RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 TM4SF1P30408 202 aa13.82□□□□□ -0.2
CSDE1-217ENST00000534699 IL6STP40189 918 aaPredicted RBP13.82□□□□□ -0.2
CSDE1-217ENST00000534699 U2AF1Q01081 240 aaKnown RBP eCLIP13.82□□□□□ -0.2
CSDE1-217ENST00000534699 MSL1Q68DK7 614 aa13.82□□□□□ -0.2
CSDE1-217ENST00000534699 NLGN2Q8NFZ4 835 aa13.82□□□□□ -0.2
CSDE1-217ENST00000534699 COL15A1P39059 1388 aa13.82□□□□□ -0.2
CSDE1-217ENST00000534699 PXDNLA1KZ92 1463 aa13.81□□□□□ -0.2
CSDE1-217ENST00000534699 AMIGO3Q86WK7 504 aa13.81□□□□□ -0.2
CSDE1-217ENST00000534699 DNAJC10Q8IXB1 793 aa13.81□□□□□ -0.2
CSDE1-217ENST00000534699 EIF5P55010 431 aaKnown RBP13.8□□□□□ -0.2
CSDE1-217ENST00000534699 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
CSDE1-217ENST00000534699 LMOD3Q0VAK6 560 aa13.79□□□□□ -0.2
CSDE1-217ENST00000534699 KLHL34Q8N239 644 aa13.79□□□□□ -0.2
CSDE1-217ENST00000534699 ADCY9O60503 1353 aa13.79□□□□□ -0.2
CSDE1-217ENST00000534699 BTBD11A6QL63 1104 aa13.78□□□□□ -0.2
CSDE1-217ENST00000534699 TAF7Q15545 349 aaPredicted RBP13.78□□□□□ -0.2
CSDE1-217ENST00000534699 MYBBP1AQ9BQG0 1328 aaKnown RBP13.78□□□□□ -0.2
CSDE1-217ENST00000534699 SNRPA1P09661 255 aaKnown RBP13.77□□□□□ -0.2
CSDE1-217ENST00000534699 ZNF784Q8NCA9 323 aaPredicted RBP13.77□□□□□ -0.2
CSDE1-217ENST00000534699 N4BP2Q86UW6 1770 aaPredicted RBP13.77□□□□□ -0.2
CSDE1-217ENST00000534699 ARFGEF2Q9Y6D5 1785 aa13.77□□□□□ -0.2
CSDE1-217ENST00000534699 ERBB4Q15303 1308 aa13.77□□□□□ -0.2
CSDE1-217ENST00000534699 YBX3P16989 372 aaKnown RBP eCLIP13.77□□□□□ -0.219e-10■■□□□ 13.4
CSDE1-217ENST00000534699 PHACTR3Q96KR7 559 aa13.77□□□□□ -0.21
CSDE1-217ENST00000534699 NFE2L2Q16236 605 aa13.77□□□□□ -0.21
CSDE1-217ENST00000534699 CLEC4GQ6UXB4 293 aa13.77□□□□□ -0.21
CSDE1-217ENST00000534699 PLEKHF1Q96S99 279 aa13.77□□□□□ -0.21
CSDE1-217ENST00000534699 ZC3H4Q9UPT8 1303 aaKnown RBP13.76□□□□□ -0.21
CSDE1-217ENST00000534699 POLRMTO00411 1230 aaKnown RBP13.76□□□□□ -0.21
CSDE1-217ENST00000534699 SLC39A6Q13433 755 aa13.76□□□□□ -0.21
CSDE1-217ENST00000534699 NPM2Q86SE8 214 aaKnown RBP13.76□□□□□ -0.21
CSDE1-217ENST00000534699 ZNF496Q96IT1 587 aaPredicted RBP13.76□□□□□ -0.21
CSDE1-217ENST00000534699 PIM2Q9P1W9 311 aa13.75□□□□□ -0.21
CSDE1-217ENST00000534699 MAPK8IP3Q9UPT6 1336 aa13.75□□□□□ -0.21
CSDE1-217ENST00000534699 ZBTB1Q9Y2K1 713 aa13.75□□□□□ -0.21
CSDE1-217ENST00000534699 ZNF652Q9Y2D9 606 aa13.74□□□□□ -0.21
CSDE1-217ENST00000534699 FKBP8Q14318 412 aa13.74□□□□□ -0.21
CSDE1-217ENST00000534699 USPL1Q5W0Q7 1092 aa13.74□□□□□ -0.21
CSDE1-217ENST00000534699 ATP10DQ9P241 1426 aa13.73□□□□□ -0.21
CSDE1-217ENST00000534699 CARMIL3Q8ND23 1372 aa13.73□□□□□ -0.21
CSDE1-217ENST00000534699 PELP1Q8IZL8 1130 aaKnown RBP13.73□□□□□ -0.21
CSDE1-217ENST00000534699 IBTKQ9P2D0 1353 aaPredicted RBP13.72□□□□□ -0.21
CSDE1-217ENST00000534699 DDR1Q08345 913 aa13.72□□□□□ -0.21
CSDE1-217ENST00000534699 RIC1Q4ADV7 1423 aa13.72□□□□□ -0.21
CSDE1-217ENST00000534699 NFIXQ14938 502 aa13.71□□□□□ -0.21
CSDE1-217ENST00000534699 NCBP3Q53F19 620 aaKnown RBP13.71□□□□□ -0.21
CSDE1-217ENST00000534699 BCL2L12Q9HB09 334 aa13.71□□□□□ -0.21
CSDE1-217ENST00000534699 SRP68Q9UHB9 627 aaKnown RBP13.71□□□□□ -0.21
CSDE1-217ENST00000534699 SERPINB2P05120 415 aa13.71□□□□□ -0.22
CSDE1-217ENST00000534699 DPEP1P16444 411 aa13.71□□□□□ -0.22
CSDE1-217ENST00000534699 PDE6BP35913 854 aa13.71□□□□□ -0.22
CSDE1-217ENST00000534699 DALRD3Q5D0E6 543 aaKnown RBP13.71□□□□□ -0.22
CSDE1-217ENST00000534699 BRIP1Q9BX63 1249 aa13.7□□□□□ -0.22
CSDE1-217ENST00000534699 ERVV-1B6SEH8 477 aa13.7□□□□□ -0.22
CSDE1-217ENST00000534699 KCNA3P22001 575 aa13.7□□□□□ -0.22
CSDE1-217ENST00000534699 CANXP27824 592 aaKnown RBP13.69□□□□□ -0.22
CSDE1-217ENST00000534699 SOGA3Q5TF21 947 aa13.69□□□□□ -0.22
CSDE1-217ENST00000534699 ANKRD31Q8N7Z5 1873 aa13.69□□□□□ -0.22
CSDE1-217ENST00000534699 CHMP4AQ9BY43 222 aa13.69□□□□□ -0.22
CSDE1-217ENST00000534699 GIGYF1O75420 1035 aaPredicted RBP13.68□□□□□ -0.22
CSDE1-217ENST00000534699 CAMTA2O94983 1202 aa13.68□□□□□ -0.22
CSDE1-217ENST00000534699 SMIM5Q71RC9 77 aa13.68□□□□□ -0.22
CSDE1-217ENST00000534699 SBF1O95248 1867 aa13.68□□□□□ -0.22
CSDE1-217ENST00000534699 TNRC6CQ9HCJ0 1690 aaKnown RBP13.68□□□□□ -0.22
CSDE1-217ENST00000534699 RUNDC1Q96C34 613 aa13.68□□□□□ -0.22
CSDE1-217ENST00000534699 DICER1Q9UPY3 1922 aaKnown RBP13.68□□□□□ -0.22
CSDE1-217ENST00000534699 H0YIN7 160 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 STYK1Q6J9G0 422 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 SETDB2Q96T68 719 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 HOXB7P09629 217 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 MCM10Q7L590 875 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 DZIP3Q86Y13 1208 aaKnown RBP13.67□□□□□ -0.22
CSDE1-217ENST00000534699 RNF123Q5XPI4 1314 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 C1QTNF8P60827 252 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 EIF4A1P60842 406 aaKnown RBP13.67□□□□□ -0.22
CSDE1-217ENST00000534699 ST5P78524 1137 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 CALD1Q05682 793 aaKnown RBP13.67□□□□□ -0.22
CSDE1-217ENST00000534699 GRIPAP1Q4V328 841 aa13.67□□□□□ -0.22
CSDE1-217ENST00000534699 LTBP3Q9NS15 1303 aa13.66□□□□□ -0.22
CSDE1-217ENST00000534699 A0A0G2JLW4 131 aa13.66□□□□□ -0.22
CSDE1-217ENST00000534699 BCS1LQ9Y276 419 aa13.66□□□□□ -0.22
CSDE1-217ENST00000534699 NUP98P52948 1817 aa13.66□□□□□ -0.22
CSDE1-217ENST00000534699 WDR43Q15061 677 aaKnown RBP eCLIP13.66□□□□□ -0.22
CSDE1-217ENST00000534699 TTLL6Q8N841 843 aa13.66□□□□□ -0.22
CSDE1-217ENST00000534699 CNKSR1Q969H4 720 aa13.66□□□□□ -0.22
CSDE1-217ENST00000534699 TMPOP42166 694 aaKnown RBP13.65□□□□□ -0.22
CSDE1-217ENST00000534699 NYXQ9GZU5 481 aa13.65□□□□□ -0.22
CSDE1-217ENST00000534699 USP16Q9Y5T5 823 aa13.65□□□□□ -0.22
CSDE1-217ENST00000534699 KLRG2A4D1S0 409 aaPredicted RBP13.65□□□□□ -0.22
CSDE1-217ENST00000534699 A1BGP04217 495 aa13.65□□□□□ -0.22
CSDE1-217ENST00000534699 DDX10Q13206 875 aaKnown RBP13.65□□□□□ -0.22
CSDE1-217ENST00000534699 FER1L6Q2WGJ9 1857 aa13.65□□□□□ -0.23
CSDE1-217ENST00000534699 PRKRIP1Q9H875 184 aaPredicted RBP13.64□□□□□ -0.23
CSDE1-217ENST00000534699 ANKRD36CQ5JPF3 1778 aa13.64□□□□□ -0.23
CSDE1-217ENST00000534699 KCNQ3O43525 872 aa13.64□□□□□ -0.23
CSDE1-217ENST00000534699 TBC1D9BQ66K14 1250 aa13.64□□□□□ -0.23
CSDE1-217ENST00000534699 GPBP1L1Q9HC44 474 aaPredicted RBP13.64□□□□□ -0.23
CSDE1-217ENST00000534699 RIPK4P57078 832 aa13.63□□□□□ -0.23
CSDE1-217ENST00000534699 TPTE2Q6XPS3 522 aa13.63□□□□□ -0.23
CSDE1-217ENST00000534699 ARHGAP27Q6ZUM4 889 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms