RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 VSIG10Q8N0Z9 540 aa19.03■□□□□ 0.64
SNHG1-213ENST00000540725 ZBTB1Q9Y2K1 713 aa19.03■□□□□ 0.64
SNHG1-213ENST00000540725 TM4SF1P30408 202 aa19.02■□□□□ 0.64
SNHG1-213ENST00000540725 GAS2L2Q8NHY3 880 aa19.02■□□□□ 0.64
SNHG1-213ENST00000540725 NRXN2Q9P2S2 1712 aa19.01■□□□□ 0.63
SNHG1-213ENST00000540725 TTC5Q8N0Z6 440 aa19.01■□□□□ 0.63
SNHG1-213ENST00000540725 PIM2Q9P1W9 311 aa19.01■□□□□ 0.63
SNHG1-213ENST00000540725 NARFQ9UHQ1 456 aa19.01■□□□□ 0.63
SNHG1-213ENST00000540725 GNAT3A8MTJ3 354 aa19■□□□□ 0.63
SNHG1-213ENST00000540725 TEFQ10587 303 aa19■□□□□ 0.63
SNHG1-213ENST00000540725 IL17REQ8NFR9 667 aa18.99■□□□□ 0.63
SNHG1-213ENST00000540725 SBF1O95248 1867 aa18.99■□□□□ 0.63
SNHG1-213ENST00000540725 DLEC1Q9Y238 1755 aa18.98■□□□□ 0.63
SNHG1-213ENST00000540725 KIF3CO14782 793 aa18.98■□□□□ 0.63
SNHG1-213ENST00000540725 CHRNA5P30532 468 aa18.98■□□□□ 0.63
SNHG1-213ENST00000540725 NFIXQ14938 502 aa18.98■□□□□ 0.63
SNHG1-213ENST00000540725 DALRD3Q5D0E6 543 aaKnown RBP18.98■□□□□ 0.63
SNHG1-213ENST00000540725 CFAP53Q96M91 514 aa18.98■□□□□ 0.63
SNHG1-213ENST00000540725 STARD3NLO95772 234 aa18.97■□□□□ 0.63
SNHG1-213ENST00000540725 CANXP27824 592 aaKnown RBP18.97■□□□□ 0.63
SNHG1-213ENST00000540725 BCL2L12Q9HB09 334 aa18.97■□□□□ 0.63
SNHG1-213ENST00000540725 ZNF790Q6PG37 636 aa18.96■□□□□ 0.63
SNHG1-213ENST00000540725 ZNF496Q96IT1 587 aaPredicted RBP18.96■□□□□ 0.63
SNHG1-213ENST00000540725 HEG1Q9ULI3 1381 aa18.96■□□□□ 0.63
SNHG1-213ENST00000540725 SCN7AQ01118 1682 aa18.96■□□□□ 0.63
SNHG1-213ENST00000540725 PRKAR2BP31323 418 aa18.95■□□□□ 0.62
SNHG1-213ENST00000540725 RSPH6AQ9H0K4 717 aa18.95■□□□□ 0.62
SNHG1-213ENST00000540725 CEMIPQ8WUJ3 1361 aa18.95■□□□□ 0.62
SNHG1-213ENST00000540725 HSPA6P17066 643 aa18.94■□□□□ 0.62
SNHG1-213ENST00000540725 EIF5P55010 431 aaKnown RBP18.94■□□□□ 0.62
SNHG1-213ENST00000540725 C9orf131Q5VYM1 1079 aa18.94■□□□□ 0.62
SNHG1-213ENST00000540725 PHACTR3Q96KR7 559 aa18.94■□□□□ 0.62
SNHG1-213ENST00000540725 SERPINB2P05120 415 aa18.93■□□□□ 0.62
SNHG1-213ENST00000540725 NUDCQ9Y266 331 aa18.93■□□□□ 0.62
SNHG1-213ENST00000540725 A0A087WZG4 1122 aa18.93■□□□□ 0.62
SNHG1-213ENST00000540725 TEX13AQ9BXU3 409 aaPredicted RBP18.93■□□□□ 0.62
SNHG1-213ENST00000540725 ANKRD31Q8N7Z5 1873 aa18.92■□□□□ 0.62
SNHG1-213ENST00000540725 PPP2R1AP30153 589 aa18.92■□□□□ 0.62
SNHG1-213ENST00000540725 CCDC88AQ3V6T2 1871 aa18.92■□□□□ 0.62
SNHG1-213ENST00000540725 FMNL2Q96PY5 1086 aa18.92■□□□□ 0.62
SNHG1-213ENST00000540725 CARMIL3Q8ND23 1372 aa18.91■□□□□ 0.62
SNHG1-213ENST00000540725 NMRK2Q9NPI5 230 aa18.91■□□□□ 0.62
SNHG1-213ENST00000540725 ZNF330Q9Y3S2 320 aaPredicted RBP18.91■□□□□ 0.62
SNHG1-213ENST00000540725 BTBD11A6QL63 1104 aa18.9■□□□□ 0.62
SNHG1-213ENST00000540725 U2AF1L5P0DN76 240 aaPredicted RBP18.9■□□□□ 0.62
SNHG1-213ENST00000540725 U2AF1Q01081 240 aaKnown RBP eCLIP18.9■□□□□ 0.622e-12■■■□□ 16.8
SNHG1-213ENST00000540725 BICDL1Q6ZP65 573 aa18.9■□□□□ 0.62
SNHG1-213ENST00000540725 RNF181Q9P0P0 153 aa18.9■□□□□ 0.62
SNHG1-213ENST00000540725 BCORQ6W2J9 1755 aa18.9■□□□□ 0.62
SNHG1-213ENST00000540725 KCNQ3O43525 872 aa18.89■□□□□ 0.61
SNHG1-213ENST00000540725 IL6STP40189 918 aaPredicted RBP18.89■□□□□ 0.61
SNHG1-213ENST00000540725 TOMM70O94826 608 aa18.88■□□□□ 0.61
SNHG1-213ENST00000540725 A1BGP04217 495 aa18.88■□□□□ 0.61
SNHG1-213ENST00000540725 TBC1D9BQ66K14 1250 aa18.88■□□□□ 0.61
SNHG1-213ENST00000540725 TBC1D2BQ9UPU7 963 aa18.88■□□□□ 0.61
SNHG1-213ENST00000540725 COL11A2P13942 1736 aaPredicted RBP18.88■□□□□ 0.61
SNHG1-213ENST00000540725 TNRC6CQ9HCJ0 1690 aaKnown RBP18.87■□□□□ 0.61
SNHG1-213ENST00000540725 C2CD5Q86YS7 1000 aa18.87■□□□□ 0.61
SNHG1-213ENST00000540725 RTF1Q92541 710 aaKnown RBP18.87■□□□□ 0.61
SNHG1-213ENST00000540725 DLG5Q8TDM6 1919 aa18.87■□□□□ 0.61
SNHG1-213ENST00000540725 H0YIN7 160 aa18.86■□□□□ 0.61
SNHG1-213ENST00000540725 RASSF7Q02833 373 aa18.86■□□□□ 0.61
SNHG1-213ENST00000540725 NPM2Q86SE8 214 aaKnown RBP18.86■□□□□ 0.61
SNHG1-213ENST00000540725 TTLL6Q8N841 843 aa18.86■□□□□ 0.61
SNHG1-213ENST00000540725 KDM2BQ8NHM5 1336 aa18.85■□□□□ 0.61
SNHG1-213ENST00000540725 CACNA1SQ13698 1873 aa18.85■□□□□ 0.61
SNHG1-213ENST00000540725 MCM10Q7L590 875 aa18.85■□□□□ 0.61
SNHG1-213ENST00000540725 TIAM2Q8IVF5 1701 aa18.85■□□□□ 0.61
SNHG1-213ENST00000540725 CAMTA2O94983 1202 aa18.84■□□□□ 0.61
SNHG1-213ENST00000540725 PRR5LQ6MZQ0 368 aa18.83■□□□□ 0.61
SNHG1-213ENST00000540725 USP16Q9Y5T5 823 aa18.83■□□□□ 0.61
SNHG1-213ENST00000540725 PRAMEF22A3QJZ6 481 aa18.82■□□□□ 0.6
SNHG1-213ENST00000540725 DCTN1Q14203 1278 aa18.82■□□□□ 0.6
SNHG1-213ENST00000540725 DZIP3Q86Y13 1208 aaKnown RBP18.82■□□□□ 0.6
SNHG1-213ENST00000540725 C16orf71Q8IYS4 520 aaPredicted RBP18.82■□□□□ 0.6
SNHG1-213ENST00000540725 CCDC24Q8N4L8 307 aa18.82■□□□□ 0.6
SNHG1-213ENST00000540725 BRIP1Q9BX63 1249 aa18.82■□□□□ 0.6
SNHG1-213ENST00000540725 FER1L6Q2WGJ9 1857 aa18.82■□□□□ 0.6
SNHG1-213ENST00000540725 ZC3H4Q9UPT8 1303 aaKnown RBP18.82■□□□□ 0.6
SNHG1-213ENST00000540725 DICER1Q9UPY3 1922 aaKnown RBP18.82■□□□□ 0.6
SNHG1-213ENST00000540725 HTATSF1O43719 755 aaKnown RBP18.81■□□□□ 0.6
SNHG1-213ENST00000540725 LMNB1P20700 586 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 PDE6BP35913 854 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 PIP4K2AP48426 406 aaPredicted RBP18.81■□□□□ 0.6
SNHG1-213ENST00000540725 APLP1P51693 650 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 RBM46Q8TBY0 533 aaKnown RBP18.81■□□□□ 0.6
SNHG1-213ENST00000540725 SETDB2Q96T68 719 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 PDZRN3Q9UPQ7 1066 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 WDR90Q96KV7 1748 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 LAMB4A4D0S4 1761 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 SNRPA1P09661 255 aaKnown RBP18.81■□□□□ 0.6
SNHG1-213ENST00000540725 CNBD1Q8NA66 436 aa18.81■□□□□ 0.6
SNHG1-213ENST00000540725 ZNF622Q969S3 477 aaKnown RBP eCLIP18.81■□□□□ 0.6
SNHG1-213ENST00000540725 ARFGEF2Q9Y6D5 1785 aa18.8■□□□□ 0.6
SNHG1-213ENST00000540725 SLX4Q8IY92 1834 aa18.8■□□□□ 0.6
SNHG1-213ENST00000540725 NFKBIEO00221 500 aa18.8■□□□□ 0.6
SNHG1-213ENST00000540725 PRELPP51888 382 aa18.8■□□□□ 0.6
SNHG1-213ENST00000540725 RRAGCQ9HB90 399 aa18.8■□□□□ 0.6
SNHG1-213ENST00000540725 KDM3BQ7LBC6 1761 aa18.79■□□□□ 0.6
SNHG1-213ENST00000540725 NPHP1O15259 732 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms