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 IFNL2Q8IZJ0 200 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 SLC52A2Q9HAB3 445 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 AXIN2Q9Y2T1 843 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 AFDNP55196 1824 aaKnown RBP12.09□□□□□ -0.47
SS18-205ENST00000542420 MEGF6O75095 1541 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 TTC41PQ6P2S7 1318 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 ARFGEF2Q9Y6D5 1785 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 ST18O60284 1047 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 MCCP23508 829 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 RAB3GAP1Q15042 981 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 OTUD7AQ8TE49 926 aaPredicted RBP12.09□□□□□ -0.47
SS18-205ENST00000542420 GBP4Q96PP9 640 aa12.09□□□□□ -0.47
SS18-205ENST00000542420 CWC22Q9HCG8 908 aaKnown RBP12.09□□□□□ -0.47
SS18-205ENST00000542420 ERBB4Q15303 1308 aa12.08□□□□□ -0.47
SS18-205ENST00000542420 PHKG2P15735 406 aa12.08□□□□□ -0.48
SS18-205ENST00000542420 LINS1Q8NG48 757 aa12.08□□□□□ -0.48
SS18-205ENST00000542420 DCAF5Q96JK2 942 aa12.08□□□□□ -0.48
SS18-205ENST00000542420 PI4KAP2A4QPH2 592 aa12.08□□□□□ -0.48
SS18-205ENST00000542420 PPP1R42Q7Z4L9 355 aa12.08□□□□□ -0.48
SS18-205ENST00000542420 PI4KAP1Q8N8J0 262 aa12.08□□□□□ -0.48
SS18-205ENST00000542420 EXOC6BQ9Y2D4 811 aa12.08□□□□□ -0.48
SS18-205ENST00000542420 EIF2S2P20042 333 aaKnown RBP12.07□□□□□ -0.48
SS18-205ENST00000542420 SKOR2Q2VWA4 1001 aaPredicted RBP12.07□□□□□ -0.48
SS18-205ENST00000542420 ESYT1Q9BSJ8 1104 aa12.07□□□□□ -0.48
SS18-205ENST00000542420 SHANK3Q9BYB0 1731 aa12.07□□□□□ -0.48
SS18-205ENST00000542420 PLEKHG5O94827 1062 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 L1TD1Q5T7N2 865 aaKnown RBP12.06□□□□□ -0.48
SS18-205ENST00000542420 RHPN1Q8TCX5 695 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 ZMYND15Q9H091 742 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 ZBTB7CA1YPR0 619 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 KCNQ3O43525 872 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 NUCB2P80303 420 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 XPCQ01831 940 aaPredicted RBP12.06□□□□□ -0.48
SS18-205ENST00000542420 LMOD2Q6P5Q4 547 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 ZNF790Q6PG37 636 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 NECTIN2Q92692 538 aa12.06□□□□□ -0.48
SS18-205ENST00000542420 NUP188Q5SRE5 1749 aa12.05□□□□□ -0.48
SS18-205ENST00000542420 LARP1Q6PKG0 1096 aaKnown RBP12.05□□□□□ -0.48
SS18-205ENST00000542420 FAM43AQ8N2R8 423 aa12.05□□□□□ -0.48
SS18-205ENST00000542420 CHMLP26374 656 aa12.05□□□□□ -0.48
SS18-205ENST00000542420 SOS2Q07890 1332 aaPredicted RBP12.05□□□□□ -0.48
SS18-205ENST00000542420 SRGAP3O43295 1099 aa12.04□□□□□ -0.48
SS18-205ENST00000542420 MAP3K2Q9Y2U5 619 aa12.04□□□□□ -0.48
SS18-205ENST00000542420 SURF6O75683 361 aaKnown RBP12.04□□□□□ -0.48
SS18-205ENST00000542420 PDIA6Q15084 440 aa12.04□□□□□ -0.48
SS18-205ENST00000542420 GRM8O00222 908 aa12.03□□□□□ -0.48
SS18-205ENST00000542420 GLRX3O76003 335 aaKnown RBP12.03□□□□□ -0.48
SS18-205ENST00000542420 HSP90AA1P07900 732 aaKnown RBP12.03□□□□□ -0.48
SS18-205ENST00000542420 ZC3H6P61129 1189 aaKnown RBP12.03□□□□□ -0.48
SS18-205ENST00000542420 CNTROBQ8N137 903 aa12.03□□□□□ -0.48
SS18-205ENST00000542420 GPATCH3Q96I76 525 aa12.03□□□□□ -0.48
SS18-205ENST00000542420 NLRP2Q9NX02 1062 aa12.03□□□□□ -0.48
SS18-205ENST00000542420 SNRPA1P09661 255 aaKnown RBP12.03□□□□□ -0.48
SS18-205ENST00000542420 NBPF7P0C2Y1 421 aaPredicted RBP12.03□□□□□ -0.48
SS18-205ENST00000542420 TICAM2Q86XR7 235 aa12.03□□□□□ -0.48
SS18-205ENST00000542420 WDR17Q8IZU2 1322 aa12.03□□□□□ -0.48
SS18-205ENST00000542420 PI4K2BQ8TCG2 481 aa12.03□□□□□ -0.48
SS18-205ENST00000542420 C9orf78Q9NZ63 289 aaPredicted RBP12.03□□□□□ -0.48
SS18-205ENST00000542420 PLCH1Q4KWH8 1693 aa12.02□□□□□ -0.48
SS18-205ENST00000542420 APBB1O00213 710 aa12.02□□□□□ -0.49
SS18-205ENST00000542420 NEXNQ0ZGT2 675 aa12.02□□□□□ -0.49
SS18-205ENST00000542420 FMNL2Q96PY5 1086 aa12.02□□□□□ -0.49
SS18-205ENST00000542420 COL5A2P05997 1499 aaPredicted RBP12.02□□□□□ -0.49
SS18-205ENST00000542420 PCDH11XQ9BZA7 1347 aa12.02□□□□□ -0.49
SS18-205ENST00000542420 PCDH11YQ9BZA8 1340 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms