RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 GRIN3BO60391 1043 aa15.33■□□□□ 0.04
RTN3-209ENST00000538995 MCM10Q7L590 875 aa15.33■□□□□ 0.04
RTN3-209ENST00000538995 ZPR1O75312 459 aa15.32■□□□□ 0.04
RTN3-209ENST00000538995 SRP68Q9UHB9 627 aaKnown RBP15.32■□□□□ 0.04
RTN3-209ENST00000538995 PARP3Q9Y6F1 533 aa15.32■□□□□ 0.04
RTN3-209ENST00000538995 MAPK8IP3Q9UPT6 1336 aa15.32■□□□□ 0.04
RTN3-209ENST00000538995 NFE2L2Q16236 605 aa15.31■□□□□ 0.04
RTN3-209ENST00000538995 PELP1Q8IZL8 1130 aaKnown RBP15.31■□□□□ 0.04
RTN3-209ENST00000538995 NARFQ9UHQ1 456 aa15.31■□□□□ 0.04
RTN3-209ENST00000538995 A0A087WZG4 1122 aa15.3■□□□□ 0.04
RTN3-209ENST00000538995 YBX3P16989 372 aaKnown RBP eCLIP15.3■□□□□ 0.04
RTN3-209ENST00000538995 TGFB2P61812 414 aa15.3■□□□□ 0.04
RTN3-209ENST00000538995 FKBP8Q14318 412 aa15.3■□□□□ 0.04
RTN3-209ENST00000538995 KIF13BQ9NQT8 1826 aa15.29■□□□□ 0.04
RTN3-209ENST00000538995 PXDNLA1KZ92 1463 aa15.29■□□□□ 0.04
RTN3-209ENST00000538995 EIF5P55010 431 aaKnown RBP15.29■□□□□ 0.04
RTN3-209ENST00000538995 DCTN1Q14203 1278 aa15.29■□□□□ 0.04
RTN3-209ENST00000538995 TAF7Q15545 349 aaPredicted RBP15.29■□□□□ 0.04
RTN3-209ENST00000538995 USPL1Q5W0Q7 1092 aa15.29■□□□□ 0.04
RTN3-209ENST00000538995 PNISRQ8TF01 805 aaKnown RBP15.29■□□□□ 0.04
RTN3-209ENST00000538995 KCNQ3O43525 872 aa15.28■□□□□ 0.04
RTN3-209ENST00000538995 SNRPA1P09661 255 aaKnown RBP15.28■□□□□ 0.04
RTN3-209ENST00000538995 CANXP27824 592 aaKnown RBP15.28■□□□□ 0.04
RTN3-209ENST00000538995 IL6STP40189 918 aaPredicted RBP15.28■□□□□ 0.04
RTN3-209ENST00000538995 PRKRIP1Q9H875 184 aaPredicted RBP15.28■□□□□ 0.04
RTN3-209ENST00000538995 POLRMTO00411 1230 aaKnown RBP15.27■□□□□ 0.04
RTN3-209ENST00000538995 TM4SF1P30408 202 aa15.27■□□□□ 0.04
RTN3-209ENST00000538995 DDR1Q08345 913 aa15.27■□□□□ 0.04
RTN3-209ENST00000538995 CHD4Q14839 1912 aa15.26■□□□□ 0.03
RTN3-209ENST00000538995 LMOD3Q0VAK6 560 aa15.26■□□□□ 0.03
RTN3-209ENST00000538995 NFIXQ14938 502 aa15.25■□□□□ 0.03
RTN3-209ENST00000538995 WDR43Q15061 677 aaKnown RBP eCLIP15.25■□□□□ 0.03
RTN3-209ENST00000538995 NPM2Q86SE8 214 aaKnown RBP15.25■□□□□ 0.03
RTN3-209ENST00000538995 BCL2L12Q9HB09 334 aa15.25■□□□□ 0.03
RTN3-209ENST00000538995 KIAA1551Q9HCM1 1747 aa15.25■□□□□ 0.03
RTN3-209ENST00000538995 SCN7AQ01118 1682 aa15.25■□□□□ 0.03
RTN3-209ENST00000538995 USP16Q9Y5T5 823 aa15.24■□□□□ 0.03
RTN3-209ENST00000538995 DLG5Q8TDM6 1919 aa15.23■□□□□ 0.03
RTN3-209ENST00000538995 A1BGP04217 495 aa15.23■□□□□ 0.03
RTN3-209ENST00000538995 ZNF784Q8NCA9 323 aaPredicted RBP15.23■□□□□ 0.03
RTN3-209ENST00000538995 KDM3BQ7LBC6 1761 aa15.22■□□□□ 0.03
RTN3-209ENST00000538995 RGL2O15211 777 aa15.22■□□□□ 0.03
RTN3-209ENST00000538995 TMPOP42166 694 aaKnown RBP15.22■□□□□ 0.03
RTN3-209ENST00000538995 RIPK4P57078 832 aa15.22■□□□□ 0.03
RTN3-209ENST00000538995 RUNDC1Q96C34 613 aa15.22■□□□□ 0.03
RTN3-209ENST00000538995 BABAM1Q9NWV8 329 aa15.22■□□□□ 0.03
RTN3-209ENST00000538995 ZNF330Q9Y3S2 320 aaPredicted RBP15.22■□□□□ 0.03
RTN3-209ENST00000538995 NRXN2Q9P2S2 1712 aa15.22■□□□□ 0.03
RTN3-209ENST00000538995 A0A0G2JLW4 131 aa15.21■□□□□ 0.03
RTN3-209ENST00000538995 PRAMEF22A3QJZ6 481 aa15.21■□□□□ 0.03
RTN3-209ENST00000538995 DPEP1P16444 411 aa15.21■□□□□ 0.03
RTN3-209ENST00000538995 THUMPD2Q9BTF0 503 aaKnown RBP15.21■□□□□ 0.03
RTN3-209ENST00000538995 CARMIL3Q8ND23 1372 aa15.21■□□□□ 0.02
RTN3-209ENST00000538995 GIGYF1O75420 1035 aaPredicted RBP15.2■□□□□ 0.02
RTN3-209ENST00000538995 CAMTA2O94983 1202 aa15.2■□□□□ 0.02
RTN3-209ENST00000538995 SERPINB2P05120 415 aa15.2■□□□□ 0.02
RTN3-209ENST00000538995 EIF4A1P60842 406 aaKnown RBP15.2■□□□□ 0.02
RTN3-209ENST00000538995 DZIP3Q86Y13 1208 aaKnown RBP15.2■□□□□ 0.02
RTN3-209ENST00000538995 MIS18AQ9NYP9 233 aa15.2■□□□□ 0.02
RTN3-209ENST00000538995 TBC1D2BQ9UPU7 963 aa15.2■□□□□ 0.02
RTN3-209ENST00000538995 LAMB4A4D0S4 1761 aa15.2■□□□□ 0.02
RTN3-209ENST00000538995 KCNA3P22001 575 aa15.19■□□□□ 0.02
RTN3-209ENST00000538995 CLEC4GQ6UXB4 293 aa15.19■□□□□ 0.02
RTN3-209ENST00000538995 PIM2Q9P1W9 311 aa15.19■□□□□ 0.02
RTN3-209ENST00000538995 ADAMTS8Q9UP79 889 aa15.19■□□□□ 0.02
RTN3-209ENST00000538995 BCORQ6W2J9 1755 aa15.19■□□□□ 0.02
RTN3-209ENST00000538995 ZNF316A6NFI3 1004 aaPredicted RBP15.18■□□□□ 0.02
RTN3-209ENST00000538995 NBPF26B4DH59 902 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 TBC1D9BQ66K14 1250 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 NBPF10Q6P3W6 841 aaKnown RBP15.18■□□□□ 0.02
RTN3-209ENST00000538995 CCDC146Q8IYE0 955 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 NBPF15Q8N660 670 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 TSPYL4Q9UJ04 414 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 WWC3Q9ULE0 1092 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 BCS1LQ9Y276 419 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 ZNF652Q9Y2D9 606 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 ADCY9O60503 1353 aa15.18■□□□□ 0.02
RTN3-209ENST00000538995 N4BP2Q86UW6 1770 aaPredicted RBP15.18■□□□□ 0.02
RTN3-209ENST00000538995 ERBB4Q15303 1308 aa15.17■□□□□ 0.02
RTN3-209ENST00000538995 BRCA1P38398 1863 aaKnown RBP15.17■□□□□ 0.02
RTN3-209ENST00000538995 BICDL1Q6ZP65 573 aa15.17■□□□□ 0.02
RTN3-209ENST00000538995 PIP4K2AP48426 406 aaPredicted RBP15.16■□□□□ 0.02
RTN3-209ENST00000538995 DALRD3Q5D0E6 543 aaKnown RBP15.16■□□□□ 0.02
RTN3-209ENST00000538995 SETDB2Q96T68 719 aa15.16■□□□□ 0.02
RTN3-209ENST00000538995 PDZRN3Q9UPQ7 1066 aa15.16■□□□□ 0.02
RTN3-209ENST00000538995 AFDNP55196 1824 aaKnown RBP15.15■□□□□ 0.02
RTN3-209ENST00000538995 CHRNA5P30532 468 aa15.15■□□□□ 0.02
RTN3-209ENST00000538995 RRP7AQ9Y3A4 280 aaKnown RBP15.15■□□□□ 0.02
RTN3-209ENST00000538995 PRR5LQ6MZQ0 368 aa15.14■□□□□ 0.01
RTN3-209ENST00000538995 CNBD1Q8NA66 436 aa15.14■□□□□ 0.01
RTN3-209ENST00000538995 BRIP1Q9BX63 1249 aa15.14■□□□□ 0.01
RTN3-209ENST00000538995 TRIM35Q9UPQ4 493 aa15.14■□□□□ 0.01
RTN3-209ENST00000538995 ATP10DQ9P241 1426 aa15.14■□□□□ 0.01
RTN3-209ENST00000538995 CHL1O00533 1208 aa15.13■□□□□ 0.01
RTN3-209ENST00000538995 PDE6BP35913 854 aa15.13■□□□□ 0.01
RTN3-209ENST00000538995 NEUROD2Q15784 382 aa15.13■□□□□ 0.01
RTN3-209ENST00000538995 ARFGEF1Q9Y6D6 1849 aa15.13■□□□□ 0.01
RTN3-209ENST00000538995 ERVV-1B6SEH8 477 aa15.12■□□□□ 0.01
RTN3-209ENST00000538995 H0YIN7 160 aa15.12■□□□□ 0.01
RTN3-209ENST00000538995 ST5P78524 1137 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms